Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G3339 Fragaria x ananassa HOM05D001175 ORTHO05D003020 1.9e-120 436.0 251 100.0
Cpa.g.sc107.10 Carica papaya HOM05D001175 ORTHO05D003020 1.9e-59 233.4 171 78.4
FvH4_7g29060 Fragaria vesca HOM05D001175 ORTHO05D003020 7.9e-58 228.0 128 99.2
FAN06G4630 Fragaria x ananassa HOM05D001175 ORTHO05D003020 7.9e-58 228.0 128 99.2
FAN06G4862 Fragaria x ananassa HOM05D001175 ORTHO05D003020 7.9e-58 228.0 128 99.2
RcHm_v2.0_Chr1g0376781 Rosa chinensis HOM05D001175 ORTHO05D003020 7.9e-58 228.0 128 99.2
FAN03G1081 Fragaria x ananassa HOM05D001175 ORTHO05D003020 3.0e-57 226.1 128 98.4
EL10Ac3g05698 Beta vulgaris HOM05D001175 ORTHO05D003020 6.7e-57 224.9 169 75.7
FAN01G2900 Fragaria x ananassa HOM05D001175 ORTHO05D003020 6.7e-57 224.9 128 97.7
FAN03G2528 Fragaria x ananassa HOM05D001175 ORTHO05D003020 1.1e-56 224.2 128 97.7
Prupe.2G290500 Prunus persica HOM05D001175 ORTHO05D003020 2.2e-55 219.9 128 96.1
Atru.chr1.514 Acer truncatum HOM05D001175 ORTHO05D003020 6.3e-55 218.4 130 90.8
Haze_13752 Corylus avellana HOM05D001175 ORTHO05D003020 5.3e-54 215.3 128 92.2
QL09p014926 Quercus lobata HOM05D001175 ORTHO05D003020 5.3e-54 215.3 128 92.2
Hund11771 Selenicereus undatus HOM05D001175 ORTHO05D003020 5.3e-54 215.3 146 81.5
MD01G1197300 Malus domestica HOM05D001175 ORTHO05D003020 6.9e-54 214.9 128 93.8
Cfa008283 Carpinus fangiana HOM05D001175 ORTHO05D003020 1.5e-53 213.8 128 91.4
CANSAT21G1123 Cannabis sativa HOM05D001175 ORTHO05D003020 2.0e-53 213.4 128 92.2
CANSAT21G1763 Cannabis sativa HOM05D001175 ORTHO05D003020 2.0e-53 213.4 128 92.2
Potri.012G136100 Populus trichocarpa HOM05D001175 ORTHO05D003020 7.7e-53 211.5 128 90.6
TAR374G0953 Trochodendron aralioides HOM05D001175 ORTHO05D003020 7.7e-53 211.5 153 79.1
CiPaw.03G102800 Carya illinoinensis HOM05D001175 ORTHO05D003020 2.9e-52 209.5 128 89.8
TAR375G0307 Trochodendron aralioides HOM05D001175 ORTHO05D003020 5.0e-52 208.8 146 83.6
Sabra12G0102300 Salix brachista HOM05D001175 ORTHO05D003020 6.5e-52 208.4 128 89.1
MD07G1264600 Malus domestica HOM05D001175 ORTHO05D003020 8.5e-52 208.0 128 91.4
Ciclev10004290m.g Citrus clementina HOM05D001175 ORTHO05D003020 1.1e-51 207.6 128 88.3
Duzib205G0391 Durio zibethinus HOM05D001175 ORTHO05D003020 1.9e-51 206.8 128 88.3
ClCG01G005640 Citrullus lanatus HOM05D001175 ORTHO05D003020 3.2e-51 206.1 222 57.7
arahy.Tifrunner.gnm1.ann1.3THH2M Arachis hypogaea HOM05D001175 ORTHO05D003020 5.5e-51 205.3 128 85.9
Sabra15G0149600 Salix brachista HOM05D001175 ORTHO05D003020 5.5e-51 205.3 128 88.3
COL.COLO4_14267 Corchorus olitorius HOM05D001175 ORTHO05D003020 7.2e-51 204.9 128 88.3
Manes.06G144100 Manihot esculenta HOM05D001175 ORTHO05D003020 1.2e-50 204.1 128 87.5
Potri.015G138500 Populus trichocarpa HOM05D001175 ORTHO05D003020 3.6e-50 202.6 128 87.5
Duzib084G1294 Durio zibethinus HOM05D001175 ORTHO05D003020 4.7e-50 202.2 128 86.7
Gorai.008G280000 Gossypium raimondii HOM05D001175 ORTHO05D003020 1.4e-49 200.7 128 86.7
Eucgr.K00227 Eucalyptus grandis HOM05D001175 ORTHO05D003020 1.8e-49 200.3 128 84.4
Manes.14G028800 Manihot esculenta HOM05D001175 ORTHO05D003020 5.1e-49 198.7 128 85.2
AUR62021232 Chenopodium quinoa HOM05D001175 ORTHO05D003020 6.7e-49 198.4 128 83.6
Glyma.16G198200 Glycine max HOM05D001175 ORTHO05D003020 8.8e-49 198.0 130 83.1
LjContig00238g0002815 Lotus japonicus HOM05D001175 ORTHO05D003020 2.0e-48 196.8 128 85.9
Phvul.004G121400 Phaseolus vulgaris HOM05D001175 ORTHO05D003020 2.0e-48 196.8 130 82.3
PGR142G0206 Punica granatum HOM05D001175 ORTHO05D003020 2.0e-48 196.8 128 82.8
Gohir.A12G260400 Gossypium hirsutum HOM05D001175 ORTHO05D003020 3.3e-48 196.1 128 85.2
AUR62016027 Chenopodium quinoa HOM05D001175 ORTHO05D003020 4.4e-48 195.7 128 82.8
TWI23G0325 Tripterygium wilfordii HOM05D001175 ORTHO05D003020 4.4e-48 195.7 128 84.4
Glyma.09G146200 Glycine max HOM05D001175 ORTHO05D003020 5.7e-48 195.3 128 82.0
Phvul.004G121300 Phaseolus vulgaris HOM05D001175 ORTHO05D003020 5.7e-48 195.3 130 81.5
Glyma.16G198300 Glycine max HOM05D001175 ORTHO05D003020 9.7e-48 194.5 128 82.8
Nitab4.5_0001559g0070 Nicotiana tabacum HOM05D001175 ORTHO05D003020 2.2e-47 193.4 130 80.8
MELO3C006880.2 Cucumis melo HOM05D001175 ORTHO05D003020 6.3e-47 191.8 128 82.0
ClCG05G007850 Citrullus lanatus HOM05D001175 ORTHO05D003020 1.1e-46 191.0 128 81.2
Sed0020201 Sechium edule HOM05D001175 ORTHO05D003020 1.1e-46 191.0 128 81.2
CsaV3_3G016850 Cucumis sativus L. HOM05D001175 ORTHO05D003020 1.4e-46 190.7 128 81.2
Nitab4.5_0001083g0090 Nicotiana tabacum HOM05D001175 ORTHO05D003020 3.1e-46 189.5 128 81.2
Lj2g0010509 Lotus japonicus HOM05D001175 ORTHO05D003020 4.1e-46 189.1 129 79.8
Ah.13g068280 Amaranthus hybridus HOM05D001175 ORTHO05D003020 2.0e-45 186.8 128 78.9
TPR.G25068 Trifolium pratense HOM05D001175 ORTHO05D003020 2.0e-45 186.8 126 81.0
Solyc03g026190.3 Solanum lycopersicum HOM05D001175 ORTHO05D003020 2.6e-45 186.4 128 79.7
Sopen03g005060 Solanum pennellii HOM05D001175 ORTHO05D003020 2.6e-45 186.4 128 79.7
EL10Ac6g13980 Beta vulgaris HOM05D001175 ORTHO05D003020 4.5e-45 185.7 128 80.5
CAN.G548.1 Capsicum annuum HOM05D001175 ORTHO05D003020 4.5e-45 185.7 128 78.9
Ca_07216_v3 Cicer arietinum L. HOM05D001175 ORTHO05D003020 4.5e-45 185.7 126 81.0
Psat1g107280 Pisum sativum HOM05D001175 ORTHO05D003020 7.7e-45 184.9 126 80.2
VMungo0464G0169 Vigna mungo HOM05D001175 ORTHO05D003020 1.7e-44 183.7 150 70.7
Gorai.004G121400 Gossypium raimondii HOM05D001175 ORTHO05D003020 2.2e-44 183.3 128 79.7
Sed0008095 Sechium edule HOM05D001175 ORTHO05D003020 2.9e-44 183.0 128 76.6
MELO3C005370.2 Cucumis melo HOM05D001175 ORTHO05D003020 6.5e-44 181.8 128 78.9
vmacro09857 Vaccinium macrocarpon HOM05D001175 ORTHO05D003020 8.5e-44 181.4 127 81.1
Gohir.D09G041000 Gossypium hirsutum HOM05D001175 ORTHO05D003020 3.2e-43 179.5 128 80.5
Peaxi162Scf00915g00255 Petunia axillaris HOM05D001175 ORTHO05D003020 3.2e-43 179.5 130 79.2
arahy.Tifrunner.gnm1.ann1.BZ5K6I Arachis hypogaea HOM05D001175 ORTHO05D003020 1.2e-42 177.6 128 75.8
arahy.Tifrunner.gnm1.ann1.WI3IXZ Arachis hypogaea HOM05D001175 ORTHO05D003020 1.2e-42 177.6 128 75.8
Duzib068G0321 Durio zibethinus HOM05D001175 ORTHO05D003020 2.1e-42 176.8 128 76.6
Gorai.007G010500 Gossypium raimondii HOM05D001175 ORTHO05D003020 2.1e-42 176.8 128 78.9
Hma1.2p1_0270F.1_g108410 Hydrangea macrophylla HOM05D001175 ORTHO05D003020 2.1e-42 176.8 128 75.8
CsaV3_5G005860 Cucumis sativus L. HOM05D001175 ORTHO05D003020 4.7e-42 175.6 128 78.1
DCAR_020234 Daucus carota HOM05D001175 ORTHO05D003020 6.1e-42 175.3 128 75.8
Migut.F00373 Erythranthe guttata HOM05D001175 ORTHO05D003020 6.1e-42 175.3 129 75.2
Gohir.A09G040200 Gossypium hirsutum HOM05D001175 ORTHO05D003020 6.1e-42 175.3 128 78.9
Gohir.A08G082600 Gossypium hirsutum HOM05D001175 ORTHO05D003020 2.3e-41 173.3 127 78.0
Lalb_Chr19g0131041 Lupinus albus HOM05D001175 ORTHO05D003020 3.0e-41 172.9 128 76.6
Actinidia34083 Actinidia chinensis HOM05D001175 ORTHO05D003020 4.0e-41 172.6 128 76.6
SalBow2G1271 Salvia bowleyana HOM05D001175 ORTHO05D003020 5.2e-41 172.2 128 75.0
Ah.07g209000 Amaranthus hybridus HOM05D001175 ORTHO05D003020 6.7e-41 171.8 124 76.6
SalBow4G1481 Salvia bowleyana HOM05D001175 ORTHO05D003020 2.0e-40 170.2 128 72.7
Actinidia31806 Actinidia chinensis HOM05D001175 ORTHO05D003020 2.6e-40 169.9 128 75.0
MSTRG.107 Avicennia marina HOM05D001175 ORTHO05D003020 4.4e-40 169.1 119 78.2
Dinv28476 Davidia involucrata HOM05D001175 ORTHO05D003020 4.4e-40 169.1 127 78.0
MSTRG.8761 Avicennia marina HOM05D001175 ORTHO05D003020 5.7e-40 168.7 128 71.9
Lalb_Chr19g0131051 Lupinus albus HOM05D001175 ORTHO05D003020 9.7e-40 167.9 128 74.2
Actinidia32892 Actinidia chinensis HOM05D001175 ORTHO05D003020 1.3e-39 167.5 128 75.8
Lalb_Chr19g0131031 Lupinus albus HOM05D001175 ORTHO05D003020 6.3e-39 165.2 150 64.7
SGA_v2.0_scaffold221G42723 Striga asiatica HOM05D001175 ORTHO05D003020 6.3e-39 165.2 129 72.1
PSO782G4201 Papaver somniferum HOM05D001175 ORTHO05D003020 8.2e-39 164.9 148 68.9
Hma1.2p1_0099F.1_g048540 Hydrangea macrophylla HOM05D001175 ORTHO05D003020 1.1e-38 164.5 128 75.8
Lj8A28G36 Lonicera japonica HOM05D001175 ORTHO05D003020 2.4e-38 163.3 116 80.2
Nitab4.5_0004560g0050 Nicotiana tabacum HOM05D001175 ORTHO05D003020 9.1e-38 161.4 141 67.4
PGSC0003DMG400014269 Solanum tuberosum HOM05D001175 ORTHO05D003020 1.6e-37 160.6 128 71.9
Cc02_g03380 Coffea canephora HOM05D001175 ORTHO05D003020 5.9e-37 158.7 150 70.0
Thhalv10003661m.g Eutrema salsugineum HOM05D001175 ORTHO05D003020 7.7e-37 158.3 126 71.4
Sed0002353 Sechium edule HOM05D001175 ORTHO05D003020 1.0e-36 157.9 128 70.3
Oeu062774.3 Olea europaea HOM05D001175 ORTHO05D003020 2.2e-36 156.8 128 74.2
Rhsim01G0180400 Rhododendron simsii HOM05D001175 ORTHO05D003020 2.2e-36 156.8 132 70.5
Sc19g0001690 Simmondsia chinensis HOM05D001175 ORTHO05D003020 2.9e-36 156.4 128 71.1
ATR0757G064 Amborella trichopoda HOM05D001175 ORTHO05D003020 6.5e-36 155.2 145 68.3
Nitab4.5_0003517g0030 Nicotiana tabacum HOM05D001175 ORTHO05D003020 6.5e-36 155.2 128 71.1
THA.LOC104818274 Tarenaya hassleriana HOM05D001175 ORTHO05D003020 6.5e-36 155.2 128 75.0
AL8G38870 Arabidopsis lyrata HOM05D001175 ORTHO05D003020 1.9e-35 153.7 120 74.2
Oeu030123.1 Olea europaea HOM05D001175 ORTHO05D003020 1.9e-35 153.7 128 68.8
AT5G62090 Arabidopsis thaliana HOM05D001175 ORTHO05D003020 2.5e-35 153.3 122 73.8
vmacro06718 Vaccinium macrocarpon HOM05D001175 ORTHO05D003020 2.5e-35 153.3 141 66.0
MSTRG.8440 Avicennia marina HOM05D001175 ORTHO05D003020 1.6e-34 150.6 118 75.4
SGA_v2.0_scaffold221G42725 Striga asiatica HOM05D001175 ORTHO05D003020 8.0e-34 148.3 127 69.3
unitig_61.g26293 Utricularia gibba HOM05D001175 ORTHO05D003020 4.0e-33 146.0 128 68.0
Carub.0008s2277 Capsella rubella HOM05D001175 ORTHO05D003020 2.6e-32 143.3 117 70.9
VMungo0464G1572 Vigna mungo HOM05D001175 ORTHO05D003020 1.3e-31 141.0 131 66.4
Oeu021765.1 Olea europaea HOM05D001175 ORTHO05D003020 4.1e-30 136.0 128 64.1
EL10Ac1g02183 Beta vulgaris HOM05D001175 ORTHO05D023823 2.0e-29 133.7 146 59.6
DCAR_018172 Daucus carota HOM05D001175 ORTHO05D003020 3.5e-29 132.9 127 61.4
Aa31LG3G19140 Aethionema arabicum HOM05D001175 ORTHO05D003020 5.9e-29 132.1 119 70.6
Dinv35181 Davidia involucrata HOM05D001175 ORTHO05D003020 7.7e-29 131.7 104 75.0
Rhsim09G0196500 Rhododendron simsii HOM05D001175 ORTHO05D003020 1.3e-28 131.0 145 57.2
Gorai.006G046800 Gossypium raimondii HOM05D001175 ORTHO05D003020 2.2e-28 130.2 94 78.7
Lsat_1_v5_gn_8_7441 Lactuca sativa HOM05D001175 ORTHO05D003020 5.0e-28 129.0 132 62.9
HanXRQChr13g0417891 Helianthus annuus HOM05D001175 ORTHO05D003020 8.5e-28 128.3 129 62.0
Migut.F01143 Erythranthe guttata HOM05D001175 ORTHO05D003020 1.1e-27 127.9 118 63.6
Dinv37690 Davidia involucrata HOM05D001175 ORTHO05D003020 4.2e-27 125.9 148 57.4
TAR636G2633 Trochodendron aralioides HOM05D001175 ORTHO05D003020 4.2e-27 125.9 130 62.3
Sp2g25260 Schrenkiella parvula HOM05D001175 ORTHO05D003020 6.1e-26 122.1 102 70.6
DCAR_008874 Daucus carota HOM05D001175 ORTHO05D003020 8.0e-26 121.7 111 69.4
HanXRQChr13g0393171 Helianthus annuus HOM05D001175 ORTHO05D003020 3.0e-25 119.8 123 64.2
Actinidia03105 Actinidia chinensis HOM05D001175 ORTHO05D003020 2.0e-24 117.1 134 62.7
Lsat_1_v5_gn_9_54401 Lactuca sativa HOM05D001175 ORTHO05D003020 5.7e-24 115.5 129 58.1
MBI04_g02074_MAGBIO Magnolia biondii HOM05D001175 ORTHO05D003020 5.7e-24 115.5 97 75.3
Aqoxy7G00439 Aquilegia oxysepala HOM05D001175 ORTHO05D003020 2.8e-23 113.2 68 89.7
Actinidia27407 Actinidia chinensis HOM05D001175 ORTHO05D003020 4.9e-23 112.5 141 53.2
HanXRQChr05g0141281 Helianthus annuus HOM05D001175 ORTHO05D003020 1.4e-22 110.9 128 58.6
Nn1g01368 Nelumbo nucifera HOM05D001175 ORTHO05D003020 1.8e-22 110.5 68 85.3
CSS0031578 Camellia sinensis var. sinensis HOM05D001175 ORTHO05D003020 3.1e-22 109.8 128 56.2
Actinidia05227 Actinidia chinensis HOM05D001175 ORTHO05D003020 4.1e-22 109.4 141 52.5
Nn6g34243 Nelumbo nucifera HOM05D001175 ORTHO05D003020 7.0e-22 108.6 68 83.8
SGA_v2.0_scaffold10G05381 Striga asiatica HOM05D001175 ORTHO05D003020 7.0e-22 108.6 119 60.5
Lsat_1_v5_gn_2_133101 Lactuca sativa HOM05D001175 ORTHO05D003020 9.2e-22 108.2 121 58.7
TWI39G0406 Tripterygium wilfordii HOM05D001175 ORTHO05D003020 1.2e-21 107.8 64 89.1
CiPaw.04G067200 Carya illinoinensis HOM05D001175 ORTHO05D003020 5.9e-21 105.5 68 83.8
unitig_747.g21762 Utricularia gibba HOM05D001175 ORTHO05D003020 1.7e-20 104.0 118 54.2
HanXRQChr14g0462081 Helianthus annuus HOM05D001175 ORTHO05D003020 3.8e-20 102.8 129 51.2
CARHR275880 Cardamine hirsuta HOM05D001175 ORTHO05D003020 6.6e-20 102.1 76 78.9
Lj1A993T68 Lonicera japonica HOM05D001175 ORTHO05D003020 8.6e-20 101.7 129 53.5
Gohir.D08G113000 Gossypium hirsutum HOM05D001175 ORTHO05D003020 1.2e-18 97.8 69 76.8
DCAR_003229 Daucus carota HOM05D001175 ORTHO05D003020 1.6e-18 97.4 93 61.3
HPP92_003271 Vanilla planifolia HOM05D001175 ORTHO05D003020 2.1e-18 97.1 86 74.4
PSO478G1523 Papaver somniferum HOM05D001175 ORTHO05D003020 4.7e-18 95.9 63 81.0
CDE02G2192 Ceratophyllum demersum HOM05D001175 ORTHO05D003020 6.1e-18 95.5 136 50.0
CDE02G1305 Ceratophyllum demersum HOM05D001175 ORTHO05D003020 4.0e-17 92.8 135 47.4
TAR629G1730 Trochodendron aralioides HOM05D001175 ORTHO05D003020 8.9e-17 91.7 68 76.5
Haze_20476 Corylus avellana HOM05D001175 ORTHO05D003020 2.0e-16 90.5 144 45.1
CDE11G0996 Ceratophyllum demersum HOM05D001175 ORTHO05D003020 3.4e-16 89.7 128 51.6
Haze_08944 Corylus avellana HOM05D001175 ORTHO05D003020 1.3e-15 87.8 143 44.1
ECA238G4782 Erigeron canadensis HOM05D001175 ORTHO05D003020 2.9e-15 86.7 121 52.9
QL02p091955 Quercus lobata HOM05D001175 ORTHO05D003020 3.7e-15 86.3 145 44.8
CDE06G0923 Ceratophyllum demersum HOM05D001175 ORTHO05D003020 4.1e-14 82.8 135 45.2
Rhsim07G0094500 Rhododendron simsii HOM05D001175 ORTHO05D003020 5.4e-14 82.4 139 44.6
EL10As3g23326 Beta vulgaris HOM05D001175 ORTHO05D027015 1.6e-13 80.9 115 49.6
BolC2t12242H Brassica oleracea HOM05D001175 ORTHO05D003020 2.0e-13 80.5 102 54.9
BcaC03g18119 Brassica carinata HOM05D001175 ORTHO05D003020 5.9e-13 79.0 102 53.9
Zm00001eb269310 Zea mays HOM05D001175 ORTHO05D003020 5.9e-13 79.0 85 61.2
A02p41940 Brassica napus HOM05D001175 ORTHO05D003020 2.3e-12 77.0 103 52.4
C02p61850 Brassica napus HOM05D001175 ORTHO05D003020 8.6e-12 75.1 97 53.6
BraA02t09129Z Brassica rapa HOM05D001175 ORTHO05D003020 8.6e-12 75.1 97 53.6
Cfa012107 Carpinus fangiana HOM05D001175 ORTHO05D003020 1.1e-11 74.7 137 43.8
Zm00001eb378690 Zea mays HOM05D001175 ORTHO05D003020 1.9e-11 73.9 66 63.6
BcaB07g29802 Brassica carinata HOM05D001175 ORTHO05D003020 1.2e-10 71.2 68 64.7
vmacro13920 Vaccinium macrocarpon HOM05D001175 ORTHO05D003020 1.6e-10 70.9 112 45.5
CSS0007687 Camellia sinensis var. sinensis HOM05D001175 ORTHO05D003020 1.0e-09 68.2 137 43.1
CiPaw.11G140900 Carya illinoinensis HOM05D001175 ORTHO05D003020 1.0e-09 68.2 150 40.7
GSVIVG01019855001 Vitis vinifera HOM05D001175 ORTHO05D003020 4.0e-09 66.2 68 58.8
ECA233G1946 Erigeron canadensis HOM05D001175 ORTHO05D003020 1.2e-08 64.7 120 40.8
MD07G1264700 Malus domestica HOM05D001175 ORTHO05D027015 5.8e-08 62.4 43 79.1


User provided reference genes

Program Settings