Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G3364 Fragaria x ananassa HOM05D001081 ORTHO05D007101 4.3e-68 261.2 129 100.0
FAN10G4231 Fragaria x ananassa HOM05D001081 ORTHO05D007101 4.3e-68 261.2 129 100.0
FvH4_7g31560 Fragaria vesca HOM05D001081 ORTHO05D007101 1.6e-67 259.2 129 99.2
FAN06G0656 Fragaria x ananassa HOM05D001081 ORTHO05D007101 1.6e-67 259.2 129 99.2
FAN06G3917 Fragaria x ananassa HOM05D001081 ORTHO05D007101 1.1e-66 256.5 129 98.4
FAN01G2588 Fragaria x ananassa HOM05D001081 ORTHO05D007101 4.1e-66 254.6 129 97.7
RcHm_v2.0_Chr1g0380551 Rosa chinensis HOM05D001081 ORTHO05D007101 1.3e-64 249.6 129 95.3
FAN03G0412 Fragaria x ananassa HOM05D001081 ORTHO05D007101 2.2e-64 248.8 129 96.1
Cpa.g.sc3.88 Carica papaya HOM05D001081 ORTHO05D007101 1.2e-57 226.5 127 87.4
Eucgr.F01156 Eucalyptus grandis HOM05D001081 ORTHO05D007101 2.6e-57 225.3 125 88.0
Haze_00208 Corylus avellana HOM05D001081 ORTHO05D004708 3.4e-57 224.9 127 85.8
Cfa016232 Carpinus fangiana HOM05D001081 ORTHO05D007101 4.5e-57 224.6 127 85.8
CANSAT21G1508 Cannabis sativa HOM05D001081 ORTHO05D007101 1.0e-56 223.4 129 86.8
CiPaw.06G046200 Carya illinoinensis HOM05D001081 ORTHO05D007101 1.0e-56 223.4 127 85.8
QL09p008866 Quercus lobata HOM05D001081 ORTHO05D007101 1.0e-56 223.4 127 85.0
QL09p009112 Quercus lobata HOM05D001081 ORTHO05D007101 1.0e-56 223.4 127 85.0
Sed0024875 Sechium edule HOM05D001081 ORTHO05D007101 1.0e-56 223.4 127 86.6
CsaV3_3G019840 Cucumis sativus L. HOM05D001081 ORTHO05D007101 1.3e-56 223.0 118 91.5
Prupe.2G309800 Prunus persica HOM05D001081 ORTHO05D007101 1.7e-56 222.6 127 85.0
MD07G1288300 Malus domestica HOM05D001081 ORTHO05D007101 2.2e-56 222.2 127 83.5
MELO3C008496.2 Cucumis melo HOM05D001081 ORTHO05D007101 2.9e-56 221.9 118 91.5
Ca_18157_v3 Cicer arietinum L. HOM05D001081 ORTHO05D007101 6.5e-56 220.7 127 83.5
Gohir.D05G099900 Gossypium hirsutum HOM05D001081 ORTHO05D007101 8.5e-56 220.3 127 82.7
Gorai.009G103900 Gossypium raimondii HOM05D001081 ORTHO05D007101 8.5e-56 220.3 127 82.7
Atru.chr12.2201 Acer truncatum HOM05D001081 ORTHO05D007101 1.1e-55 219.9 128 83.6
Aqoxy4G03008 Aquilegia oxysepala HOM05D001081 ORTHO05D007101 1.1e-55 219.9 124 85.5
Sed0012325 Sechium edule HOM05D001081 ORTHO05D007101 1.1e-55 219.9 127 83.5
Aqoxy3G01434 Aquilegia oxysepala HOM05D001081 ORTHO05D007101 1.4e-55 219.5 124 87.1
Duzib068G1165 Durio zibethinus HOM05D001081 ORTHO05D007101 1.9e-55 219.2 127 83.5
PGR083G2221 Punica granatum HOM05D001081 ORTHO05D007101 3.2e-55 218.4 125 85.6
Duzib205G0894 Durio zibethinus HOM05D001081 ORTHO05D007101 5.5e-55 217.6 127 83.5
Gohir.A05G100100 Gossypium hirsutum HOM05D001081 ORTHO05D007101 7.2e-55 217.2 127 81.9
Psat7g080240 Pisum sativum HOM05D001081 ORTHO05D007101 7.2e-55 217.2 127 81.9
Ciclev10022846m.g Citrus clementina HOM05D001081 ORTHO05D007101 1.2e-54 216.5 127 82.7
TAR625G0271 Trochodendron aralioides HOM05D001081 ORTHO05D007101 1.2e-54 216.5 127 84.3
Thecc.03G199300 Theobroma cacao HOM05D001081 ORTHO05D007101 2.7e-54 215.3 127 82.7
Glyma.05G143900 Glycine max HOM05D001081 ORTHO05D007101 3.6e-54 214.9 127 80.3
TWI74G0183 Tripterygium wilfordii HOM05D001081 ORTHO05D007101 3.6e-54 214.9 127 81.1
COL.COLO4_16767 Corchorus olitorius HOM05D001081 ORTHO05D007101 4.7e-54 214.5 127 81.9
Lalb_Chr13g0294051 Lupinus albus HOM05D001081 ORTHO05D007101 6.1e-54 214.2 127 80.3
Nn6g34886 Nelumbo nucifera HOM05D001081 ORTHO05D007101 1.0e-53 213.4 124 82.3
Nn3g16671 Nelumbo nucifera HOM05D001081 ORTHO05D007101 1.4e-53 213.0 124 83.1
Phvul.001G061700 Phaseolus vulgaris HOM05D001081 ORTHO05D007101 1.4e-53 213.0 127 80.3
Glyma.08G100200 Glycine max HOM05D001081 ORTHO05D007101 2.3e-53 212.2 127 78.7
TPR.G9557 Trifolium pratense HOM05D001081 ORTHO05D007101 3.0e-53 211.8 127 81.1
VMungo0251G0734 Vigna mungo HOM05D001081 ORTHO05D007101 3.0e-53 211.8 127 79.5
HanXRQChr14g0429651 Helianthus annuus HOM05D001081 ORTHO05D007101 3.9e-53 211.5 124 80.6
Phvul.003G125501 Phaseolus vulgaris HOM05D001081 ORTHO05D007101 3.9e-53 211.5 127 78.7
ECA238G0006 Erigeron canadensis HOM05D001081 ORTHO05D007101 6.7e-53 210.7 124 81.5
Lj4P697T30 Lonicera japonica HOM05D001081 ORTHO05D007101 6.7e-53 210.7 124 79.8
Lj5g0017992 Lotus japonicus HOM05D001081 ORTHO05D007101 2.0e-52 209.1 127 81.1
Medtr8g079498 Medicago truncatula HOM05D001081 ORTHO05D007101 2.0e-52 209.1 128 79.7
THA.LOC104798899 Tarenaya hassleriana HOM05D001081 ORTHO05D007101 2.0e-52 209.1 127 78.7
Atru.chr9.478 Acer truncatum HOM05D001081 ORTHO05D007101 3.3e-52 208.4 128 78.9
Lj4g0009093 Lotus japonicus HOM05D001081 ORTHO05D007101 3.3e-52 208.4 127 79.5
Nitab4.5_0004146g0010 Nicotiana tabacum HOM05D001081 ORTHO05D007101 5.7e-52 207.6 124 80.6
PGSC0003DMG401028646 Solanum tuberosum HOM05D001081 ORTHO05D007101 5.7e-52 207.6 124 79.0
PGSC0003DMG402028646 Solanum tuberosum HOM05D001081 ORTHO05D007101 5.7e-52 207.6 124 79.0
Ah.05g173160 Amaranthus hybridus HOM05D001081 ORTHO05D007101 7.4e-52 207.2 127 79.5
Cc10_g01340 Coffea canephora HOM05D001081 ORTHO05D007101 7.4e-52 207.2 125 81.6
CAN.G411.51 Capsicum annuum HOM05D001081 ORTHO05D007101 1.3e-51 206.5 124 78.2
CDE05G3015 Ceratophyllum demersum HOM05D001081 ORTHO05D007101 1.3e-51 206.5 125 79.2
THA.LOC104823111 Tarenaya hassleriana HOM05D001081 ORTHO05D007101 1.3e-51 206.5 127 78.0
GSVIVG01009969001 Vitis vinifera HOM05D001081 ORTHO05D007101 1.3e-51 206.5 122 82.0
unitig_32.g11232 Utricularia gibba HOM05D001081 ORTHO05D007101 1.7e-51 206.1 124 78.2
EL10Ac1g00785 Beta vulgaris HOM05D001081 ORTHO05D007101 2.2e-51 205.7 128 80.5
Sc13g0009920 Simmondsia chinensis HOM05D001081 ORTHO05D007101 2.2e-51 205.7 127 81.1
AUR62023429 Chenopodium quinoa HOM05D001081 ORTHO05D007101 2.8e-51 205.3 127 79.5
Manes.18G126800 Manihot esculenta HOM05D001081 ORTHO05D007101 2.8e-51 205.3 125 80.0
Nitab4.5_0004513g0030 Nicotiana tabacum HOM05D001081 ORTHO05D007101 2.8e-51 205.3 124 79.0
PSO541G4732 Papaver somniferum HOM05D001081 ORTHO05D007101 2.8e-51 205.3 127 78.7
PSO675G3624 Papaver somniferum HOM05D001081 ORTHO05D007101 2.8e-51 205.3 127 78.7
DCAR_013886 Daucus carota HOM05D001081 ORTHO05D007101 4.8e-51 204.5 124 76.6
SGA_v2.0_scaffold19G08564 Striga asiatica HOM05D001081 ORTHO05D007101 4.8e-51 204.5 128 78.1
AUR62018052 Chenopodium quinoa HOM05D001081 ORTHO05D007101 6.3e-51 204.1 127 78.7
MBI07_g23667_MAGBIO Magnolia biondii HOM05D001081 ORTHO05D007101 6.3e-51 204.1 123 78.9
Ah.03g146510 Amaranthus hybridus HOM05D001081 ORTHO05D007101 1.1e-50 203.4 127 78.0
Potri.012G015800 Populus trichocarpa HOM05D001081 ORTHO05D007101 1.1e-50 203.4 127 77.2
SalBow6G0310 Salvia bowleyana HOM05D001081 ORTHO05D007101 1.1e-50 203.4 128 78.9
MSTRG.22347 Avicennia marina HOM05D001081 ORTHO05D007101 1.4e-50 203.0 128 78.9
A01p13390 Brassica napus HOM05D001081 ORTHO05D007101 1.4e-50 203.0 127 77.2
BraA01t01281Z Brassica rapa HOM05D001081 ORTHO05D007101 1.4e-50 203.0 127 77.2
Peaxi162Scf00071g00017 Petunia axillaris HOM05D001081 ORTHO05D007101 1.4e-50 203.0 124 79.8
Carub.0007s1934 Capsella rubella HOM05D001081 ORTHO05D007101 1.8e-50 202.6 127 76.4
Thhalv10026223m.g Eutrema salsugineum HOM05D001081 ORTHO05D007101 1.8e-50 202.6 127 77.2
Potri.015G012700 Populus trichocarpa HOM05D001081 ORTHO05D007101 1.8e-50 202.6 127 77.2
SHI02421 Sapria himalayana HOM05D006156 ORTHO05D007101 1.8e-50 202.6 125 76.8
TAR381G1700 Trochodendron aralioides HOM05D001081 ORTHO05D007101 1.8e-50 202.6 124 79.8
AL7G31700 Arabidopsis lyrata HOM05D001081 ORTHO05D007101 2.4e-50 202.2 127 77.2
Lsat_1_v5_gn_2_7800 Lactuca sativa HOM05D000015 ORTHO05D002445 3.1e-50 201.8 125 79.2
Hund21005 Selenicereus undatus HOM05D001081 ORTHO05D007101 3.1e-50 201.8 127 77.2
BcaC09g51172 Brassica carinata HOM05D001081 ORTHO05D007101 4.1e-50 201.4 127 77.2
BcaNung05107 Brassica carinata HOM05D001081 ORTHO05D007101 4.1e-50 201.4 127 77.2
BolC1t01570H Brassica oleracea HOM05D001081 ORTHO05D007101 4.1e-50 201.4 127 77.2
C01p16100 Brassica napus HOM05D001081 ORTHO05D007101 7.0e-50 200.7 127 77.2
AT4G22000 Arabidopsis thaliana HOM05D001081 ORTHO05D007101 9.1e-50 200.3 127 76.4
Sp7g20190 Schrenkiella parvula HOM05D001081 ORTHO05D007101 9.1e-50 200.3 127 76.4
SGA_v2.0_scaffold25G11207 Striga asiatica HOM05D001081 ORTHO05D007101 1.2e-49 199.9 128 76.6
vmacro12512 Vaccinium macrocarpon HOM05D001081 ORTHO05D007101 1.6e-49 199.5 124 75.0
Migut.N03179 Erythranthe guttata HOM05D001081 ORTHO05D007101 7.7e-49 197.2 128 76.6
Aa31LG6G3950 Aethionema arabicum HOM05D001081 ORTHO05D007101 1.7e-48 196.1 127 74.0
Sopen12g021900 Solanum pennellii HOM05D001081 ORTHO05D007101 2.2e-48 195.7 120 75.8
Sopen12g021840 Solanum pennellii HOM05D001081 ORTHO05D007101 2.9e-48 195.3 120 75.0
CARHR228810 Cardamine hirsuta HOM05D001081 ORTHO05D007101 3.8e-48 194.9 128 75.0
vmacro07565 Vaccinium macrocarpon HOM05D001081 ORTHO05D007101 1.9e-47 192.6 124 71.8
Solyc12g042700.3 Solanum lycopersicum HOM05D001081 ORTHO05D007101 7.2e-47 190.7 120 74.2
Os05g0114600 Oryza sativa ssp. japonica HOM05D001081 ORTHO05D007101 1.2e-46 189.9 127 74.0
Zm00001eb355650 Zea mays HOM05D001081 ORTHO05D007101 5.2e-45 184.5 127 74.0
MSTRG.25269 Avicennia marina HOM05D001081 ORTHO05D007101 5.7e-44 181.0 171 57.9
CDE11G0170 Ceratophyllum demersum HOM05D001081 ORTHO05D007101 6.3e-43 177.6 125 73.6
HPP92_008968 Vanilla planifolia HOM05D001081 ORTHO05D007101 1.4e-42 176.4 109 74.3
AUR62013725 Chenopodium quinoa HOM05D001081 ORTHO05D007101 4.1e-42 174.9 106 81.1
ATR1134G096 Amborella trichopoda HOM05D001081 ORTHO05D007101 8.5e-40 167.2 112 73.2
SEGI_15379 Sequoiadendron giganteum HOM05D001081 ORTHO05D007101 3.2e-39 165.2 128 68.8
ClCG05G008950 Citrullus lanatus HOM05D001081 ORTHO05D007101 1.2e-38 163.3 87 94.3
BcaB03g11721 Brassica carinata HOM05D001081 ORTHO05D007101 3.1e-34 148.7 103 73.8
Actinidia17007 Actinidia chinensis HOM05D001081 ORTHO05D007101 5.0e-32 141.4 82 76.8
CSS0017659 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 5.5e-31 137.9 82 79.3
Dinv31879 Davidia involucrata HOM05D001081 ORTHO05D007101 2.4e-26 122.5 74 82.4
Solyc12g042720.3 Solanum lycopersicum HOM05D001081 ORTHO05D007101 1.2e-25 120.2 76 75.0
Gorai.006G039100 Gossypium raimondii HOM05D001081 ORTHO05D007101 4.5e-25 118.2 127 53.5
Mapoly0012s0096 Marchantia polymorpha HOM05D001081 ORTHO05D007101 5.0e-24 114.8 98 59.2
Gohir.A09G033580 Gossypium hirsutum HOM05D001081 ORTHO05D007101 1.6e-22 109.8 67 79.1
Pp3c15_6340 Physcomitrium patens HOM05D001081 ORTHO05D007101 4.7e-22 108.2 89 61.8
SMO356G0374 Selaginella moellendorffii HOM05D001081 ORTHO05D007101 4.7e-22 108.2 86 59.3
Gohir.D09G034100 Gossypium hirsutum HOM05D001081 ORTHO05D007101 4.0e-21 105.1 67 77.6
CSS0023065 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 8.9e-21 104.0 60 83.3
CSS0034162 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 2.9e-19 99.0 56 85.7
arahy.Tifrunner.gnm1.ann1.EUX55C Arachis hypogaea HOM05D001081 ORTHO05D007101 5.9e-17 91.3 51 90.2
Nitab4.5_0001077g0030 Nicotiana tabacum HOM05D012963 ORTHO05D007101 5.9e-17 91.3 82 52.4
CBR_g8977 Chara braunii HOM05D001081 ORTHO05D007101 4.3e-15 85.1 81 51.9
Zm00001eb266390 Zea mays HOM05D001081 ORTHO05D007101 1.4e-13 80.1 114 47.4
Nitab4.5_0002544g0090 Nicotiana tabacum HOM05D001081 ORTHO05D007101 1.7e-08 63.2 40 70.0
Actinidia15449 Actinidia chinensis HOM05D001081 ORTHO05D007101 2.3e-08 62.8 36 77.8
DCAR_016735 Daucus carota HOM05D001081 ORTHO05D007101 3.9e-08 62.0 45 55.6


User provided reference genes

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