Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G2611 Fragaria x ananassa HOM05D001997 ORTHO05D004620 0.0e+00 1191.8 647 100.0
FAN10G3464 Fragaria x ananassa HOM05D001997 ORTHO05D004620 0.0e+00 1191.8 647 100.0
FAN10G4317 Fragaria x ananassa HOM05D001997 ORTHO05D004620 0.0e+00 1170.6 647 98.8
FvH4_7g14000 Fragaria vesca HOM05D001997 ORTHO05D004620 0.0e+00 1162.9 647 98.0
FAN06G3325 Fragaria x ananassa HOM05D001997 ORTHO05D004620 0.0e+00 1162.9 647 98.0
FAN03G0113 Fragaria x ananassa HOM05D001997 ORTHO05D004620 0.0e+00 1162.5 647 97.7
FAN01G1889 Fragaria x ananassa HOM05D001997 ORTHO05D004620 0.0e+00 1155.2 647 97.1
FAN06G4213 Fragaria x ananassa HOM05D001997 ORTHO05D004620 0.0e+00 1150.2 647 97.1
RcHm_v2.0_Chr1g0354651 Rosa chinensis HOM05D001997 ORTHO05D004620 0.0e+00 1088.9 647 90.4
MD07G1139400 Malus domestica HOM05D001997 ORTHO05D004620 6.6e-250 867.5 647 73.0
Prupe.2G167200 Prunus persica HOM05D001997 ORTHO05D004620 3.4e-246 855.1 647 73.0
Cfa015772 Carpinus fangiana HOM05D001997 ORTHO05D004620 3.9e-234 815.1 647 67.1
QL10p047463 Quercus lobata HOM05D001997 ORTHO05D004620 3.3e-233 812.0 646 66.1
Haze_00722 Corylus avellana HOM05D001997 ORTHO05D004620 1.3e-226 790.0 637 66.7
Sabra17G0022600 Salix brachista HOM05D001997 ORTHO05D004620 2.2e-221 772.7 647 62.8
Potri.017G035700 Populus trichocarpa HOM05D001997 ORTHO05D004620 6.5e-221 771.2 647 62.9
Hma1.2p1_0597F.1_g186510 Hydrangea macrophylla HOM05D001997 ORTHO05D004620 5.5e-220 768.1 650 62.9
CANSAT21G1219 Cannabis sativa HOM05D001997 ORTHO05D004620 9.4e-220 767.3 648 63.6
Potri.007G124700 Populus trichocarpa HOM05D001997 ORTHO05D004620 7.9e-219 764.2 653 61.7
Atru.chr3.1570 Acer truncatum HOM05D001997 ORTHO05D004620 1.3e-216 756.9 647 62.0
Atru.chr3.1589 Acer truncatum HOM05D001997 ORTHO05D004620 1.3e-216 756.9 647 62.0
Manes.04G048600 Manihot esculenta HOM05D001997 ORTHO05D004620 1.4e-215 753.4 649 60.6
Ciclev10019328m.g Citrus clementina HOM05D001997 ORTHO05D004620 3.2e-212 742.3 647 61.2
Dinv22695 Davidia involucrata HOM05D001997 ORTHO05D004620 1.4e-210 736.9 646 61.5
CiPaw.02G056300 Carya illinoinensis HOM05D001997 ORTHO05D004620 2.3e-210 736.1 636 62.3
TWI36G0125 Tripterygium wilfordii HOM05D001997 ORTHO05D004620 5.7e-209 731.5 647 60.3
Lj6C60T7 Lonicera japonica HOM05D001997 ORTHO05D004620 1.8e-207 726.5 651 60.1
Duzib093G0427 Durio zibethinus HOM05D001997 ORTHO05D004620 3.1e-207 725.7 649 61.0
Rhsim09G0030400 Rhododendron simsii HOM05D001997 ORTHO05D004620 5.3e-207 724.9 651 60.1
Gorai.006G186500 Gossypium raimondii HOM05D001997 ORTHO05D004620 2.6e-201 706.1 649 59.0
PGR044G1365 Punica granatum HOM05D001997 ORTHO05D004620 3.1e-199 699.1 648 58.3
Gorai.004G087500 Gossypium raimondii HOM05D001997 ORTHO05D004620 1.6e-198 696.8 648 58.0
TAR622G0498 Trochodendron aralioides HOM05D001997 ORTHO05D004620 3.5e-198 695.7 652 58.6
Gohir.D08G083300 Gossypium hirsutum HOM05D001997 ORTHO05D004620 1.0e-197 694.1 649 57.9
Gohir.A08G074100 Gossypium hirsutum HOM05D001997 ORTHO05D004620 1.9e-196 689.9 648 58.0
TAR636G0474 Trochodendron aralioides HOM05D001997 ORTHO05D004620 7.2e-196 688.0 652 58.1
CSS0007184 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D004620 2.7e-195 686.0 616 60.4
Actinidia35961 Actinidia chinensis HOM05D001997 ORTHO05D004620 3.6e-195 685.6 650 57.5
Peaxi162Scf00375g00082 Petunia axillaris HOM05D001997 ORTHO05D004620 1.7e-192 676.8 651 58.4
Sc19g0002180 Simmondsia chinensis HOM05D001997 ORTHO05D004620 1.3e-189 667.2 647 56.4
Glyma.11G094600 Glycine max HOM05D001997 ORTHO05D004620 2.9e-189 666.0 643 57.9
Sopen06g029850 Solanum pennellii HOM05D001997 ORTHO05D004620 1.1e-188 664.1 661 56.3
Cc01_g08750 Coffea canephora HOM05D001997 ORTHO05D004620 3.2e-188 662.5 677 55.5
Lsat_1_v5_gn_6_55020 Lactuca sativa HOM05D001997 ORTHO05D004620 2.1e-187 659.8 647 55.8
PGSC0003DMG400026903 Solanum tuberosum HOM05D001997 ORTHO05D004620 2.1e-187 659.8 661 56.1
Nitab4.5_0010690g0010 Nicotiana tabacum HOM05D001997 ORTHO05D004620 1.8e-186 656.8 651 56.7
THA.LOC104802304 Tarenaya hassleriana HOM05D001997 ORTHO05D004620 5.2e-186 655.2 649 56.1
Thecc.05G002900 Theobroma cacao HOM05D001997 ORTHO05D004620 2.0e-185 653.3 649 55.3
Oeu015677.2 Olea europaea HOM05D001997 ORTHO05D004620 2.8e-184 649.4 671 55.0
MSTRG.17660 Avicennia marina HOM05D001997 ORTHO05D004620 3.1e-183 646.0 666 54.4
AT2G43250 Arabidopsis thaliana HOM05D001997 ORTHO05D004620 9.1e-183 644.4 644 55.3
CARHR138340 Cardamine hirsuta HOM05D001997 ORTHO05D004620 2.7e-182 642.9 647 55.0
Lj3g0010188 Lotus japonicus HOM05D001997 ORTHO05D004620 2.7e-182 642.9 668 54.3
Thhalv10001801m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 1.7e-181 640.2 647 54.4
Phvul.011G023500 Phaseolus vulgaris HOM05D001997 ORTHO05D004620 1.5e-180 637.1 653 55.4
Sp4g25380 Schrenkiella parvula HOM05D001997 ORTHO05D004620 7.2e-180 634.8 647 54.4
AUR62035000 Chenopodium quinoa HOM05D001997 ORTHO05D004620 1.2e-179 634.0 652 53.2
MSTRG.12412 Avicennia marina HOM05D001997 ORTHO05D004620 3.6e-179 632.5 659 54.5
VMungo1127G1251 Vigna mungo HOM05D001997 ORTHO05D004620 1.5e-177 627.1 650 54.2
Glyma.03G127700 Glycine max HOM05D001997 ORTHO05D004620 2.0e-177 626.7 659 54.5
Ca_26058_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 2.6e-177 626.3 666 52.6
arahy.Tifrunner.gnm1.ann1.JTZ133 Arachis hypogaea HOM05D001997 ORTHO05D004620 3.4e-177 625.9 638 53.4
HanXRQChr02g0057961 Helianthus annuus HOM05D001997 ORTHO05D004620 2.4e-175 619.8 647 53.5
MBI11_g35030_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D004620 3.1e-175 619.4 650 53.7
Psat7g172720 Pisum sativum HOM05D001997 ORTHO05D004620 9.2e-175 617.8 661 52.3
AL4G41910 Arabidopsis lyrata HOM05D001997 ORTHO05D004620 1.3e-173 614.0 644 53.6
Ca_30128_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 1.7e-173 613.6 654 52.6
Dinv05995 Davidia involucrata HOM05D001997 ORTHO05D004620 2.9e-173 612.8 643 53.0
ECA233G5997 Erigeron canadensis HOM05D001997 ORTHO05D004620 3.8e-173 612.5 644 52.5
TPR.G13756 Trifolium pratense HOM05D001997 ORTHO05D004620 5.0e-173 612.1 664 53.0
BcaC02g07197 Brassica carinata HOM05D001997 ORTHO05D004620 2.1e-171 606.7 639 54.0
A04p32530 Brassica napus HOM05D001997 ORTHO05D004620 2.1e-171 606.7 647 53.6
C04p70220 Brassica napus HOM05D001997 ORTHO05D004620 2.1e-171 606.7 647 53.3
BolC4t28526H Brassica oleracea HOM05D001997 ORTHO05D004620 2.8e-171 606.3 639 54.0
BraA04t18717Z Brassica rapa HOM05D001997 ORTHO05D004620 2.3e-170 603.2 648 53.7
HanXRQChr07g0186151 Helianthus annuus HOM05D001997 ORTHO05D004620 9.8e-169 597.8 643 52.7
Ah.05g167000 Amaranthus hybridus HOM05D001997 ORTHO05D004620 1.3e-168 597.4 637 52.4
Sabra17G0022300 Salix brachista HOM05D001997 ORTHO05D004620 2.4e-167 593.2 581 56.5
Migut.N02417 Erythranthe guttata HOM05D001997 ORTHO05D004620 1.6e-166 590.5 657 52.8
SGA_v2.0_scaffold16G07570 Striga asiatica HOM05D001997 ORTHO05D004620 2.3e-165 586.6 660 53.6
Aqoxy7G03960 Aquilegia oxysepala HOM05D001997 ORTHO05D004620 5.0e-165 585.5 654 50.3
AUR62037461 Chenopodium quinoa HOM05D001997 ORTHO05D004620 5.0e-165 585.5 652 51.2
Medtr4g076620 Medicago truncatula HOM05D001997 ORTHO05D004620 8.6e-165 584.7 661 51.1
BcaB06g29293 Brassica carinata HOM05D001997 ORTHO05D004620 1.6e-163 580.5 626 54.6
PSO675G0019 Papaver somniferum HOM05D001997 ORTHO05D004620 3.2e-159 566.2 675 48.4
DCAR_010832 Daucus carota HOM05D001997 ORTHO05D004620 1.6e-158 563.9 603 52.7
PSO017G4366 Papaver somniferum HOM05D001997 ORTHO05D004620 7.8e-158 561.6 673 48.0
arahy.Tifrunner.gnm1.ann1.7X5TTD Arachis hypogaea HOM05D001997 ORTHO05D004620 1.6e-155 553.9 653 49.9
Medtr4g076640 Medicago truncatula HOM05D001997 ORTHO05D004620 8.1e-155 551.6 642 49.4
Oeu048804.2 Olea europaea HOM05D001997 ORTHO05D004620 6.8e-154 548.5 638 49.2
Nitab4.5_0002368g0100 Nicotiana tabacum HOM05D001997 ORTHO05D004620 2.0e-153 547.0 567 55.4
Carub.0004s2573 Capsella rubella HOM05D001997 ORTHO05D004620 1.3e-152 544.3 646 50.0
TPR.G13749 Trifolium pratense HOM05D001997 ORTHO05D004620 2.9e-152 543.1 666 47.7
Lj4g0020139 Lotus japonicus HOM05D001997 ORTHO05D004620 2.7e-150 536.6 639 50.1
CDE08G0116 Ceratophyllum demersum HOM05D001997 ORTHO05D004620 6.0e-150 535.4 632 48.9
unitig_22.g6172 Utricularia gibba HOM05D001997 ORTHO05D004620 7.8e-150 535.0 661 49.6
Glyma.12G021000 Glycine max HOM05D001997 ORTHO05D004620 4.3e-148 529.3 629 50.7
HPP92_007608 Vanilla planifolia HOM05D001997 ORTHO05D004620 1.2e-145 521.2 645 46.2
Gohir.D09G164700 Gossypium hirsutum HOM05D001997 ORTHO05D004620 2.7e-142 510.0 469 59.9
Gohir.A09G169000 Gossypium hirsutum HOM05D001997 ORTHO05D004620 1.0e-141 508.1 469 59.9
ATR0743G280 Amborella trichopoda HOM05D001997 ORTHO05D004620 2.4e-138 496.9 672 45.1
Eucgr.A00056 Eucalyptus grandis HOM05D001997 ORTHO05D004620 3.1e-138 496.5 444 60.6
Solyc06g073490.2 Solanum lycopersicum HOM05D001997 ORTHO05D004620 1.7e-133 480.7 441 60.1
Os04g0490700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D004620 3.0e-133 479.9 677 42.8
Zm00001eb425530 Zea mays HOM05D001997 ORTHO05D004620 3.0e-133 479.9 685 43.6
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 2.6e-129 466.8 648 41.8
Cfa015264 Carpinus fangiana HOM05D001997 ORTHO05D004620 1.7e-128 464.2 650 42.0
Nn5g27952 Nelumbo nucifera HOM05D001997 ORTHO05D004620 2.9e-128 463.4 513 49.9
MD01G1056400 Malus domestica HOM05D001997 ORTHO05D004620 1.6e-126 457.6 404 60.6
Lalb_Chr01g0001101 Lupinus albus HOM05D001997 ORTHO05D004620 1.1e-124 451.4 430 56.7
SEGI_28245 Sequoiadendron giganteum HOM05D001997 ORTHO05D004620 1.4e-119 434.5 681 40.2
Thhalv10001772m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 6.0e-118 429.1 640 44.7
C08p23950 Brassica napus HOM05D001997 ORTHO05D004620 7.4e-108 395.6 645 41.2
Glyma.19G130251 Glycine max HOM05D001997 ORTHO05D004620 2.8e-107 393.7 349 61.0
Cpa.g.sc81.168 Carica papaya HOM05D001997 ORTHO05D004620 1.0e-104 385.2 648 39.0
SalBow3G0527 Salvia bowleyana HOM05D001997 ORTHO05D004620 1.2e-102 378.3 361 59.6
BraA05t19355Z Brassica rapa HOM05D001997 ORTHO05D004620 6.9e-98 362.5 632 40.0
GSVIVG01013581001 Vitis vinifera HOM05D001997 ORTHO05D004620 1.0e-96 358.6 404 50.5
A05p03690 Brassica napus HOM05D001997 ORTHO05D004620 2.2e-96 357.5 632 39.7
C04p04300 Brassica napus HOM05D001997 ORTHO05D004620 5.5e-95 352.8 636 39.8
BcaC07g39373 Brassica carinata HOM05D001997 ORTHO05D004620 9.4e-95 352.1 624 39.4
BolC8t50019H Brassica oleracea HOM05D001997 ORTHO05D004620 1.6e-94 351.3 645 38.4
RcHm_v2.0_Chr1g0373181 Rosa chinensis HOM05D001997 ORTHO05D004620 1.8e-93 347.8 625 38.9
BolC4t22066H Brassica oleracea HOM05D001997 ORTHO05D004620 2.3e-93 347.4 636 39.5
A06p18770 Brassica napus HOM05D001997 ORTHO05D004620 5.9e-89 332.8 644 37.9
FvH4_7g26521 Fragaria vesca HOM05D001997 ORTHO05D004620 5.9e-89 332.8 626 38.8
FAN06G2538 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.3e-80 305.1 622 37.3
Mapoly0021s0032 Marchantia polymorpha HOM05D001997 ORTHO05D004620 1.3e-80 305.1 671 32.3
FAN03G0465 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.1e-79 302.0 622 37.3
FAN10G3679 Fragaria x ananassa HOM05D001997 ORTHO05D004620 3.1e-74 283.9 561 37.1
BcaNung06617 Brassica carinata HOM05D001997 ORTHO05D004620 3.8e-64 250.4 609 35.0
FAN01G2316 Fragaria x ananassa HOM05D001997 ORTHO05D004620 3.8e-64 250.4 577 34.3
BraA06t24958Z Brassica rapa HOM05D001997 ORTHO05D004620 4.1e-50 203.8 413 35.8
Pp3c13_12610 Physcomitrium patens HOM05D001997 ORTHO05D004620 2.7e-49 201.1 653 27.3
TPR.G11744 Trifolium pratense HOM05D001997 ORTHO05D004620 4.3e-47 193.7 329 39.8
GSVIVG01013582001 Vitis vinifera HOM05D001997 ORTHO05D004620 7.5e-44 183.0 186 54.3
Actinidia28986 Actinidia chinensis HOM05D001997 ORTHO05D004620 9.8e-44 182.6 314 40.4
BcaB06g29296 Brassica carinata HOM05D001997 ORTHO05D004620 2.7e-41 174.5 202 53.5
BcaC07g39374 Brassica carinata HOM05D001997 ORTHO05D004620 3.7e-35 154.1 153 53.6
Lsat_1_v5_gn_5_125441 Lactuca sativa HOM05D001997 ORTHO05D004620 1.1e-34 152.5 121 68.6
CAN.G46.28 Capsicum annuum HOM05D001997 ORTHO05D004620 1.4e-34 152.1 115 66.1
CAN.G138.1 Capsicum annuum HOM05D001997 ORTHO05D004620 4.1e-34 150.6 134 59.7
SHI06486 Sapria himalayana HOM05D002588 ORTHO05D002979 1.1e-31 142.5 133 61.7
MD01G1056500 Malus domestica HOM05D001997 ORTHO05D004620 1.2e-30 139.0 90 75.6
C04p70240 Brassica napus HOM05D001997 ORTHO05D004620 2.4e-29 134.8 108 64.8
CAN.G1014.21 Capsicum annuum HOM05D001997 ORTHO05D004620 1.9e-26 125.2 94 67.0
BcaB01g03399 Brassica carinata HOM05D001997 ORTHO05D004620 3.2e-26 124.4 368 31.0
CAN.G765.4 Capsicum annuum HOM05D001997 ORTHO05D004620 3.5e-25 120.9 94 63.8
BcaB06g29294 Brassica carinata HOM05D001997 ORTHO05D004620 4.6e-25 120.6 155 48.4
BcaC02g07196 Brassica carinata HOM05D001997 ORTHO05D004620 3.3e-23 114.4 90 64.4
Dinv44213 Davidia involucrata HOM05D001997 ORTHO05D004620 8.1e-22 109.8 66 78.8
BcaB06g29295 Brassica carinata HOM05D001997 ORTHO05D004620 2.4e-21 108.2 90 62.2
BolC4t28528H Brassica oleracea HOM05D001997 ORTHO05D004620 4.0e-21 107.5 111 55.9
BolC4t28530H Brassica oleracea HOM05D001997 ORTHO05D004620 1.3e-19 102.4 144 45.8
SalBow3G4162 Salvia bowleyana HOM05D001997 ORTHO05D004620 2.9e-19 101.3 97 53.6
AagrBONN_evm.TU.Sc2ySwM_228.3298 Anthoceros agrestis HOM05D001997 ORTHO05D004620 1.1e-18 99.4 187 34.8
SalBow3G4229 Salvia bowleyana HOM05D001997 ORTHO05D004620 9.3e-18 96.3 113 48.7
Medtr4g076610 Medicago truncatula HOM05D001997 ORTHO05D004620 8.7e-16 89.7 85 52.9
Actinidia11446 Actinidia chinensis HOM05D001997 ORTHO05D004620 1.9e-15 88.6 196 36.2
SGA_v2.0_scaffold4G02500 Striga asiatica HOM05D001997 ORTHO05D004620 8.1e-14 83.2 70 58.6
C04p70260 Brassica napus HOM05D001997 ORTHO05D004620 1.8e-13 82.0 232 31.5
SMO356G0473 Selaginella moellendorffii HOM05D001997 ORTHO05D004620 3.1e-13 81.3 204 32.4
A04p32560 Brassica napus HOM05D001997 ORTHO05D004620 9.0e-13 79.7 232 31.0
BraA04t18720Z Brassica rapa HOM05D001997 ORTHO05D004620 9.0e-13 79.7 232 31.0
TPR.G290 Trifolium pratense HOM05D001997 ORTHO05D004620 2.4e-10 71.6 51 66.7
BcaNung06616 Brassica carinata HOM05D001997 ORTHO05D004620 7.1e-10 70.1 96 42.7
FAN10G4060 Fragaria x ananassa HOM05D001997 ORTHO05D004620 7.1e-10 70.1 279 25.8
BcaC05g28816 Brassica carinata HOM05D001997 ORTHO05D004620 9.3e-10 69.7 80 50.0
C03p28740 Brassica napus HOM05D001997 ORTHO05D004620 6.7e-08 63.5 60 53.3
Hund00190 Selenicereus undatus HOM05D001997 ORTHO05D004620 1.5e-07 62.4 121 38.8
BcaC01g05247 Brassica carinata HOM05D001997 ORTHO05D004620 1.9e-07 62.0 68 51.5
BcaB01g03396 Brassica carinata HOM05D001623 ORTHO05D001473 4.8e-06 57.4 48 58.3


User provided reference genes

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