Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G3196 Fragaria x ananassa HOM05D002831 ORTHO05D004341 1.1e-97 360.1 215 100.0
FvH4_7g30190 Fragaria vesca HOM05D002831 ORTHO05D004341 6.9e-95 350.9 215 98.6
FAN03G0781 Fragaria x ananassa HOM05D002831 ORTHO05D004341 6.9e-95 350.9 215 98.1
FAN06G3328 Fragaria x ananassa HOM05D002831 ORTHO05D004341 6.9e-95 350.9 215 98.6
FAN01G0089 Fragaria x ananassa HOM05D002831 ORTHO05D004341 4.5e-94 348.2 215 97.2
FAN03G0359 Fragaria x ananassa HOM05D002831 ORTHO05D004341 5.0e-93 344.7 215 97.7
FAN10G0429 Fragaria x ananassa HOM05D002831 ORTHO05D004341 2.7e-83 312.4 215 90.2
RcHm_v2.0_Chr1g0378241 Rosa chinensis HOM05D002831 ORTHO05D004341 1.2e-78 297.0 203 90.6
Prupe.2G300400 Prunus persica HOM05D002831 ORTHO05D004341 8.5e-77 290.8 215 81.9
MD07G1278500 Malus domestica HOM05D002831 ORTHO05D004341 7.7e-70 267.7 216 81.0
MD01G1207900 Malus domestica HOM05D002831 ORTHO05D004341 8.8e-66 254.2 216 78.7
CANSAT11G0421 Cannabis sativa HOM05D002831 ORTHO05D004341 5.9e-62 241.5 215 76.7
Cfa016283 Carpinus fangiana HOM05D002831 ORTHO05D004341 2.8e-59 232.6 210 74.3
QL09p012962 Quercus lobata HOM05D002831 ORTHO05D004341 7.0e-55 218.0 213 71.4
CiPaw.06G003300 Carya illinoinensis HOM05D002831 ORTHO05D004341 5.9e-54 214.9 213 71.4
CiPaw.06G003100 Carya illinoinensis HOM05D002831 ORTHO05D004341 1.9e-52 209.9 213 70.9
Atru.chr1.379 Acer truncatum HOM05D002831 ORTHO05D004341 8.9e-50 201.1 213 58.2
Atru.ctg97_1.16 Acer truncatum HOM05D002831 ORTHO05D004341 8.9e-50 201.1 213 58.2
Manes.14G023000 Manihot esculenta HOM05D002831 ORTHO05D004341 1.3e-48 197.2 215 67.0
COL.COLO4_10060 Corchorus olitorius HOM05D002831 ORTHO05D004341 2.2e-48 196.4 214 57.5
Ciclev10005857m.g Citrus clementina HOM05D002831 ORTHO05D004341 3.7e-48 195.7 213 55.4
Haze_00039 Corylus avellana HOM05D002831 ORTHO05D004341 3.7e-48 195.7 145 66.2
Thecc.03G183700 Theobroma cacao HOM05D002831 ORTHO05D004341 4.9e-48 195.3 213 57.3
Dinv28390 Davidia involucrata HOM05D002831 ORTHO05D004341 2.4e-47 193.0 210 56.7
Cpa.g.sc107.104 Carica papaya HOM05D002831 ORTHO05D004341 5.4e-47 191.8 213 56.3
Dinv35249 Davidia involucrata HOM05D002831 ORTHO05D004341 7.0e-47 191.4 200 59.0
Duzib068G1050 Durio zibethinus HOM05D002831 ORTHO05D004341 6.6e-45 184.9 213 54.9
Manes.06G152100 Manihot esculenta HOM05D002831 ORTHO05D004341 6.6e-45 184.9 212 63.7
Duzib084G1013 Durio zibethinus HOM05D002831 ORTHO05D004341 1.9e-44 183.3 213 55.9
Duzib205G1365 Durio zibethinus HOM05D002831 ORTHO05D004341 4.3e-44 182.2 212 56.1
Potri.017G143215 Populus trichocarpa HOM05D002831 ORTHO05D004341 1.6e-43 180.3 215 54.4
Actinidia34155 Actinidia chinensis HOM05D002831 ORTHO05D004341 1.8e-42 176.8 210 54.8
TWI23G0387 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 2.3e-42 176.4 213 48.8
Phvul.004G109000 Phaseolus vulgaris HOM05D002831 ORTHO05D004341 5.2e-42 175.3 207 60.9
CiPaw.12G018300 Carya illinoinensis HOM05D002831 ORTHO05D004341 1.5e-41 173.7 148 62.2
VMungo0464G0591 Vigna mungo HOM05D002831 ORTHO05D004341 4.4e-41 172.2 207 59.9
Sabra04G0053100 Salix brachista HOM05D002831 ORTHO05D004341 9.8e-41 171.0 213 51.6
arahy.Tifrunner.gnm1.ann1.VWVY78 Arachis hypogaea HOM05D002831 ORTHO05D010484 1.3e-40 170.6 207 60.4
Potri.004G079900 Populus trichocarpa HOM05D002831 ORTHO05D004341 1.3e-40 170.6 213 52.6
Glyma.16G179300 Glycine max HOM05D002831 ORTHO05D004341 6.4e-40 168.3 207 59.9
CSS0012099 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 8.3e-40 167.9 210 49.5
CSS0034926 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 8.3e-40 167.9 210 49.5
TAR374G0609 Trochodendron aralioides HOM05D002831 ORTHO05D004341 1.4e-39 167.2 212 53.8
TAR375G0840 Trochodendron aralioides HOM05D002831 ORTHO05D004341 3.2e-39 166.0 213 64.3
Gohir.D09G177200 Gossypium hirsutum HOM05D002831 ORTHO05D004341 5.4e-39 165.2 216 52.8
Gorai.006G199200 Gossypium raimondii HOM05D002831 ORTHO05D004341 5.4e-39 165.2 216 52.3
CSS0004722 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 1.2e-38 164.1 210 47.1
CSS0021117 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 1.2e-38 164.1 210 47.1
Sabra17G0120100 Salix brachista HOM05D002831 ORTHO05D004341 1.7e-37 160.2 213 49.8
Lj1P1004T73 Lonicera japonica HOM05D002831 ORTHO05D004341 8.6e-37 157.9 207 46.9
Actinidia08576 Actinidia chinensis HOM05D002831 ORTHO05D004341 1.5e-36 157.1 210 51.4
PGR042G3073 Punica granatum HOM05D002831 ORTHO05D004341 9.5e-36 154.5 213 50.7
Eucgr.A02748 Eucalyptus grandis HOM05D002831 ORTHO05D004341 1.2e-35 154.1 214 49.1
Lalb_Chr03g0034811 Lupinus albus HOM05D002831 ORTHO05D004341 3.6e-35 152.5 207 59.9
Oeu036905.1 Olea europaea HOM05D002831 ORTHO05D004341 6.2e-35 151.8 214 50.5
Gohir.A09G182600 Gossypium hirsutum HOM05D002831 ORTHO05D004341 8.1e-35 151.4 213 51.2
PGSC0003DMG400028898 Solanum tuberosum HOM05D002831 ORTHO05D004341 2.3e-34 149.8 210 50.0
Rhsim03G0190700 Rhododendron simsii HOM05D002831 ORTHO05D004341 3.1e-34 149.4 198 51.5
Hma1.2p1_0274F.1_g110180 Hydrangea macrophylla HOM05D002831 ORTHO05D004341 4.0e-34 149.1 212 54.2
Cc02_g02420 Coffea canephora HOM05D002831 ORTHO05D004341 6.8e-34 148.3 210 49.0
Gohir.D12G256900 Gossypium hirsutum HOM05D002831 ORTHO05D004341 6.8e-34 148.3 214 50.9
Gorai.008G275100 Gossypium raimondii HOM05D002831 ORTHO05D004341 6.8e-34 148.3 214 50.9
TWI14G0525 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 6.8e-34 148.3 215 47.9
vmacro06629 Vaccinium macrocarpon HOM05D002831 ORTHO05D004341 6.8e-34 148.3 198 52.0
Hma1.2p1_0327F.1_g126410 Hydrangea macrophylla HOM05D002831 ORTHO05D004341 8.9e-34 147.9 208 58.2
Sopen06g012030 Solanum pennellii HOM05D002831 ORTHO05D004341 8.9e-34 147.9 210 49.5
ClCG05G008340 Citrullus lanatus HOM05D002831 ORTHO05D004341 2.0e-33 146.7 207 62.8
CsaV3_3G017430 Cucumis sativus L. HOM05D002831 ORTHO05D004341 2.0e-33 146.7 207 61.4
Peaxi162Scf00618g00748 Petunia axillaris HOM05D001680 ORTHO05D004341 2.6e-33 146.4 211 48.3
GSVIVG01028866001 Vitis vinifera HOM05D002831 ORTHO05D010484 2.6e-33 146.4 213 61.0
Nitab4.5_0000084g0400 Nicotiana tabacum HOM05D002831 ORTHO05D004341 4.4e-33 145.6 214 49.1
Gohir.A12G255500 Gossypium hirsutum HOM05D002831 ORTHO05D004341 7.6e-33 144.8 214 50.0
Nitab4.5_0000572g0140 Nicotiana tabacum HOM05D002831 ORTHO05D004341 7.6e-33 144.8 212 49.1
Glyma.09G132500 Glycine max HOM05D002831 ORTHO05D004341 9.9e-33 144.4 208 51.0
MELO3C006940.2 Cucumis melo HOM05D002831 ORTHO05D004341 1.7e-32 143.7 207 60.4
Nitab4.5_0003825g0080 Nicotiana tabacum HOM05D002831 ORTHO05D004341 4.9e-32 142.1 214 49.5
Oeu060465.1 Olea europaea HOM05D002831 ORTHO05D004341 1.1e-31 141.0 202 45.5
SalBow4G1512 Salvia bowleyana HOM05D002831 ORTHO05D004341 1.4e-31 140.6 211 49.3
Actinidia31838 Actinidia chinensis HOM05D002831 ORTHO05D004341 7.1e-31 138.3 212 47.6
Gorai.007G012600 Gossypium raimondii HOM05D002831 ORTHO05D004341 1.2e-30 137.5 215 49.3
Oeu045362.1 Olea europaea HOM05D002831 ORTHO05D004341 1.2e-30 137.5 212 48.1
TWI39G0102 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 1.2e-30 137.5 214 44.4
Sed0011382 Sechium edule HOM05D002831 ORTHO05D004341 2.1e-30 136.7 207 59.4
Peaxi162Scf00444g00016 Petunia axillaris HOM05D002831 ORTHO05D004341 2.7e-30 136.3 214 48.6
Rhsim09G0200400 Rhododendron simsii HOM05D002831 ORTHO05D004341 3.5e-30 136.0 210 46.7
DCAR_009393 Daucus carota HOM05D002831 ORTHO05D004341 7.8e-30 134.8 210 45.7
Gohir.D11G011100 Gossypium hirsutum HOM05D002831 ORTHO05D004341 2.3e-29 133.3 215 47.9
Gohir.A11G011900 Gossypium hirsutum HOM05D002831 ORTHO05D004341 1.1e-28 131.0 215 47.9
DCAR_020268 Daucus carota HOM05D002831 ORTHO05D004341 1.9e-28 130.2 210 40.5
Aqoxy7G00243 Aquilegia oxysepala HOM05D002831 ORTHO05D004341 2.5e-28 129.8 215 46.5
Glyma.10G231300 Glycine max HOM05D002831 ORTHO05D004341 3.3e-28 129.4 207 54.1
PGSC0003DMG400010167 Solanum tuberosum HOM05D002831 ORTHO05D004341 3.3e-28 129.4 198 47.5
CAN.G126.12 Capsicum annuum HOM05D002831 ORTHO05D004341 9.6e-28 127.9 212 44.8
PSO478G4817 Papaver somniferum HOM05D002831 ORTHO05D004341 9.6e-28 127.9 202 44.1
Lj5g0008853 Lotus japonicus HOM05D002831 ORTHO05D004341 1.2e-27 127.5 209 54.5
THA.LOC104800271 Tarenaya hassleriana HOM05D002831 ORTHO05D004341 1.2e-27 127.5 195 41.5
MSTRG.27090 Avicennia marina HOM05D002831 ORTHO05D004341 1.6e-27 127.1 210 48.1
Sed0001656 Sechium edule HOM05D002831 ORTHO05D004341 1.6e-27 127.1 206 59.2
Glyma.20G162500 Glycine max HOM05D002831 ORTHO05D004341 4.7e-27 125.6 207 53.1
Ca_10728_v3 Cicer arietinum L. HOM05D002831 ORTHO05D004341 8.1e-27 124.8 207 54.6
PSO782G2858 Papaver somniferum HOM05D002831 ORTHO05D004341 8.1e-27 124.8 216 43.1
Sopen03g003930 Solanum pennellii HOM05D002831 ORTHO05D004341 8.1e-27 124.8 199 46.7
Solyc06g036250.2 Solanum lycopersicum HOM05D002831 ORTHO05D004341 1.1e-26 124.4 148 47.3
Lalb_Chr02g0141231 Lupinus albus HOM05D002831 ORTHO05D004341 1.4e-26 124.0 208 48.1
EL10Ac3g05428 Beta vulgaris HOM05D002831 ORTHO05D004341 3.1e-26 122.9 196 44.9
Lalb_Chr06g0161301 Lupinus albus HOM05D002831 ORTHO05D004341 1.2e-25 120.9 207 56.5
Gorai.004G117400 Gossypium raimondii HOM05D002831 ORTHO05D004341 2.0e-25 120.2 201 47.8
MBI11_g04751_MAGBIO Magnolia biondii HOM05D002831 ORTHO05D004341 2.6e-25 119.8 201 55.2
MSTRG.8713 Avicennia marina HOM05D002831 ORTHO05D004341 3.4e-25 119.4 205 55.1
MSTRG.74 Avicennia marina HOM05D002831 ORTHO05D004341 4.4e-25 119.0 210 42.4
AUR62021127 Chenopodium quinoa HOM05D002831 ORTHO05D004341 4.4e-25 119.0 192 40.1
Psat6g196360 Pisum sativum HOM05D002831 ORTHO05D004341 7.6e-25 118.2 208 54.8
Gohir.A08G098200 Gossypium hirsutum HOM05D002831 ORTHO05D004341 1.7e-24 117.1 201 47.3
AUR62031417 Chenopodium quinoa HOM05D002831 ORTHO05D004341 3.8e-24 115.9 192 39.1
Gohir.D08G109800 Gossypium hirsutum HOM05D002831 ORTHO05D004341 6.4e-24 115.2 201 47.3
VMungo0720G1018 Vigna mungo HOM05D002831 ORTHO05D004341 6.4e-24 115.2 207 54.6
TPR.G7753 Trifolium pratense HOM05D002831 ORTHO05D004341 8.4e-24 114.8 208 51.4
Nitab4.5_0000248g0010 Nicotiana tabacum HOM05D002831 ORTHO05D004341 4.2e-23 112.5 150 46.7
Sp7g23710 Schrenkiella parvula HOM05D002831 ORTHO05D004341 1.0e-21 107.8 213 38.0
Sabra06G0007800 Salix brachista HOM05D002831 ORTHO05D010484 8.7e-21 104.8 128 43.8
Ah.07g206590 Amaranthus hybridus HOM05D002831 ORTHO05D004341 1.9e-20 103.6 211 38.9
CARHR233110 Cardamine hirsuta HOM05D002831 ORTHO05D004341 1.9e-20 103.6 213 37.1
AL7G27410 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 7.3e-20 101.7 213 37.1
Carub.0007s1530 Capsella rubella HOM05D002831 ORTHO05D004341 7.3e-20 101.7 213 37.1
Thhalv10027473m.g Eutrema salsugineum HOM05D002831 ORTHO05D004341 1.3e-19 100.9 213 37.1
BraA01t01645Z Brassica rapa HOM05D002831 ORTHO05D004341 2.1e-19 100.1 214 37.9
AT4G25670 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 3.6e-19 99.4 214 36.4
BraA02t06237Z Brassica rapa HOM05D002831 ORTHO05D004341 6.2e-19 98.6 199 35.2
BNapus_Darmor_BZH_scaffold_232p00070 Brassica napus HOM05D002831 ORTHO05D004341 8.1e-19 98.2 199 35.2
ATR0661G020 Amborella trichopoda HOM05D002831 ORTHO05D004341 3.1e-18 96.3 220 39.1
CAN.G204.16 Capsicum annuum HOM05D002831 ORTHO05D004341 6.9e-18 95.1 199 43.2
AL7G27390 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 9.0e-18 94.7 214 37.4
BolC1t02046H Brassica oleracea HOM05D002831 ORTHO05D004341 9.0e-18 94.7 215 37.2
A02p11720 Brassica napus HOM05D002831 ORTHO05D004341 1.2e-17 94.4 199 34.7
Migut.F00296 Erythranthe guttata HOM05D002831 ORTHO05D004341 1.2e-17 94.4 212 40.1
THA.LOC104811959 Tarenaya hassleriana HOM05D002831 ORTHO05D004341 1.2e-17 94.4 267 31.5
Ah.13g069150 Amaranthus hybridus HOM05D002831 ORTHO05D004341 2.0e-17 93.6 190 37.4
TPR.G21560 Trifolium pratense HOM05D002831 ORTHO05D004341 2.0e-17 93.6 209 46.9
Aa31LG3G8920 Aethionema arabicum HOM05D002831 ORTHO05D004341 7.6e-17 91.7 199 36.2
AT4G25690 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 1.7e-16 90.5 212 36.8
A01p16930 Brassica napus HOM05D002831 ORTHO05D004341 2.2e-16 90.1 197 36.5
vmacro09817 Vaccinium macrocarpon HOM05D002831 ORTHO05D004341 2.9e-16 89.7 141 50.4
AT5G52550 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 3.8e-16 89.4 199 35.7
Medtr1g100090 Medicago truncatula HOM05D002831 ORTHO05D004341 8.4e-16 88.2 132 64.4
Carub.0008s1268 Capsella rubella HOM05D002831 ORTHO05D004341 1.4e-15 87.4 196 35.2
Sp7g23730 Schrenkiella parvula HOM05D002831 ORTHO05D004341 1.4e-15 87.4 202 39.1
Migut.F01087 Erythranthe guttata HOM05D002831 ORTHO05D004341 2.4e-15 86.7 198 41.4
Zm00001eb229390 Zea mays HOM05D002831 ORTHO05D004341 3.2e-15 86.3 214 52.8
C01p21210 Brassica napus HOM05D002831 ORTHO05D004341 4.2e-15 85.9 197 36.5
SGA_v2.0_scaffold113G31691 Striga asiatica HOM05D002831 ORTHO05D008967 5.4e-15 85.5 212 41.0
BcaC06g32789 Brassica carinata HOM05D002831 ORTHO05D004341 7.1e-15 85.1 217 35.9
Os02g0104200 Oryza sativa ssp. japonica HOM05D002831 ORTHO05D004341 7.1e-15 85.1 206 49.0
AL8G27020 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 9.3e-15 84.7 199 35.7
BcaNung07307 Brassica carinata HOM05D002831 ORTHO05D004341 1.2e-14 84.3 214 34.6
CARHR233150 Cardamine hirsuta HOM05D002831 ORTHO05D004341 1.6e-14 84.0 214 36.4
Sc19g0001290 Simmondsia chinensis HOM05D002831 ORTHO05D004341 2.1e-14 83.6 210 38.1
BolC1t02049H Brassica oleracea HOM05D002831 ORTHO05D004341 3.5e-14 82.8 218 40.8
Lalb_Chr21g0305221 Lupinus albus HOM05D002831 ORTHO05D004341 7.9e-14 81.6 167 52.7
SGA_v2.0_scaffold60G21104 Striga asiatica HOM05D002831 ORTHO05D004341 1.0e-13 81.3 213 41.8
Nn1g08525 Nelumbo nucifera HOM05D002831 ORTHO05D004341 1.3e-13 80.9 103 47.6
unitig_37.g11969 Utricularia gibba HOM05D002831 ORTHO05D004341 3.0e-13 79.7 203 38.4
Thhalv10026278m.g Eutrema salsugineum HOM05D002831 ORTHO05D004341 5.1e-13 79.0 206 32.5
BcaC03g14518 Brassica carinata HOM05D002831 ORTHO05D004341 1.9e-12 77.0 120 37.5
BraA01t01648Z Brassica rapa HOM05D002831 ORTHO05D004341 2.5e-12 76.6 215 34.4
HPP92_022210 Vanilla planifolia HOM05D002831 ORTHO05D004341 2.5e-12 76.6 201 35.3
HPP92_022228 Vanilla planifolia HOM05D002831 ORTHO05D004341 3.3e-12 76.3 201 35.3
BcaB05g21966 Brassica carinata HOM05D002831 ORTHO05D004341 1.3e-11 74.3 196 35.7
ECA232G1618 Erigeron canadensis HOM05D002831 ORTHO05D004341 2.1e-11 73.6 225 42.7
HanXRQChr14g0462531 Helianthus annuus HOM05D002831 ORTHO05D004341 4.8e-11 72.4 221 48.4
SEGI_15574 Sequoiadendron giganteum HOM05D002831 ORTHO05D004341 6.2e-11 72.0 229 34.5
Os06g0106900 Oryza sativa ssp. japonica HOM05D002831 ORTHO05D004341 3.1e-10 69.7 105 72.4
Lsat_1_v5_gn_2_131301 Lactuca sativa HOM05D002831 ORTHO05D004341 1.5e-09 67.4 214 48.6
SGA_v2.0_scaffold10G05296 Striga asiatica HOM05D002831 ORTHO05D004341 2.0e-09 67.0 212 32.1
HPP92_008924 Vanilla planifolia HOM05D002831 ORTHO05D004341 7.6e-09 65.1 200 35.5
ECA238G2131 Erigeron canadensis HOM05D002831 ORTHO05D004341 1.3e-08 64.3 209 48.8
HPP92_022231 Vanilla planifolia HOM05D002831 ORTHO05D004341 1.7e-08 63.9 114 39.5
unitig_0.g2470 Utricularia gibba HOM05D002831 ORTHO05D004341 2.2e-08 63.5 194 30.4
BraA03t14689Z Brassica rapa HOM05D000048 ORTHO05D000445 6.4e-08 62.0 102 53.9
C07p54490 Brassica napus HOM05D000048 ORTHO05D000445 4.6e-06 55.8 103 40.8
BolC7t45934H Brassica oleracea HOM05D000048 ORTHO05D000445 4.6e-06 55.8 103 40.8


User provided reference genes

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