Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G3168 Fragaria x ananassa HOM05D007188 ORTHO05D009102 7.7e-65 250.4 129 100.0
FAN06G0953 Fragaria x ananassa HOM05D007188 ORTHO05D009102 2.0e-52 209.1 109 99.1
FAN06G2123 Fragaria x ananassa HOM05D007188 ORTHO05D009102 2.0e-52 209.1 109 99.1
FAN10G2630 Fragaria x ananassa HOM05D007188 ORTHO05D009102 2.0e-52 209.1 109 99.1
FvH4_7g18710 Fragaria vesca HOM05D007188 ORTHO05D009102 5.7e-52 207.6 109 98.2
FAN01G3175 Fragaria x ananassa HOM05D007188 ORTHO05D009102 1.2e-46 189.9 109 91.7
FAN03G0393 Fragaria x ananassa HOM05D007188 ORTHO05D009102 2.1e-46 189.1 109 91.7
RcHm_v2.0_Chr1g0362491 Rosa chinensis HOM05D007188 ORTHO05D009102 4.8e-43 177.9 110 89.1
MD01G1102700 Malus domestica HOM05D007188 ORTHO05D009102 1.8e-26 122.9 119 64.7
Prupe.2G208300 Prunus persica HOM05D007188 ORTHO05D009102 4.1e-26 121.7 114 61.4
Potri.008G034900 Populus trichocarpa HOM05D007188 ORTHO05D009102 8.6e-24 114.0 115 56.5
Sabra08G0023300 Salix brachista HOM05D007188 ORTHO05D009102 3.3e-23 112.1 114 55.3
Manes.07G133140 Manihot esculenta HOM05D007188 ORTHO05D009102 2.0e-20 102.8 119 52.1
QL08p054189 Quercus lobata HOM05D007188 ORTHO05D009102 1.7e-19 99.8 118 51.7
Haze_16743 Corylus avellana HOM05D007188 ORTHO05D009102 4.9e-19 98.2 117 49.6
CANSAT56G0643 Cannabis sativa HOM05D007188 ORTHO05D009102 2.4e-18 95.9 119 51.3
Dinv31237 Davidia involucrata HOM05D007188 ORTHO05D009102 2.0e-17 92.8 108 48.1
GSVIVG01016213001 Vitis vinifera HOM05D007188 ORTHO05D009102 2.7e-17 92.4 81 58.0
Cfa001805 Carpinus fangiana HOM05D007188 ORTHO05D009102 3.5e-17 92.0 116 47.4
Eucgr.G02872 Eucalyptus grandis HOM05D007188 ORTHO05D009102 1.0e-16 90.5 121 50.4
TAR623G0008 Trochodendron aralioides HOM05D007188 ORTHO05D009102 3.9e-16 88.6 101 55.4
Nn6g35269 Nelumbo nucifera HOM05D007188 ORTHO05D009102 1.5e-15 86.7 83 55.4
TWI38G2147 Tripterygium wilfordii HOM05D007188 ORTHO05D009102 1.5e-15 86.7 117 48.7
CiPaw.02G171800 Carya illinoinensis HOM05D007188 ORTHO05D009102 1.9e-15 86.3 90 52.2
ClCG05G021230 Citrullus lanatus HOM05D007188 ORTHO05D009102 2.5e-15 85.9 122 46.7
CSS0007320 Camellia sinensis var. sinensis HOM05D007188 ORTHO05D009102 4.3e-15 85.1 115 45.2
CSS0035829 Camellia sinensis var. sinensis HOM05D007188 ORTHO05D009102 4.3e-15 85.1 115 45.2
CDE09G0470 Ceratophyllum demersum HOM05D007188 ORTHO05D009102 4.3e-15 85.1 95 47.4
VMungo0720G2339 Vigna mungo HOM05D007188 ORTHO05D009102 4.3e-15 85.1 109 47.7
Duzib106G0123 Durio zibethinus HOM05D007188 ORTHO05D009102 7.3e-15 84.3 100 51.0
Thecc.10G085100 Theobroma cacao HOM05D007188 ORTHO05D009102 7.3e-15 84.3 101 52.5
Cc02_g10880 Coffea canephora HOM05D007188 ORTHO05D009102 2.1e-14 82.8 103 48.5
Actinidia38870 Actinidia chinensis HOM05D007188 ORTHO05D009102 4.7e-14 81.6 95 46.3
Aqoxy1G01136 Aquilegia oxysepala HOM05D007188 ORTHO05D009102 4.7e-14 81.6 100 48.0
Glyma.20G183500 Glycine max HOM05D007188 ORTHO05D009102 4.7e-14 81.6 108 47.2
Medtr1g094160 Medicago truncatula HOM05D007188 ORTHO05D009102 4.7e-14 81.6 106 48.1
PSO063G4012 Papaver somniferum HOM05D007188 ORTHO05D009102 4.7e-14 81.6 82 53.7
Phvul.007G099300 Phaseolus vulgaris HOM05D007188 ORTHO05D009102 4.7e-14 81.6 110 47.3
Sed0000210 Sechium edule HOM05D007188 ORTHO05D009102 4.7e-14 81.6 115 46.1
Atru.chr12.855 Acer truncatum HOM05D007188 ORTHO05D009102 8.0e-14 80.9 119 47.9
THA.LOC104826897 Tarenaya hassleriana HOM05D007188 ORTHO05D009102 1.1e-13 80.5 105 45.7
COL.COLO4_36178 Corchorus olitorius HOM05D007188 ORTHO05D009102 1.8e-13 79.7 89 55.1
Gohir.A05G293300 Gossypium hirsutum HOM05D007188 ORTHO05D009102 1.8e-13 79.7 116 46.6
Zm00001eb022660 Zea mays HOM05D007188 ORTHO05D009102 1.8e-13 79.7 56 64.3
Ca_10538_v3 Cicer arietinum L. HOM05D007188 ORTHO05D009102 2.3e-13 79.3 86 51.2
unitig_88.g27814 Utricularia gibba HOM05D007188 ORTHO05D009102 2.3e-13 79.3 74 50.0
Gorai.009G310600 Gossypium raimondii HOM05D007188 ORTHO05D009102 5.2e-13 78.2 115 47.0
CsaV3_5G036040 Cucumis sativus L. HOM05D007188 ORTHO05D009102 6.8e-13 77.8 115 44.3
Nitab4.5_0001760g0020 Nicotiana tabacum HOM05D007188 ORTHO05D009102 8.9e-13 77.4 92 46.7
SGA_v2.0_scaffold62G21381 Striga asiatica HOM05D007188 ORTHO05D009102 8.9e-13 77.4 81 50.6
Gohir.D05G294000 Gossypium hirsutum HOM05D007188 ORTHO05D009102 1.2e-12 77.0 115 47.8
TPR.G10293 Trifolium pratense HOM05D007188 ORTHO05D009102 1.5e-12 76.6 106 45.3
Lsat_1_v5_gn_8_20860 Lactuca sativa HOM05D007188 ORTHO05D009102 3.4e-12 75.5 90 46.7
Os10g0545100 Oryza sativa ssp. japonica HOM05D007188 ORTHO05D009102 4.4e-12 75.1 112 46.4
Nitab4.5_0000096g0330 Nicotiana tabacum HOM05D007188 ORTHO05D009102 5.8e-12 74.7 77 45.5
BcaC01g04184 Brassica carinata HOM05D007188 ORTHO05D009102 7.5e-12 74.3 101 44.6
BolC3t16687H Brassica oleracea HOM05D007188 ORTHO05D009102 7.5e-12 74.3 102 43.1
MELO3C012404.2 Cucumis melo HOM05D007188 ORTHO05D009102 9.8e-12 73.9 115 42.6
Solyc02g033060.3 Solanum lycopersicum HOM05D007188 ORTHO05D009102 9.8e-12 73.9 77 51.9
Solyc05g055550.3 Solanum lycopersicum HOM05D007188 ORTHO05D009102 9.8e-12 73.9 77 51.9
Sopen05g034000 Solanum pennellii HOM05D007188 ORTHO05D009102 9.8e-12 73.9 77 51.9
Lj5g0026151 Lotus japonicus HOM05D007188 ORTHO05D009102 1.7e-11 73.2 122 44.3
Migut.F01952 Erythranthe guttata HOM05D007188 ORTHO05D009102 2.2e-11 72.8 118 44.1
arahy.Tifrunner.gnm1.ann1.3RW2WH Arachis hypogaea HOM05D007188 ORTHO05D009102 2.9e-11 72.4 65 58.5
arahy.Tifrunner.gnm1.ann1.CRM3NE Arachis hypogaea HOM05D007188 ORTHO05D009102 2.9e-11 72.4 65 58.5
Psat6g181120 Pisum sativum HOM05D007188 ORTHO05D009102 2.9e-11 72.4 109 41.3
SalBow4G2327 Salvia bowleyana HOM05D007188 ORTHO05D009102 2.9e-11 72.4 78 50.0
Ah.06g188920 Amaranthus hybridus HOM05D006516 ORTHO05D008083 6.4e-11 71.2 97 43.3
A03p36520 Brassica napus HOM05D007188 ORTHO05D009102 8.3e-11 70.9 86 45.3
BraA03t12819Z Brassica rapa HOM05D007188 ORTHO05D009102 8.3e-11 70.9 86 45.3
HanXRQChr08g0218401 Helianthus annuus HOM05D007188 ORTHO05D009102 8.3e-11 70.9 87 44.8
C03p44120 Brassica napus HOM05D007188 ORTHO05D009102 1.1e-10 70.5 103 42.7
Aa31LG3G3010 Aethionema arabicum HOM05D007188 ORTHO05D009102 1.4e-10 70.1 101 40.6
AUR62014280 Chenopodium quinoa HOM05D007188 ORTHO05D009102 1.9e-10 69.7 117 45.3
Lalb_Chr21g0313651 Lupinus albus HOM05D007188 ORTHO05D009102 2.4e-10 69.3 58 56.9
Sc06g0002050 Simmondsia chinensis HOM05D007188 ORTHO05D009102 2.4e-10 69.3 55 61.8
Sp3g08680 Schrenkiella parvula HOM05D007188 ORTHO05D009102 4.1e-10 68.6 97 41.2
Hund14950 Selenicereus undatus HOM05D007188 ORTHO05D009102 4.1e-10 68.6 105 44.8
ECA233G0714 Erigeron canadensis HOM05D007188 ORTHO05D009102 7.0e-10 67.8 113 43.4
Peaxi162Scf00176g01519 Petunia axillaris HOM05D007188 ORTHO05D009102 1.6e-09 66.6 59 49.2
CAN.G694.38 Capsicum annuum HOM05D007188 ORTHO05D009102 2.7e-09 65.9 57 52.6
AT3G10405 Arabidopsis thaliana HOM05D007188 ORTHO05D009102 3.5e-09 65.5 79 45.6
PGSC0003DMG400023370 Solanum tuberosum HOM05D007188 ORTHO05D009102 3.5e-09 65.5 85 47.1
vmacro04839 Vaccinium macrocarpon HOM05D007188 ORTHO05D009102 1.0e-08 63.9 55 56.4
AL3G21760 Arabidopsis lyrata HOM05D007188 ORTHO05D009102 3.0e-08 62.4 60 50.0
Thhalv10021497m.g Eutrema salsugineum HOM05D007188 ORTHO05D009102 3.0e-08 62.4 121 36.4
Pp3c2_18450 Physcomitrium patens HOM05D007188 ORTHO05D009102 3.9e-08 62.0 61 50.8
Carub.0003s0959 Capsella rubella HOM05D007188 ORTHO05D009102 5.0e-08 61.6 102 37.3
Rhsim09G0148000 Rhododendron simsii HOM05D007188 ORTHO05D009102 5.0e-08 61.6 54 57.4
RhsimUnG0185400 Rhododendron simsii HOM05D007188 ORTHO05D009102 5.0e-08 61.6 54 57.4
CARHR084890 Cardamine hirsuta HOM05D007188 ORTHO05D009102 2.5e-07 59.3 103 38.8
Glyma.10G207400 Glycine max HOM05D007188 ORTHO05D009102 9.5e-07 57.4 109 39.4


User provided reference genes

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