Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G3200 Fragaria x ananassa HOM05D005802 ORTHO05D006992 3.3e-150 535.0 276 100.0
FAN10G1300 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.0e-146 523.5 276 98.2
FAN06G3617 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.3e-146 523.1 276 97.8
FAN06G1875 Fragaria x ananassa HOM05D005802 ORTHO05D006992 2.7e-144 515.4 286 94.4
FAN03G1851 Fragaria x ananassa HOM05D005802 ORTHO05D006992 3.9e-143 511.5 276 95.3
FAN01G2984 Fragaria x ananassa HOM05D005802 ORTHO05D006992 8.5e-130 467.2 286 88.5
RcHm_v2.0_Chr5g0028911 Rosa chinensis HOM05D005802 ORTHO05D006992 1.5e-121 439.9 281 84.7
FvH4_7g11150 Fragaria vesca HOM05D005802 ORTHO05D006992 7.2e-121 437.6 251 93.6
MD02G1209900 Malus domestica HOM05D005802 ORTHO05D006992 5.6e-113 411.4 273 79.1
Prupe.2G138600 Prunus persica HOM05D005802 ORTHO05D006992 9.8e-110 400.6 276 77.5
Haze_02673 Corylus avellana HOM05D005802 ORTHO05D006992 4.0e-103 378.6 281 70.8
CiPaw.13G033000 Carya illinoinensis HOM05D005802 ORTHO05D006992 8.9e-103 377.5 276 71.7
QL04p039160 Quercus lobata HOM05D005802 ORTHO05D006992 3.5e-99 365.5 276 70.7
COL.COLO4_12497 Corchorus olitorius HOM05D005802 ORTHO05D006992 1.0e-98 364.0 280 70.4
Ciclev10021687m.g Citrus clementina HOM05D005802 ORTHO05D006992 3.9e-98 362.1 276 71.0
CANSAT56G0664 Cannabis sativa HOM05D005802 ORTHO05D006992 5.0e-98 361.7 278 70.5
Duzib133G1160 Durio zibethinus HOM05D005802 ORTHO05D006992 5.6e-97 358.2 279 71.0
PGR042G3152 Punica granatum HOM05D005802 ORTHO05D006992 5.6e-97 358.2 277 67.9
GSVIVG01027639001 Vitis vinifera HOM05D005802 ORTHO05D006992 7.3e-97 357.8 276 68.5
Thecc.01G381900 Theobroma cacao HOM05D005802 ORTHO05D006992 9.5e-97 357.5 279 69.9
Lj3g0015572 Lotus japonicus HOM05D005802 ORTHO05D006992 1.6e-96 356.7 277 68.2
Eucgr.D02489 Eucalyptus grandis HOM05D005802 ORTHO05D006992 2.1e-96 356.3 276 68.8
Glyma.01G137000 Glycine max HOM05D005802 ORTHO05D006992 6.2e-96 354.8 277 68.2
Gohir.A12G094400 Gossypium hirsutum HOM05D005802 ORTHO05D006992 6.2e-96 354.8 276 68.8
Manes.05G048500 Manihot esculenta HOM05D005802 ORTHO05D006992 2.3e-95 352.8 276 66.7
Cpa.g.sc49.162 Carica papaya HOM05D005802 ORTHO05D006992 3.1e-95 352.4 277 68.2
Cfa011175 Carpinus fangiana HOM05D005802 ORTHO05D006992 3.1e-95 352.4 266 70.3
Phvul.010G077700 Phaseolus vulgaris HOM05D005802 ORTHO05D006992 5.2e-95 351.7 277 67.9
CSS0000774 Camellia sinensis var. sinensis HOM05D005802 ORTHO05D006992 1.2e-94 350.5 276 67.4
Gohir.D12G097200 Gossypium hirsutum HOM05D005802 ORTHO05D006992 1.2e-94 350.5 276 67.4
Atru.chr5.259 Acer truncatum HOM05D005802 ORTHO05D006992 9.9e-94 347.4 274 69.7
Actinidia12678 Actinidia chinensis HOM05D005802 ORTHO05D006992 1.7e-93 346.7 271 66.4
Gorai.008G105800 Gossypium raimondii HOM05D005802 ORTHO05D006992 1.7e-93 346.7 276 67.4
Potri.014G060000 Populus trichocarpa HOM05D005802 ORTHO05D006992 1.7e-93 346.7 275 69.5
AL5G42970 Arabidopsis lyrata HOM05D005802 ORTHO05D006992 2.9e-93 345.9 279 66.3
Sabra14G0043900 Salix brachista HOM05D005802 ORTHO05D006992 4.9e-93 345.1 279 67.7
AT3G60660 Arabidopsis thaliana HOM05D005802 ORTHO05D006992 8.3e-93 344.4 279 65.9
arahy.Tifrunner.gnm1.ann1.I9SF1K Arachis hypogaea HOM05D005802 ORTHO05D006992 1.1e-92 344.0 275 66.9
THA.LOC104802463 Tarenaya hassleriana HOM05D005802 ORTHO05D006992 1.1e-92 344.0 279 66.3
Rhsim01G0150000 Rhododendron simsii HOM05D005802 ORTHO05D006992 1.4e-92 343.6 276 64.9
Aa31LG10G14950 Aethionema arabicum HOM05D005802 ORTHO05D006992 4.1e-92 342.0 279 65.9
CARHR171060 Cardamine hirsuta HOM05D005802 ORTHO05D006992 5.4e-92 341.7 279 65.6
Sc02g0002770 Simmondsia chinensis HOM05D005802 ORTHO05D006992 1.2e-91 340.5 276 65.6
TWI23G1076 Tripterygium wilfordii HOM05D005802 ORTHO05D006992 1.6e-91 340.1 274 66.1
BolC8t51149H Brassica oleracea HOM05D005802 ORTHO05D006992 2.7e-91 339.3 276 66.3
C08p35600 Brassica napus HOM05D005802 ORTHO05D006992 3.5e-91 339.0 279 65.6
TAR375G0577 Trochodendron aralioides HOM05D005802 ORTHO05D006992 7.8e-91 337.8 274 63.9
Thhalv10006164m.g Eutrema salsugineum HOM05D005802 ORTHO05D006992 5.1e-90 335.1 279 64.5
AUR62013665 Chenopodium quinoa HOM05D005802 ORTHO05D006992 6.6e-90 334.7 279 64.5
Nn6g34003 Nelumbo nucifera HOM05D005802 ORTHO05D006992 8.6e-90 334.3 276 65.9
Sp5g02580 Schrenkiella parvula HOM05D005802 ORTHO05D006992 8.6e-90 334.3 279 63.8
Lsat_1_v5_gn_4_44621 Lactuca sativa HOM05D005802 ORTHO05D006992 2.5e-89 332.8 277 63.9
BcaC07g40584 Brassica carinata HOM05D005802 ORTHO05D006992 4.3e-89 332.0 281 63.7
A09p52850 Brassica napus HOM05D005802 ORTHO05D006992 7.3e-89 331.3 279 63.8
arahy.Tifrunner.gnm1.ann1.GQKS8P Arachis hypogaea HOM05D005802 ORTHO05D006992 2.1e-88 329.7 311 59.8
Psat7g217800 Pisum sativum HOM05D005802 ORTHO05D006992 8.1e-88 327.8 275 63.6
TPR.G5024 Trifolium pratense HOM05D005802 ORTHO05D006992 8.1e-88 327.8 278 64.7
DCAR_025098 Daucus carota HOM05D005802 ORTHO05D006992 4.0e-87 325.5 276 64.9
Carub.0005s2739 Capsella rubella HOM05D005802 ORTHO05D006992 5.2e-87 325.1 270 64.1
MSTRG.17165 Avicennia marina HOM05D005802 ORTHO05D006992 8.9e-87 324.3 274 62.0
Medtr4g026180 Medicago truncatula HOM05D005802 ORTHO05D006992 1.7e-85 320.1 274 63.1
Peaxi162Scf01052g00014 Petunia axillaris HOM05D005802 ORTHO05D006992 1.7e-85 320.1 276 60.9
ECA234G0875 Erigeron canadensis HOM05D005802 ORTHO05D006992 2.4e-84 316.2 283 61.8
CAN.G106.25 Capsicum annuum HOM05D005802 ORTHO05D006992 3.2e-84 315.8 276 60.9
HanXRQChr03g0088101 Helianthus annuus HOM05D005802 ORTHO05D006992 5.4e-84 315.1 280 61.4
AUR62004168 Chenopodium quinoa HOM05D005802 ORTHO05D006992 7.8e-83 311.2 279 62.4
PGSC0003DMG400007022 Solanum tuberosum HOM05D005802 ORTHO05D006992 1.3e-82 310.5 276 59.8
Sed0027573 Sechium edule HOM05D005802 ORTHO05D006992 1.7e-82 310.1 276 61.6
ClCG09G008930 Citrullus lanatus HOM05D005802 ORTHO05D006992 2.3e-82 309.7 277 61.0
VMungo0331G0187 Vigna mungo HOM05D005802 ORTHO05D006992 3.9e-82 308.9 252 65.5
Solyc05g050900.4 Solanum lycopersicum HOM05D005802 ORTHO05D006992 1.1e-81 307.4 276 59.4
Migut.B01600 Erythranthe guttata HOM05D005802 ORTHO05D006992 1.5e-81 307.0 274 58.8
Hund27376 Selenicereus undatus HOM05D005802 ORTHO05D006992 1.9e-81 306.6 280 62.1
Sopen05g029380 Solanum pennellii HOM05D005802 ORTHO05D006992 1.9e-81 306.6 276 59.4
Aqoxy7G00743 Aquilegia oxysepala HOM05D005802 ORTHO05D006992 2.5e-81 306.2 277 61.4
BraA09t40717Z Brassica rapa HOM05D005802 ORTHO05D006992 2.5e-81 306.2 344 52.3
SalBow5G5068 Salvia bowleyana HOM05D005802 ORTHO05D006992 1.6e-80 303.5 274 59.5
Cc02_g24280 Coffea canephora HOM05D005802 ORTHO05D006992 3.6e-80 302.4 277 58.1
PSO017G7043 Papaver somniferum HOM05D005802 ORTHO05D006992 3.6e-80 302.4 278 60.8
Dinv44124 Davidia involucrata HOM05D005802 ORTHO05D006992 1.4e-79 300.4 263 60.8
PSO478G1061 Papaver somniferum HOM05D005802 ORTHO05D006992 1.4e-79 300.4 278 60.4
CsaV3_7G026130 Cucumis sativus L. HOM05D005802 ORTHO05D006992 4.0e-79 298.9 277 61.0
RcHm_v2.0_Chr1g0349231 Rosa chinensis HOM05D005802 ORTHO05D006992 3.4e-78 295.8 200 80.0
Carub.0005s2750 Capsella rubella HOM05D005802 ORTHO05D006992 2.2e-77 293.1 267 61.4
Nitab4.5_0001329g0060 Nicotiana tabacum HOM05D005802 ORTHO05D006992 4.9e-77 292.0 266 57.5
Actinidia28320 Actinidia chinensis HOM05D005802 ORTHO05D006992 7.8e-75 284.6 225 64.9
SGA_v2.0_scaffold153G36973 Striga asiatica HOM05D005802 ORTHO05D006992 1.4e-71 273.9 251 56.6
vmacro21028 Vaccinium macrocarpon HOM05D005802 ORTHO05D006992 3.1e-71 272.7 277 57.0
Os07g0484500 Oryza sativa ssp. japonica HOM05D005802 ORTHO05D006992 1.7e-69 266.9 280 54.3
ATR1153G072 Amborella trichopoda HOM05D005802 ORTHO05D006992 1.9e-68 263.5 273 55.3
Ca_02431_v3 Cicer arietinum L. HOM05D005802 ORTHO05D006992 1.8e-66 256.9 261 56.7
Nitab4.5_0005050g0030 Nicotiana tabacum HOM05D005802 ORTHO05D006992 1.1e-65 254.2 275 52.4
CDE04G3422 Ceratophyllum demersum HOM05D005802 ORTHO05D006992 4.8e-64 248.8 288 50.3
Zm00001eb321530 Zea mays HOM05D005802 ORTHO05D006992 8.4e-61 238.0 275 49.8
RcHm_v2.0_Chr1g0349201 Rosa chinensis HOM05D005802 ORTHO05D006992 1.2e-59 234.2 349 47.9
TAR375G0251 Trochodendron aralioides HOM05D005802 ORTHO05D006992 2.7e-59 233.0 195 60.5
Lalb_Chr12g0208021 Lupinus albus HOM05D005802 ORTHO05D006992 1.3e-58 230.7 187 64.2
EL10Ac1g00841 Beta vulgaris HOM05D005802 ORTHO05D006992 2.3e-58 229.9 278 51.1
FAN03G0906 Fragaria x ananassa HOM05D005802 ORTHO05D006992 4.8e-56 222.2 115 96.5
FAN03G0348 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.1e-55 221.1 115 95.7
Lj7A534G38 Lonicera japonica HOM05D000908 ORTHO05D000789 2.0e-54 216.9 251 51.8
Oeu051925.1 Olea europaea HOM05D005802 ORTHO05D006992 1.8e-50 203.8 252 48.8
MELO3C021033.2 Cucumis melo HOM05D005802 ORTHO05D006992 1.1e-49 201.1 199 56.8
Mapoly0010s0189 Marchantia polymorpha HOM05D005802 ORTHO05D006992 9.7e-49 198.0 266 42.5
RcHm_v2.0_Chr1g0349161 Rosa chinensis HOM05D005802 ORTHO05D006992 1.4e-47 194.1 127 84.3
Oeu051926.1 Olea europaea HOM05D005802 ORTHO05D006992 7.2e-44 181.8 142 64.1
AagrBONN_evm.TU.Sc2ySwM_368.1567 Anthoceros agrestis HOM05D005802 ORTHO05D006992 6.1e-43 178.7 266 41.0
Pp3c6_12030 Physcomitrium patens HOM05D005802 ORTHO05D006992 7.9e-43 178.3 263 41.1
RcHm_v2.0_Chr1g0349241 Rosa chinensis HOM05D005802 ORTHO05D006992 7.9e-43 178.3 112 87.5
SMO347G0664 Selaginella moellendorffii HOM05D005802 ORTHO05D006992 8.2e-40 168.3 232 43.5
Ah.05g173880 Amaranthus hybridus HOM05D005802 ORTHO05D006992 2.6e-33 146.7 114 67.5
Ah.05g173870 Amaranthus hybridus HOM05D005802 ORTHO05D006992 3.3e-33 146.4 135 56.3
Actinidia33479 Actinidia chinensis HOM05D005802 ORTHO05D006992 4.8e-32 142.5 138 55.8
RcHm_v2.0_Chr1g0349251 Rosa chinensis HOM05D005802 ORTHO05D006992 3.5e-30 136.3 90 82.2
Oeu055514.1 Olea europaea HOM05D005802 ORTHO05D006992 2.9e-29 133.3 146 51.4
SHI22577 Sapria himalayana HOM05D005802 ORTHO05D006992 1.2e-27 127.9 160 47.5
SHI22578 Sapria himalayana HOM05D005802 ORTHO05D006992 1.1e-25 121.3 90 68.9
Cc00_g05150 Coffea canephora HOM05D005802 ORTHO05D006992 1.3e-24 117.9 116 58.6
Cc00_g05160 Coffea canephora HOM05D005802 ORTHO05D006992 2.2e-24 117.1 114 60.5
FAN10G4230 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.8e-23 114.0 56 94.6
Hma1.2p1_0072F.1_g038280 Hydrangea macrophylla HOM05D005802 ORTHO05D006992 1.2e-22 111.3 112 55.4
CBR_g48776 Chara braunii HOM05D005802 ORTHO05D006992 2.6e-22 110.2 259 33.2
RcHm_v2.0_Chr1g0349171 Rosa chinensis HOM05D005802 ORTHO05D006992 3.5e-22 109.8 58 96.6
Cre16.g672500 Chlamydomonas reinhardtii HOM05D005802 ORTHO05D006992 1.7e-21 107.5 265 32.5
Glyma.03G031466 Glycine max HOM05D005802 ORTHO05D006992 2.2e-21 107.1 90 65.6
Lalb_Chr12g0208011 Lupinus albus HOM05D005802 ORTHO05D006992 5.5e-20 102.4 74 73.0
Oeu045806.1 Olea europaea HOM05D005802 ORTHO05D006992 2.7e-19 100.1 74 67.6
ECA240G2706 Erigeron canadensis HOM05D001255 ORTHO05D001246 1.5e-17 94.4 65 73.8
C04p32020 Brassica napus HOM05D010895 ORTHO05D012939 4.4e-17 92.8 122 49.2
CARHR170760 Cardamine hirsuta HOM05D005802 ORTHO05D006992 2.2e-16 90.5 74 62.2
BolC4t24754H Brassica oleracea HOM05D005802 ORTHO05D006992 1.1e-15 88.2 109 53.2
FAN06G0568 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.1e-15 88.2 56 78.6
Dinv44127 Davidia involucrata HOM05D005802 ORTHO05D006992 1.7e-13 80.9 60 61.7
Glyma.03G031532 Glycine max HOM05D005802 ORTHO05D006992 1.5e-09 67.8 82 51.2
SGA_v2.0_scaffold123G33454 Striga asiatica HOM05D000451 ORTHO05D000351 1.2e-06 58.2 104 36.5


User provided reference genes

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