Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G3590 Fragaria x ananassa HOM05D004331 ORTHO05D004984 5.2e-158 561.2 297 100.0
FvH4_7g26230 Fragaria vesca HOM05D004331 ORTHO05D004984 2.5e-152 542.3 300 96.3
FAN06G3213 Fragaria x ananassa HOM05D004331 ORTHO05D004984 9.5e-152 540.4 297 93.3
RcHm_v2.0_Chr1g0372681 Rosa chinensis HOM05D004331 ORTHO05D004984 3.1e-142 508.8 309 86.7
MD07G1237400 Malus domestica HOM05D004331 ORTHO05D004984 6.0e-122 441.4 317 72.9
MD01G1171000 Malus domestica HOM05D004331 ORTHO05D004984 6.2e-119 431.4 320 71.2
TWI73G1241 Tripterygium wilfordii HOM05D004331 ORTHO05D004984 1.5e-109 400.2 265 76.2
ClCG11G005520 Citrullus lanatus HOM05D004331 ORTHO05D004984 3.2e-107 392.5 257 78.6
Atru.chr12.214 Acer truncatum HOM05D004331 ORTHO05D004984 9.3e-107 391.0 251 79.3
Thhalv10006036m.g Eutrema salsugineum HOM05D004331 ORTHO05D004984 9.3e-107 391.0 251 78.1
Sed0000286 Sechium edule HOM05D004331 ORTHO05D004984 9.3e-107 391.0 333 64.6
Haze_17376 Corylus avellana HOM05D004331 ORTHO05D004984 1.2e-106 390.6 244 79.5
Manes.10G004100 Manihot esculenta HOM05D004331 ORTHO05D004984 3.5e-106 389.0 255 75.7
Cfa001189 Carpinus fangiana HOM05D004331 ORTHO05D004984 4.6e-106 388.7 244 79.1
Sp5g06060 Schrenkiella parvula HOM05D004331 ORTHO05D004984 6.0e-106 388.3 251 77.3
Thhalv10016808m.g Eutrema salsugineum HOM05D004331 ORTHO05D004984 1.0e-105 387.5 240 78.8
Potri.019G062200 Populus trichocarpa HOM05D004331 ORTHO05D004984 1.3e-105 387.1 252 77.8
QL08p065166 Quercus lobata HOM05D004331 ORTHO05D004984 2.3e-105 386.3 253 77.1
CARHR166560 Cardamine hirsuta HOM05D004331 ORTHO05D004984 3.0e-105 386.0 251 76.5
CsaV3_5G039270 Cucumis sativus L. HOM05D004331 ORTHO05D004984 3.0e-105 386.0 257 77.0
arahy.Tifrunner.gnm1.ann1.J1TSCZ Arachis hypogaea HOM05D004331 ORTHO05D004984 3.9e-105 385.6 330 62.1
arahy.Tifrunner.gnm1.ann1.M9I45E Arachis hypogaea HOM05D004331 ORTHO05D004984 3.9e-105 385.6 251 75.7
BcaC02g12734 Brassica carinata HOM05D004331 ORTHO05D004984 5.1e-105 385.2 240 78.8
A05p01900 Brassica napus HOM05D004331 ORTHO05D004984 5.1e-105 385.2 240 78.8
C04p02240 Brassica napus HOM05D004331 ORTHO05D004984 5.1e-105 385.2 240 78.8
BolC4t21871H Brassica oleracea HOM05D004331 ORTHO05D004984 5.1e-105 385.2 240 78.8
BraA05t19188Z Brassica rapa HOM05D004331 ORTHO05D004984 5.1e-105 385.2 240 78.8
A09p49380 Brassica napus HOM05D004331 ORTHO05D004984 6.7e-105 384.8 252 77.0
BraA09t40391Z Brassica rapa HOM05D004331 ORTHO05D004984 6.7e-105 384.8 252 77.0
CANSAT56G0386 Cannabis sativa HOM05D004331 ORTHO05D004984 6.7e-105 384.8 331 63.1
MELO3C022105.2 Cucumis melo HOM05D004331 ORTHO05D004984 6.7e-105 384.8 254 77.6
AT3G56430 Arabidopsis thaliana HOM05D004331 ORTHO05D004984 8.7e-105 384.4 251 75.7
Glyma.06G141000 Glycine max HOM05D004331 ORTHO05D004984 8.7e-105 384.4 252 75.4
Cpa.g.sc19.35 Carica papaya HOM05D004331 ORTHO05D004984 1.5e-104 383.6 263 73.4
Ca_16853_v3 Cicer arietinum L. HOM05D004331 ORTHO05D004984 1.9e-104 383.3 256 75.4
Ca_29501_v3 Cicer arietinum L. HOM05D004331 ORTHO05D004984 1.9e-104 383.3 256 75.4
Sp4g23120 Schrenkiella parvula HOM05D004331 ORTHO05D004984 1.9e-104 383.3 240 78.3
AL4G38690 Arabidopsis lyrata HOM05D004331 ORTHO05D004984 2.5e-104 382.9 240 78.3
Aa31LG10G11310 Aethionema arabicum HOM05D004331 ORTHO05D004984 4.3e-104 382.1 251 75.7
Carub.0005s2321 Capsella rubella HOM05D004331 ORTHO05D004984 5.7e-104 381.7 251 74.9
AL5G37760 Arabidopsis lyrata HOM05D004331 ORTHO05D004984 7.4e-104 381.3 251 75.3
Duzib128G0601 Durio zibethinus HOM05D004331 ORTHO05D004984 7.4e-104 381.3 303 66.3
Phvul.009G042200 Phaseolus vulgaris HOM05D004331 ORTHO05D004984 1.3e-103 380.6 255 73.3
Psat5g069640 Pisum sativum HOM05D004331 ORTHO05D004984 1.6e-103 380.2 256 75.0
CARHR135900 Cardamine hirsuta HOM05D004331 ORTHO05D004984 2.1e-103 379.8 240 77.5
Sc11g0006070 Simmondsia chinensis HOM05D004331 ORTHO05D004984 2.8e-103 379.4 243 75.3
Thecc.10G186200 Theobroma cacao HOM05D004331 ORTHO05D004984 2.8e-103 379.4 264 72.7
TAR636G1774 Trochodendron aralioides HOM05D004331 ORTHO05D004984 2.8e-103 379.4 253 75.1
VMungo1309G0248 Vigna mungo HOM05D004331 ORTHO05D004984 2.8e-103 379.4 255 72.5
Medtr3g093690 Medicago truncatula HOM05D004331 ORTHO05D004984 3.7e-103 379.0 255 74.9
PGR142G0580 Punica granatum HOM05D004331 ORTHO05D004984 3.7e-103 379.0 247 77.7
TPR.G13966 Trifolium pratense HOM05D004331 ORTHO05D004984 3.7e-103 379.0 250 75.6
AT2G40800 Arabidopsis thaliana HOM05D004331 ORTHO05D004984 4.8e-103 378.6 240 76.7
Ciclev10031884m.g Citrus clementina HOM05D004331 ORTHO05D004984 4.8e-103 378.6 253 74.3
MBI15_g36678_MAGBIO Magnolia biondii HOM05D004331 ORTHO05D004984 2.4e-102 376.3 226 80.5
Sabra19G0075700 Salix brachista HOM05D004331 ORTHO05D004984 2.4e-102 376.3 365 58.9
Lalb_Chr11g0067651 Lupinus albus HOM05D004331 ORTHO05D004984 3.1e-102 375.9 259 74.1
Sabra19G0081100 Salix brachista HOM05D004331 ORTHO05D004984 3.1e-102 375.9 365 58.9
Lj1g0025811 Lotus japonicus HOM05D004331 ORTHO05D004984 4.1e-102 375.6 260 69.6
ATR1127G084 Amborella trichopoda HOM05D004331 ORTHO05D004984 6.9e-102 374.8 269 70.6
MSTRG.156 Avicennia marina HOM05D004331 ORTHO05D004984 9.0e-102 374.4 234 78.2
Glyma.04G223900 Glycine max HOM05D004331 ORTHO05D004984 9.0e-102 374.4 252 73.0
Nitab4.5_0009756g0010 Nicotiana tabacum HOM05D004331 ORTHO05D004984 9.0e-102 374.4 248 74.6
THA.LOC104824369 Tarenaya hassleriana HOM05D004331 ORTHO05D004984 1.2e-101 374.0 257 73.2
Nn5g26801 Nelumbo nucifera HOM05D004331 ORTHO05D004984 2.6e-101 372.9 257 73.2
Gohir.D10G184000 Gossypium hirsutum HOM05D004331 ORTHO05D004984 3.4e-101 372.5 262 72.1
Gorai.011G206200 Gossypium raimondii HOM05D004331 ORTHO05D004984 3.4e-101 372.5 262 72.1
Duzib114G0903 Durio zibethinus HOM05D004331 ORTHO05D004984 7.6e-101 371.3 263 71.9
Eucgr.L02349 Eucalyptus grandis HOM05D004331 ORTHO05D004984 7.6e-101 371.3 246 74.4
Dinv34508 Davidia involucrata HOM05D004331 ORTHO05D004984 1.3e-100 370.5 254 72.8
HanXRQChr07g0204811 Helianthus annuus HOM05D004331 ORTHO05D004984 1.3e-100 370.5 240 76.2
Aqoxy4G03301 Aquilegia oxysepala HOM05D004331 ORTHO05D004984 2.9e-100 369.4 230 79.1
EL10Ac2g02684 Beta vulgaris HOM05D004331 ORTHO05D004984 2.9e-100 369.4 247 74.5
PGSC0003DMG400005253 Solanum tuberosum HOM05D004331 ORTHO05D004984 2.9e-100 369.4 246 74.0
Eucgr.G03152 Eucalyptus grandis HOM05D004331 ORTHO05D004984 3.8e-100 369.0 246 74.8
BolC8t50795H Brassica oleracea HOM05D004331 ORTHO05D004984 5.0e-100 368.6 216 83.3
Sopen03g025450 Solanum pennellii HOM05D004331 ORTHO05D004984 5.0e-100 368.6 248 73.4
THA.LOC104814366 Tarenaya hassleriana HOM05D004331 ORTHO05D004984 5.0e-100 368.6 243 74.5
Solyc03g095470.3 Solanum lycopersicum HOM05D004331 ORTHO05D004984 1.1e-99 367.5 248 73.0
SEGI_36006 Sequoiadendron giganteum HOM05D004331 ORTHO05D004984 1.4e-99 367.1 229 77.3
CSS0028422 Camellia sinensis var. sinensis HOM05D004331 ORTHO05D004984 1.9e-99 366.7 253 72.7
DCAR_020157 Daucus carota HOM05D004331 ORTHO05D004984 3.2e-99 365.9 231 77.1
Hma1.2p1_0264F.1_g105850 Hydrangea macrophylla HOM05D004331 ORTHO05D004984 3.2e-99 365.9 250 73.2
Lalb_Chr08g0239281 Lupinus albus HOM05D004331 ORTHO05D004984 3.2e-99 365.9 246 72.4
Os01g0168300 Oryza sativa ssp. japonica HOM05D004331 ORTHO05D004984 3.2e-99 365.9 227 80.2
AUR62032546 Chenopodium quinoa HOM05D004331 ORTHO05D004984 4.2e-99 365.5 234 76.1
Actinidia07780 Actinidia chinensis HOM05D004331 ORTHO05D004984 5.5e-99 365.2 304 64.1
CAN.G30.2 Capsicum annuum HOM05D004331 ORTHO05D004984 5.5e-99 365.2 249 73.1
Gohir.A10G177400 Gossypium hirsutum HOM05D004331 ORTHO05D004984 7.2e-99 364.8 259 71.4
Peaxi162Scf00073g02119 Petunia axillaris HOM05D004331 ORTHO05D004984 9.3e-99 364.4 249 72.3
COL.COLO4_19485 Corchorus olitorius HOM05D004331 ORTHO05D004984 1.6e-98 363.6 264 70.8
Lj1A969T93 Lonicera japonica HOM05D004331 ORTHO05D004984 3.5e-98 362.5 236 74.6
Actinidia01013 Actinidia chinensis HOM05D004331 ORTHO05D004984 6.1e-98 361.7 248 71.8
Migut.F00564 Erythranthe guttata HOM05D004331 ORTHO05D004984 7.9e-98 361.3 262 69.8
vmacro09950 Vaccinium macrocarpon HOM05D004331 ORTHO05D004984 2.3e-97 359.8 246 71.5
Lsat_1_v5_gn_2_127600 Lactuca sativa HOM05D004331 ORTHO05D004984 3.0e-97 359.4 238 75.2
SGA_v2.0_scaffold397G50761 Striga asiatica HOM05D004331 ORTHO05D004984 3.0e-97 359.4 251 72.1
Hund13431 Selenicereus undatus HOM05D004331 ORTHO05D004984 3.9e-97 359.0 234 74.8
Rhsim09G0186700 Rhododendron simsii HOM05D004331 ORTHO05D004984 2.5e-96 356.3 223 77.6
SalBow3G0869 Salvia bowleyana HOM05D004331 ORTHO05D004984 3.3e-96 355.9 233 73.0
unitig_88.g27825 Utricularia gibba HOM05D004331 ORTHO05D004984 4.8e-95 352.1 248 69.8
FAN01G2544 Fragaria x ananassa HOM05D004331 ORTHO05D004984 8.2e-95 351.3 181 98.3
PSO170G2208 Papaver somniferum HOM05D004331 ORTHO05D004984 2.0e-93 346.7 251 69.3
PSO017G4126 Papaver somniferum HOM05D004331 ORTHO05D004984 3.4e-93 345.9 251 69.7
HPP92_012570 Vanilla planifolia HOM05D004331 ORTHO05D004984 1.0e-92 344.4 243 70.0
ECA238G1814 Erigeron canadensis HOM05D004331 ORTHO05D004984 9.4e-91 337.8 231 71.4
AagrBONN_evm.TU.Sc2ySwM_340.90 Anthoceros agrestis HOM05D004331 ORTHO05D004984 1.4e-86 323.9 231 69.7
Dinv21866 Davidia involucrata HOM05D004331 ORTHO05D004984 4.1e-86 322.4 193 80.8
SGA_v2.0_scaffold60G20876 Striga asiatica HOM05D004331 ORTHO05D004984 5.3e-86 322.0 241 66.0
Pp3c7_18440 Physcomitrium patens HOM05D004331 ORTHO05D004984 1.5e-85 320.5 226 70.8
BcaC07g39957 Brassica carinata HOM05D004331 ORTHO05D004984 1.7e-84 317.0 250 66.8
Mapoly0158s0020 Marchantia polymorpha HOM05D004331 ORTHO05D004984 6.5e-84 315.1 234 65.8
GSVIVG01032862001 Vitis vinifera HOM05D004331 ORTHO05D004984 4.2e-83 312.4 178 87.1
Pp3c1_5190 Physcomitrium patens HOM05D004331 ORTHO05D004984 1.2e-82 310.8 227 67.8
C08p31740 Brassica napus HOM05D004331 ORTHO05D004984 1.3e-79 300.8 250 66.4
Cc02_g05110 Coffea canephora HOM05D004331 ORTHO05D004984 2.2e-79 300.1 179 83.2
CBR_g29882 Chara braunii HOM05D004331 ORTHO05D004984 1.3e-76 290.8 223 63.7
Actinidia13632 Actinidia chinensis HOM05D004331 ORTHO05D004984 2.9e-76 289.7 214 69.6
SMO199G0115 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 5.0e-76 288.9 219 63.9
SMO361G0183 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 8.5e-76 288.1 218 63.8
Nitab4.5_0018056g0010 Nicotiana tabacum HOM05D004331 ORTHO05D004984 4.8e-71 272.3 189 71.4
CiPaw.02G199300 Carya illinoinensis HOM05D004331 ORTHO05D004984 2.4e-70 270.0 183 73.2
Oeu039397.2 Olea europaea HOM05D004331 ORTHO05D004984 5.5e-67 258.8 167 77.2
Zm00001eb336450 Zea mays HOM05D004331 ORTHO05D004984 2.0e-64 250.4 148 82.4
AUR62030578 Chenopodium quinoa HOM05D004331 ORTHO05D004984 7.5e-64 248.4 151 79.5
Prupe.2G266500 Prunus persica HOM05D004331 ORTHO05D004984 4.8e-63 245.7 317 48.6
CiPaw.01G307700 Carya illinoinensis HOM05D004331 ORTHO05D004984 1.9e-59 233.8 133 85.0
Ah.10g029610 Amaranthus hybridus HOM05D000033 ORTHO05D000913 3.1e-54 216.5 131 79.4
SMO361G0787 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 1.6e-53 214.2 216 49.1
SMO361G0173 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 4.5e-53 212.6 216 48.6
Manes.03G048500 Manihot esculenta HOM05D004331 ORTHO05D004984 1.7e-47 194.1 255 46.3
BcaC04g21857 Brassica carinata HOM05D004331 ORTHO05D004984 1.0e-44 184.9 104 85.6
BcaC09g50949 Brassica carinata HOM05D004331 ORTHO05D004984 1.0e-44 184.9 104 86.5
Carub.0004s2310 Capsella rubella HOM05D004331 ORTHO05D004984 1.7e-44 184.1 240 46.2
BcaC09g50388 Brassica carinata HOM05D004331 ORTHO05D004984 2.3e-44 183.7 104 84.6
BolC1t02551H Brassica oleracea HOM05D004331 ORTHO05D004984 1.1e-43 181.4 104 83.7
BcaC02g11378 Brassica carinata HOM05D004331 ORTHO05D004984 2.5e-43 180.3 104 84.6
C04p16400 Brassica napus HOM05D004331 ORTHO05D004984 2.5e-43 180.3 104 84.6
C09p26570 Brassica napus HOM05D004331 ORTHO05D004984 3.3e-43 179.9 104 83.7
BolC9t55553H Brassica oleracea HOM05D004331 ORTHO05D004984 3.3e-43 179.9 104 83.7
C01p26060 Brassica napus HOM05D004331 ORTHO05D004984 1.2e-42 177.9 104 82.7
C01p18940 Brassica napus HOM05D004331 ORTHO05D004984 3.6e-42 176.4 102 83.3
BolC1t01820H Brassica oleracea HOM05D004331 ORTHO05D004984 3.6e-42 176.4 102 83.3
PRCOL_00001688 Prasinoderma coloniale HOM05D004331 ORTHO05D004984 1.0e-41 174.9 242 39.7
MSTRG.8387 Avicennia marina HOM05D004331 ORTHO05D004984 2.0e-40 170.6 250 41.6
Cre05.g232752 Chlamydomonas reinhardtii HOM05D004331 ORTHO05D004984 1.3e-39 167.9 260 36.9
Actinidia31642 Actinidia chinensis HOM05D004331 ORTHO05D004984 5.6e-35 152.5 158 57.0
SHI31864 Sapria himalayana HOM05D004331 ORTHO05D004984 1.8e-33 147.5 91 78.0
BcaC04g23398 Brassica carinata HOM05D004331 ORTHO05D004984 3.7e-31 139.8 104 69.2
BcaC01g00580 Brassica carinata HOM05D003032 ORTHO05D003456 8.3e-31 138.7 76 92.1
C03p81590 Brassica napus HOM05D004331 ORTHO05D004984 8.3e-31 138.7 76 92.1
BolC3t20429H Brassica oleracea HOM05D004331 ORTHO05D004984 8.3e-31 138.7 76 92.1
HPP92_012539 Vanilla planifolia HOM05D004331 ORTHO05D004984 7.1e-30 135.6 118 61.9
CiPaw.01G307900 Carya illinoinensis HOM05D004331 ORTHO05D004984 7.8e-29 132.1 101 68.3
Ah.10g029620 Amaranthus hybridus HOM05D004331 ORTHO05D004984 8.6e-28 128.6 112 62.5
MBI15_g10655_MAGBIO Magnolia biondii HOM05D004331 ORTHO05D004984 1.1e-27 128.3 111 59.5
AUR62030577 Chenopodium quinoa HOM05D004331 ORTHO05D004984 1.6e-26 124.4 97 63.9
Eucgr.G03162 Eucalyptus grandis HOM05D004331 ORTHO05D004984 9.9e-24 115.2 106 59.4
Zm00001eb123190 Zea mays HOM05D004331 ORTHO05D004984 1.1e-22 111.7 86 65.1
BolC9t53789H Brassica oleracea HOM05D004331 ORTHO05D004984 3.0e-20 103.6 57 89.5
SHI31865 Sapria himalayana HOM05D004331 ORTHO05D004984 3.9e-20 103.2 90 52.2
Aqoxy4G02083 Aquilegia oxysepala HOM05D004331 ORTHO05D004984 1.1e-19 101.7 63 74.6
SHI31863 Sapria himalayana HOM05D004331 ORTHO05D004984 7.3e-19 99.0 59 74.6
MCO04G099 Micromonas commoda HOM05D004331 ORTHO05D004984 1.4e-17 94.7 159 32.1
BraA04t18575Z Brassica rapa HOM05D004331 ORTHO05D016805 1.9e-14 84.3 44 93.2
VMungo0540G1227 Vigna mungo HOM05D004331 ORTHO05D004984 2.4e-14 84.0 52 75.0
BolC4t28360H Brassica oleracea HOM05D004331 ORTHO05D004984 1.3e-12 78.2 71 59.2
C08p13890 Brassica napus HOM05D013285 ORTHO05D004984 1.7e-12 77.8 48 81.2


User provided reference genes

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