Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G3329 Fragaria x ananassa HOM05D002770 ORTHO05D003011 1.3e-45 186.0 92 100.0
FvH4_7g08780 Fragaria vesca HOM05D002770 ORTHO05D003011 1.7e-45 185.7 91 100.0
FAN03G2444 Fragaria x ananassa HOM05D002770 ORTHO05D003011 1.7e-45 185.7 91 100.0
FAN01G2864 Fragaria x ananassa HOM05D002770 ORTHO05D003011 3.1e-44 181.4 91 97.8
FAN06G1321 Fragaria x ananassa HOM05D002770 ORTHO05D003011 3.1e-44 181.4 90 100.0
Prupe.2G115700 Prunus persica HOM05D002770 ORTHO05D003011 1.7e-42 175.6 91 91.2
RcHm_v2.0_Chr1g0344071 Rosa chinensis HOM05D002770 ORTHO05D003011 2.9e-42 174.9 91 92.3
MD02G1224900 Malus domestica HOM05D002770 ORTHO05D003011 1.9e-41 172.2 91 90.1
Cfa011023 Carpinus fangiana HOM05D002770 ORTHO05D003011 2.8e-37 158.3 91 80.2
Haze_02902 Corylus avellana HOM05D002770 ORTHO05D003011 2.8e-37 158.3 91 80.2
GSVIVG01018374001 Vitis vinifera HOM05D002770 ORTHO05D003011 2.8e-37 158.3 91 79.1
PSO782G1010 Papaver somniferum HOM05D002770 ORTHO05D003011 1.8e-36 155.6 91 80.2
TAR374G1576 Trochodendron aralioides HOM05D002770 ORTHO05D003011 1.8e-36 155.6 91 80.2
QL04p026158 Quercus lobata HOM05D002770 ORTHO05D003011 5.3e-36 154.1 91 76.9
ClCG05G002890 Citrullus lanatus HOM05D002770 ORTHO05D003011 7.0e-36 153.7 91 79.1
Duzib138G1245 Durio zibethinus HOM05D002770 ORTHO05D003011 7.0e-36 153.7 91 81.3
PGR004G2859 Punica granatum HOM05D002770 ORTHO05D003011 7.0e-36 153.7 91 78.0
Cpa.g.sc52.70 Carica papaya HOM05D002770 ORTHO05D003011 9.1e-36 153.3 91 79.1
Gohir.A12G099200 Gossypium hirsutum HOM05D002770 ORTHO05D003011 9.1e-36 153.3 91 80.2
Gohir.D12G102200 Gossypium hirsutum HOM05D002770 ORTHO05D003011 9.1e-36 153.3 91 80.2
Thecc.01G402500 Theobroma cacao HOM05D002770 ORTHO05D003011 1.2e-35 152.9 91 81.3
Dinv44022 Davidia involucrata HOM05D002770 ORTHO05D003011 1.6e-35 152.5 91 75.8
Gorai.008G111400 Gossypium raimondii HOM05D002770 ORTHO05D003011 3.5e-35 151.4 91 79.1
Sed0027284 Sechium edule HOM05D002770 ORTHO05D003011 2.2e-34 148.7 91 75.8
COL.COLO4_12352 Corchorus olitorius HOM05D002770 ORTHO05D003011 3.8e-34 147.9 91 78.0
Atru.chr5.73 Acer truncatum HOM05D002770 ORTHO05D003011 6.5e-34 147.1 89 79.8
MELO3C006267.2 Cucumis melo HOM05D002770 ORTHO05D003011 8.5e-34 146.7 87 80.5
CSS0009152 Camellia sinensis var. sinensis HOM05D002770 ORTHO05D003011 1.1e-33 146.4 92 76.1
CsaV3_3G010430 Cucumis sativus L. HOM05D002770 ORTHO05D003011 1.1e-33 146.4 92 76.1
Atru.chr5.43 Acer truncatum HOM05D002770 ORTHO05D003011 2.5e-33 145.2 89 78.7
CSS0011590 Camellia sinensis var. sinensis HOM05D002770 ORTHO05D003011 3.2e-33 144.8 92 76.1
CSS0043922 Camellia sinensis var. sinensis HOM05D002770 ORTHO05D003011 4.2e-33 144.4 92 75.0
PGSC0003DMG401001686 Solanum tuberosum HOM05D002770 ORTHO05D003011 5.5e-33 144.1 91 71.4
CANSAT25G0893 Cannabis sativa HOM05D002770 ORTHO05D003011 9.4e-33 143.3 91 71.4
Nitab4.5_0004088g0050 Nicotiana tabacum HOM05D002770 ORTHO05D003011 1.2e-32 142.9 91 70.3
Ciclev10019957m.g Citrus clementina HOM05D002770 ORTHO05D003011 1.6e-32 142.5 97 74.2
AL4G43670 Arabidopsis lyrata HOM05D002770 ORTHO05D003011 2.1e-32 142.1 91 74.7
CiPaw.14G016800 Carya illinoinensis HOM05D002770 ORTHO05D003011 2.1e-32 142.1 91 73.6
Manes.05G058500 Manihot esculenta HOM05D002770 ORTHO05D003011 2.1e-32 142.1 90 77.8
Nitab4.5_0005064g0050 Nicotiana tabacum HOM05D002770 ORTHO05D003011 2.7e-32 141.7 91 69.2
Sc02g0003270 Simmondsia chinensis HOM05D002770 ORTHO05D003011 3.6e-32 141.4 92 71.7
Gohir.A08G056150 Gossypium hirsutum HOM05D002770 ORTHO05D003011 4.7e-32 141.0 91 73.6
Solyc01g088600.4 Solanum lycopersicum HOM05D002770 ORTHO05D003011 4.7e-32 141.0 91 69.2
Sopen01g035450 Solanum pennellii HOM05D002770 ORTHO05D003011 4.7e-32 141.0 91 69.2
AT2G44640 Arabidopsis thaliana HOM05D002770 ORTHO05D003011 6.1e-32 140.6 91 74.7
MSTRG.4960 Avicennia marina HOM05D002770 ORTHO05D003011 8.0e-32 140.2 92 70.7
CAN.G756.17 Capsicum annuum HOM05D002770 ORTHO05D003011 8.0e-32 140.2 91 70.3
Peaxi162Scf00745g00016 Petunia axillaris HOM05D002770 ORTHO05D003011 8.0e-32 140.2 92 70.7
Carub.0004s2719 Capsella rubella HOM05D002770 ORTHO05D003011 1.4e-31 139.4 91 72.5
Migut.N01715 Erythranthe guttata HOM05D002770 ORTHO05D003011 1.4e-31 139.4 92 68.5
Sp4g26720 Schrenkiella parvula HOM05D002770 ORTHO05D003011 1.4e-31 139.4 91 72.5
BcaC01g05204 Brassica carinata HOM05D002770 ORTHO05D003011 2.3e-31 138.7 91 71.4
A03p24840 Brassica napus HOM05D002770 ORTHO05D003011 2.3e-31 138.7 91 71.4
BraA03t11691Z Brassica rapa HOM05D002770 ORTHO05D003011 2.3e-31 138.7 91 71.4
BcaC02g12288 Brassica carinata HOM05D002770 ORTHO05D003011 4.0e-31 137.9 91 70.3
C04p05590 Brassica napus HOM05D002770 ORTHO05D003011 4.0e-31 137.9 91 70.3
BraA05t19454Z Brassica rapa HOM05D002770 ORTHO05D003011 4.0e-31 137.9 91 70.3
MD07G1090600 Malus domestica HOM05D002770 ORTHO05D003011 5.2e-31 137.5 81 81.5
BolC4t22189H Brassica oleracea HOM05D002770 ORTHO05D003011 6.7e-31 137.1 91 70.3
THA.LOC104817177 Tarenaya hassleriana HOM05D002770 ORTHO05D003011 6.7e-31 137.1 91 70.3
A05p04780 Brassica napus HOM05D002770 ORTHO05D003011 8.8e-31 136.7 91 69.2
BolC3t15311H Brassica oleracea HOM05D002770 ORTHO05D003011 8.8e-31 136.7 91 70.3
TWI14G0561 Tripterygium wilfordii HOM05D002770 ORTHO05D003011 8.8e-31 136.7 92 71.7
Thhalv10001437m.g Eutrema salsugineum HOM05D002770 ORTHO05D003011 1.2e-30 136.3 91 71.4
CDE04G2107 Ceratophyllum demersum HOM05D002770 ORTHO05D003011 2.0e-30 135.6 91 68.1
AUR62013789 Chenopodium quinoa HOM05D002770 ORTHO05D003011 2.0e-30 135.6 92 69.6
C03p29620 Brassica napus HOM05D002770 ORTHO05D003011 2.6e-30 135.2 91 70.3
Cc02_g25630 Coffea canephora HOM05D002770 ORTHO05D003011 2.6e-30 135.2 92 67.4
AUR62023367 Chenopodium quinoa HOM05D002770 ORTHO05D003011 9.7e-30 133.3 92 68.5
unitig_26.g8859 Utricularia gibba HOM05D002770 ORTHO05D003011 9.7e-30 133.3 92 67.4
MSTRG.20663 Avicennia marina HOM05D002770 ORTHO05D003011 1.3e-29 132.9 92 66.3
EL10Ac1g00714 Beta vulgaris HOM05D002770 ORTHO05D003011 1.3e-29 132.9 92 67.4
BcaB02g08839 Brassica carinata HOM05D002770 ORTHO05D003011 1.3e-29 132.9 91 70.3
DCAR_025025 Daucus carota HOM05D002770 ORTHO05D003011 1.3e-29 132.9 91 67.0
CARHR139850 Cardamine hirsuta HOM05D002770 ORTHO05D003011 2.2e-29 132.1 91 69.2
Oeu002904.1 Olea europaea HOM05D002770 ORTHO05D003011 2.2e-29 132.1 92 66.3
Sabra14G0032100 Salix brachista HOM05D002770 ORTHO05D003011 6.3e-29 130.6 90 71.1
Potri.014G044200 Populus trichocarpa HOM05D002770 ORTHO05D003011 8.2e-29 130.2 90 70.0
MBI04_g03343_MAGBIO Magnolia biondii HOM05D002770 ORTHO05D003011 3.1e-28 128.3 91 65.9
SalBow4G3318 Salvia bowleyana HOM05D002770 ORTHO05D003011 7.0e-28 127.1 92 63.0
Aa31LG1G26180 Aethionema arabicum HOM05D002770 ORTHO05D003011 9.1e-28 126.7 86 67.4
Lj3g0001773 Lotus japonicus HOM05D002770 ORTHO05D003011 2.9e-26 121.7 92 63.0
Glyma.03G103500 Glycine max HOM05D002770 ORTHO05D003011 3.8e-26 121.3 92 66.3
Lj9A550T68 Lonicera japonica HOM05D002770 ORTHO05D003011 6.5e-26 120.6 91 63.7
SGA_v2.0_scaffold77G25255 Striga asiatica HOM05D002770 ORTHO05D003011 5.5e-25 117.5 84 66.7
Actinidia05788 Actinidia chinensis HOM05D002770 ORTHO05D003011 7.2e-25 117.1 83 68.7
Glyma.07G120500 Glycine max HOM05D002770 ORTHO05D003011 1.2e-24 116.3 92 62.0
HanXRQChr06g0168271 Helianthus annuus HOM05D002770 ORTHO05D003011 2.1e-24 115.5 97 56.7
Hund27419 Selenicereus undatus HOM05D002770 ORTHO05D003011 2.7e-24 115.2 97 57.7
ECA236G0339 Erigeron canadensis HOM05D002770 ORTHO05D003011 8.0e-24 113.6 94 57.4
ATR1136G174 Amborella trichopoda HOM05D002770 ORTHO05D003011 1.0e-23 113.2 94 58.5
Ca_23142_v3 Cicer arietinum L. HOM05D002770 ORTHO05D003011 2.3e-23 112.1 91 58.2
Lsat_1_v5_gn_7_11860 Lactuca sativa HOM05D002770 ORTHO05D003011 3.0e-23 111.7 95 53.7
Lalb_Chr07g0195181 Lupinus albus HOM05D002770 ORTHO05D003011 5.2e-23 110.9 91 58.2
arahy.Tifrunner.gnm1.ann1.S2VHS4 Arachis hypogaea HOM05D002770 ORTHO05D003011 6.8e-23 110.5 91 58.2
Phvul.010G041600 Phaseolus vulgaris HOM05D002770 ORTHO05D003011 2.0e-22 109.0 92 59.8
Psat0s4427g0040 Pisum sativum HOM05D002770 ORTHO05D003011 2.6e-22 108.6 91 54.9
TPR.G17359 Trifolium pratense HOM05D002770 ORTHO05D003011 7.5e-22 107.1 92 58.7
HPP92_022441 Vanilla planifolia HOM05D002770 ORTHO05D003011 1.7e-21 105.9 90 58.9
VMungo0331G1148 Vigna mungo HOM05D002770 ORTHO05D003011 2.2e-21 105.5 92 57.6
Gohir.D08G065500 Gossypium hirsutum HOM05D002770 ORTHO05D003011 3.7e-21 104.8 65 76.9
Gorai.004G067800 Gossypium raimondii HOM05D002770 ORTHO05D003011 3.7e-21 104.8 65 76.9
Medtr8g009290 Medicago truncatula HOM05D002770 ORTHO05D003011 1.1e-20 103.2 91 56.0
MD07G1089000 Malus domestica HOM05D002770 ORTHO05D003011 4.1e-20 101.3 91 60.4
MD07G1089800 Malus domestica HOM05D002770 ORTHO05D003011 1.3e-18 96.3 68 72.1
BcaB01g03302 Brassica carinata HOM05D002770 ORTHO05D003011 8.8e-15 83.6 53 71.7
MD16G1135300 Malus domestica HOM05D002770 ORTHO05D003011 8.3e-13 77.0 91 39.6
CiPaw.01G128600 Carya illinoinensis HOM05D002770 ORTHO05D003011 3.1e-12 75.1 91 40.7
Manes.03G212100 Manihot esculenta HOM05D002770 ORTHO05D003011 3.1e-12 75.1 93 43.0
FAN12G0637 Fragaria x ananassa HOM05D002770 ORTHO05D003011 4.1e-12 74.7 91 40.7
FvH4_4g21580 Fragaria vesca HOM05D002770 ORTHO05D003011 5.4e-12 74.3 91 40.7
Potri.010G002800 Populus trichocarpa HOM05D002770 ORTHO05D003011 5.4e-12 74.3 91 41.8
RcHm_v2.0_Chr4g0427691 Rosa chinensis HOM05D002770 ORTHO05D003011 7.0e-12 73.9 91 39.6
BcaB01g03304 Brassica carinata HOM05D002770 ORTHO05D003011 1.2e-11 73.2 84 47.6
Eucgr.B03964 Eucalyptus grandis HOM05D002770 ORTHO05D003011 2.0e-11 72.4 91 38.5
FAN07G2694 Fragaria x ananassa HOM05D002770 ORTHO05D003011 2.0e-11 72.4 91 40.7
Cfa015736 Carpinus fangiana HOM05D002770 ORTHO05D003011 4.5e-11 71.2 91 40.7
FAN17G1618 Fragaria x ananassa HOM05D002770 ORTHO05D003011 4.5e-11 71.2 90 41.1
MD13G1140500 Malus domestica HOM05D002770 ORTHO05D003011 5.9e-11 70.9 91 39.6
TAR365G0012 Trochodendron aralioides HOM05D002770 ORTHO05D003011 7.8e-11 70.5 91 34.1
PSO761G0657 Papaver somniferum HOM05D002770 ORTHO05D003011 1.0e-10 70.1 92 40.2
Haze_00760 Corylus avellana HOM05D002770 ORTHO05D003011 1.3e-10 69.7 91 40.7
Dinv29500 Davidia involucrata HOM05D002770 ORTHO05D003011 1.7e-10 69.3 92 38.0
ATR0796G162 Amborella trichopoda HOM05D002770 ORTHO05D003011 2.3e-10 68.9 83 41.0
Cpa.g.sc146.17 Carica papaya HOM05D002770 ORTHO05D003011 2.3e-10 68.9 91 38.5
MBI18_g10383_MAGBIO Magnolia biondii HOM05D002770 ORTHO05D003011 2.3e-10 68.9 91 36.3
PSO210G1766 Papaver somniferum HOM05D002770 ORTHO05D003011 2.3e-10 68.9 92 39.1
Sabra10G0002200 Salix brachista HOM05D002770 ORTHO05D003011 2.9e-10 68.6 84 39.3
Peaxi162Scf00126g01020 Petunia axillaris HOM05D002770 ORTHO05D003011 3.8e-10 68.2 92 40.2
Hma1.2p1_2234F.1_g317660 Hydrangea macrophylla HOM05D002770 ORTHO05D003011 6.6e-10 67.4 92 35.9
Solyc01g057020.3 Solanum lycopersicum HOM05D002770 ORTHO05D003011 6.6e-10 67.4 92 41.3
Sopen01g021230 Solanum pennellii HOM05D002770 ORTHO05D003011 6.6e-10 67.4 92 41.3
AL3G18130 Arabidopsis lyrata HOM05D002770 ORTHO05D003011 1.1e-09 66.6 95 36.8
Lj6C702G8 Lonicera japonica HOM05D002770 ORTHO05D003011 1.1e-09 66.6 91 38.5
PGSC0003DMG401019999 Solanum tuberosum HOM05D002770 ORTHO05D003011 1.5e-09 66.2 92 40.2
AT3G06960 Arabidopsis thaliana HOM05D002770 ORTHO05D003011 1.9e-09 65.9 83 39.8
QL06p014372 Quercus lobata HOM05D002770 ORTHO05D003011 1.9e-09 65.9 91 37.4
COL.COLO4_34510 Corchorus olitorius HOM05D002770 ORTHO05D003011 2.5e-09 65.5 91 38.5
GSVIVG01017694001 Vitis vinifera HOM05D002770 ORTHO05D003011 2.5e-09 65.5 91 37.4
Thecc.04G313600 Theobroma cacao HOM05D002770 ORTHO05D003011 3.3e-09 65.1 91 37.4
Duzib212G0204 Durio zibethinus HOM05D002770 ORTHO05D003011 4.3e-09 64.7 91 37.4
Aqoxy2G02502 Aquilegia oxysepala HOM05D002770 ORTHO05D003011 5.6e-09 64.3 93 36.6
VMungo1309G0165 Vigna mungo HOM05D002770 ORTHO05D003011 5.6e-09 64.3 92 37.0
Phvul.009G242200 Phaseolus vulgaris HOM05D002770 ORTHO05D003011 9.5e-09 63.5 92 37.0
Cc08_g04620 Coffea canephora HOM05D002770 ORTHO05D003011 2.1e-08 62.4 68 41.2
Psat1g149840 Pisum sativum HOM05D002770 ORTHO05D003011 2.1e-08 62.4 92 35.9
THA.LOC104818928 Tarenaya hassleriana HOM05D002770 ORTHO05D003011 2.1e-08 62.4 97 37.1
Lsat_1_v5_gn_1_40001 Lactuca sativa HOM05D002770 ORTHO05D003011 6.1e-08 60.8 81 45.7
CANSAT64G0103 Cannabis sativa HOM05D002770 ORTHO05D003011 1.0e-07 60.1 91 37.4
Ciclev10004947m.g Citrus clementina HOM05D002770 ORTHO05D003011 1.0e-07 60.1 91 34.1
Glyma.15G157800 Glycine max HOM05D002770 ORTHO05D003011 1.0e-07 60.1 89 38.2
Lj6g0024524 Lotus japonicus HOM05D002770 ORTHO05D003011 1.0e-07 60.1 92 38.0
Lalb_Chr18g0052121 Lupinus albus HOM05D002770 ORTHO05D003011 1.0e-07 60.1 92 37.0
Rhsim02G0072000 Rhododendron simsii HOM05D002770 ORTHO05D003011 1.0e-07 60.1 86 37.2
Actinidia30952 Actinidia chinensis HOM05D002770 ORTHO05D003011 1.4e-07 59.7 45 64.4
BcaB04g21302 Brassica carinata HOM05D002770 ORTHO05D003011 1.8e-07 59.3 91 35.2
Gohir.A12G148900 Gossypium hirsutum HOM05D002770 ORTHO05D003011 1.8e-07 59.3 91 34.1
BNapus_Darmor_BZH_scaffold_117p00170 Brassica napus HOM05D002770 ORTHO05D003011 3.0e-07 58.5 91 34.1
BraA01t04406Z Brassica rapa HOM05D002770 ORTHO05D003011 3.0e-07 58.5 91 34.1
CSS0020021 Camellia sinensis var. sinensis HOM05D002770 ORTHO05D003011 3.0e-07 58.5 87 39.1
CSS0034121 Camellia sinensis var. sinensis HOM05D002770 ORTHO05D003011 3.0e-07 58.5 87 39.1
Gohir.A06G180900 Gossypium hirsutum HOM05D002770 ORTHO05D003011 4.0e-07 58.2 91 33.0
Gohir.D06G187700 Gossypium hirsutum HOM05D002770 ORTHO05D003011 4.0e-07 58.2 91 33.0
Gorai.010G220000 Gossypium raimondii HOM05D002770 ORTHO05D003011 4.0e-07 58.2 91 33.0
EL10Ac3g06238 Beta vulgaris HOM05D002770 ORTHO05D003011 5.2e-07 57.8 93 35.5
BcaC09g47928 Brassica carinata HOM05D002770 ORTHO05D003011 5.2e-07 57.8 91 34.1
BolC1t05577H Brassica oleracea HOM05D002770 ORTHO05D003011 5.2e-07 57.8 91 34.1
DCAR_023412 Daucus carota HOM05D002770 ORTHO05D003011 5.2e-07 57.8 93 35.5
Medtr2g035830 Medicago truncatula HOM05D002770 ORTHO05D003011 5.2e-07 57.8 92 37.0
arahy.Tifrunner.gnm1.ann1.PPN3ZF Arachis hypogaea HOM05D002770 ORTHO05D003011 6.8e-07 57.4 92 37.0
Carub.0003s0648 Capsella rubella HOM05D002770 ORTHO05D003011 8.9e-07 57.0 95 32.6
TWI73G0971 Tripterygium wilfordii HOM05D002770 ORTHO05D003011 8.9e-07 57.0 99 35.4
arahy.Tifrunner.gnm1.ann1.09HRLI Arachis hypogaea HOM05D002770 ORTHO05D003011 1.5e-06 56.2 92 35.9
Thhalv10020620m.g Eutrema salsugineum HOM05D002770 ORTHO05D003011 2.0e-06 55.8 98 32.7
Oeu002201.1 Olea europaea HOM05D002770 ORTHO05D003011 2.0e-06 55.8 67 38.8
Aa31LG5G17520 Aethionema arabicum HOM05D002770 ORTHO05D003011 2.6e-06 55.5 94 30.9
Sp3g05910 Schrenkiella parvula HOM05D002770 ORTHO05D003011 2.6e-06 55.5 98 31.6
Ca_01993_v3 Cicer arietinum L. HOM05D002770 ORTHO05D003011 3.4e-06 55.1 92 34.8
TPR.G31846 Trifolium pratense HOM05D002770 ORTHO05D003011 3.4e-06 55.1 93 34.4
CARHR081560 Cardamine hirsuta HOM05D002770 ORTHO05D003011 4.4e-06 54.7 94 34.0
AUR62002542 Chenopodium quinoa HOM05D002770 ORTHO05D003011 4.4e-06 54.7 93 34.4
Nn3g21931 Nelumbo nucifera HOM05D002770 ORTHO05D003011 4.4e-06 54.7 91 30.8
Os01g0251000 Oryza sativa ssp. japonica HOM05D002770 ORTHO05D003011 4.4e-06 54.7 55 41.8
AUR62029961 Chenopodium quinoa HOM05D002770 ORTHO05D003011 7.5e-06 53.9 81 34.6
ClCG06G004160 Citrullus lanatus HOM05D002770 ORTHO05D003011 7.5e-06 53.9 89 40.4
Oeu022710.2 Olea europaea HOM05D002770 ORTHO05D003011 9.8e-06 53.5 62 35.5
HPP92_001946 Vanilla planifolia HOM05D002770 ORTHO05D003011 9.8e-06 53.5 67 35.8


User provided reference genes

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