Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G3159 Fragaria x ananassa HOM05D006270 ORTHO05D007755 7.4e-147 523.9 265 100.0
FAN10G0687 Fragaria x ananassa HOM05D006270 ORTHO05D007755 6.7e-140 500.7 266 96.2
FAN03G2743 Fragaria x ananassa HOM05D006270 ORTHO05D007755 3.3e-139 498.4 264 96.6
FAN01G1506 Fragaria x ananassa HOM05D006270 ORTHO05D007755 2.2e-138 495.7 263 96.2
FAN06G0691 Fragaria x ananassa HOM05D006270 ORTHO05D007755 1.1e-137 493.4 264 95.1
FAN06G0861 Fragaria x ananassa HOM05D006270 ORTHO05D007755 1.1e-137 493.4 264 95.1
RcHm_v2.0_Chr1g0380911 Rosa chinensis HOM05D006270 ORTHO05D007755 1.8e-132 476.1 280 88.2
FvH4_7g31720 Fragaria vesca HOM05D006270 ORTHO05D007755 5.5e-94 348.2 192 94.3
Glyma.08G240100 Glycine max HOM05D006270 ORTHO05D007755 3.1e-84 315.8 274 60.9
Glyma.12G002000 Glycine max HOM05D006270 ORTHO05D007755 4.0e-84 315.5 272 59.9
QL09p054436 Quercus lobata HOM05D006270 ORTHO05D007755 2.0e-83 313.2 216 71.8
QL09p054318 Quercus lobata HOM05D006270 ORTHO05D007755 3.4e-83 312.4 216 71.8
VMungo1127G1589 Vigna mungo HOM05D006270 ORTHO05D007755 3.2e-81 305.8 276 58.0
Lj3g0009409 Lotus japonicus HOM05D006270 ORTHO05D007755 4.6e-80 302.0 281 60.1
Rhsim12G0005700 Rhododendron simsii HOM05D006270 ORTHO05D007755 4.6e-80 302.0 231 69.7
Phvul.011G002300 Phaseolus vulgaris HOM05D006270 ORTHO05D007755 2.3e-79 299.7 196 70.4
Haze_18335 Corylus avellana HOM05D006270 ORTHO05D007755 8.6e-79 297.7 215 69.3
Dinv03143 Davidia involucrata HOM05D006270 ORTHO05D007755 8.6e-79 297.7 203 72.4
Cfa017859 Carpinus fangiana HOM05D006270 ORTHO05D007755 1.6e-77 293.5 215 67.9
Actinidia23030 Actinidia chinensis HOM05D006270 ORTHO05D007755 2.1e-77 293.1 250 61.6
Ciclev10021647m.g Citrus clementina HOM05D006270 ORTHO05D007755 3.1e-76 289.3 273 58.2
TAR628G1531 Trochodendron aralioides HOM05D006270 ORTHO05D007755 3.1e-76 289.3 219 69.4
GSVIVG01026015001 Vitis vinifera HOM05D006270 ORTHO05D007755 1.5e-75 287.0 230 65.7
arahy.Tifrunner.gnm1.ann1.WW5SAZ Arachis hypogaea HOM05D006270 ORTHO05D007755 9.8e-75 284.3 229 61.6
arahy.Tifrunner.gnm1.ann1.3FR1H5 Arachis hypogaea HOM05D006270 ORTHO05D007755 2.9e-74 282.7 229 61.6
vmacro00974 Vaccinium macrocarpon HOM05D006270 ORTHO05D007755 6.4e-74 281.6 240 64.6
Nitab4.5_0001579g0030 Nicotiana tabacum HOM05D006270 ORTHO05D007755 8.3e-74 281.2 245 60.8
CANSAT21G0664 Cannabis sativa HOM05D006270 ORTHO05D007755 2.4e-73 279.6 278 55.8
Nitab4.5_0000167g0160 Nicotiana tabacum HOM05D006270 ORTHO05D007755 2.4e-73 279.6 229 64.6
Thecc.03G315400 Theobroma cacao HOM05D006270 ORTHO05D007755 2.4e-73 279.6 205 67.3
Potri.005G054600 Populus trichocarpa HOM05D006270 ORTHO05D007755 4.1e-73 278.9 230 62.2
TPR.G27896 Trifolium pratense HOM05D006270 ORTHO05D007755 4.1e-73 278.9 197 67.0
Psat7g147160 Pisum sativum HOM05D006270 ORTHO05D007755 9.2e-73 277.7 240 59.6
Duzib205G0009 Durio zibethinus HOM05D006270 ORTHO05D007755 2.1e-72 276.6 273 56.0
Cc10_g11640 Coffea canephora HOM05D006270 ORTHO05D007755 2.7e-72 276.2 248 59.3
Gohir.D08G172100 Gossypium hirsutum HOM05D006270 ORTHO05D007755 3.5e-72 275.8 234 61.5
Gorai.004G179400 Gossypium raimondii HOM05D006270 ORTHO05D007755 3.5e-72 275.8 234 61.5
ECA232G4580 Erigeron canadensis HOM05D006270 ORTHO05D007755 6.0e-72 275.0 236 60.2
Gohir.A08G151000 Gossypium hirsutum HOM05D006270 ORTHO05D007755 7.8e-72 274.6 192 69.3
HanXRQChr05g0147941 Helianthus annuus HOM05D006270 ORTHO05D007755 1.7e-71 273.5 234 59.8
Lalb_Chr01g0000131 Lupinus albus HOM05D006270 ORTHO05D007755 1.5e-70 270.4 242 57.9
Manes.08G135800 Manihot esculenta HOM05D006270 ORTHO05D007755 1.5e-70 270.4 230 62.6
Atru.chr13.2329 Acer truncatum HOM05D006270 ORTHO05D007755 2.5e-70 269.6 284 53.5
MSTRG.25449 Avicennia marina HOM05D006270 ORTHO05D007755 2.5e-70 269.6 235 57.0
TWI59G0231 Tripterygium wilfordii HOM05D006270 ORTHO05D007755 2.5e-70 269.6 225 61.8
Migut.C01268 Erythranthe guttata HOM05D006270 ORTHO05D007755 7.3e-70 268.1 234 60.3
Lsat_1_v5_gn_0_7900 Lactuca sativa HOM05D006270 ORTHO05D007755 9.5e-70 267.7 227 59.9
Sabra05G0047500 Salix brachista HOM05D006270 ORTHO05D007755 1.2e-69 267.3 239 60.3
PGSC0003DMG400014297 Solanum tuberosum HOM05D006270 ORTHO05D007755 2.8e-69 266.2 227 61.2
SGA_v2.0_scaffold24G10562 Striga asiatica HOM05D006270 ORTHO05D007755 8.1e-69 264.6 239 57.3
PGR102G0747 Punica granatum HOM05D006270 ORTHO05D007755 1.4e-68 263.8 196 69.9
Prupe.2G311100 Prunus persica HOM05D006270 ORTHO05D007755 3.1e-68 262.7 216 67.1
Sopen03g004530 Solanum pennellii HOM05D006270 ORTHO05D007755 6.8e-68 261.5 230 60.0
DCAR_028408 Daucus carota HOM05D006270 ORTHO05D007755 2.6e-67 259.6 226 61.1
PSO170G6113 Papaver somniferum HOM05D006270 ORTHO05D007755 2.6e-67 259.6 201 66.2
Solyc03g025710.3 Solanum lycopersicum HOM05D006270 ORTHO05D007755 3.4e-67 259.2 228 60.5
CiPaw.16G073500 Carya illinoinensis HOM05D006270 ORTHO05D007755 4.4e-67 258.8 224 60.3
Aqoxy6G00085 Aquilegia oxysepala HOM05D006270 ORTHO05D007755 5.8e-67 258.5 204 65.7
Oeu032990.1 Olea europaea HOM05D006270 ORTHO05D007755 7.5e-67 258.1 195 65.1
CAN.G307.5 Capsicum annuum HOM05D006270 ORTHO05D007755 9.9e-67 257.7 226 58.0
AUR62023526 Chenopodium quinoa HOM05D006270 ORTHO05D007755 1.3e-66 257.3 210 62.9
Sc23g0001640 Simmondsia chinensis HOM05D006270 ORTHO05D007755 1.3e-66 257.3 270 54.4
SalBow7G0089 Salvia bowleyana HOM05D006270 ORTHO05D007755 1.7e-66 256.9 193 64.2
C06p35210 Brassica napus HOM05D006270 ORTHO05D007755 3.2e-65 252.7 228 58.3
PSO782G5577 Papaver somniferum HOM05D006270 ORTHO05D007755 5.4e-65 251.9 199 64.8
A07p30450 Brassica napus HOM05D006270 ORTHO05D007755 7.1e-65 251.5 197 64.0
Eucgr.F02983 Eucalyptus grandis HOM05D006270 ORTHO05D007755 7.1e-65 251.5 226 60.6
BraA07t30681Z Brassica rapa HOM05D006270 ORTHO05D007755 9.2e-65 251.1 197 64.0
Aa31LG4G10780 Aethionema arabicum HOM05D006270 ORTHO05D007755 1.2e-64 250.8 255 52.9
BcaB03g15641 Brassica carinata HOM05D006270 ORTHO05D007755 1.2e-64 250.8 197 64.0
BcaC08g45741 Brassica carinata HOM05D006270 ORTHO05D007755 2.1e-64 250.0 228 57.9
BolC6t38627H Brassica oleracea HOM05D006270 ORTHO05D007755 2.1e-64 250.0 228 57.9
ClCG09G010100 Citrullus lanatus HOM05D006270 ORTHO05D007755 2.1e-64 250.0 228 57.0
ATR1136G034 Amborella trichopoda HOM05D006270 ORTHO05D007755 6.0e-64 248.4 186 65.1
Sp5g27100 Schrenkiella parvula HOM05D006270 ORTHO05D007755 3.9e-63 245.7 196 62.8
CARHR064850 Cardamine hirsuta HOM05D006270 ORTHO05D007755 1.1e-62 244.2 228 56.1
Cpa.g.sc66.22 Carica papaya HOM05D006270 ORTHO05D007755 1.5e-62 243.8 239 55.6
CsaV3_7G024750 Cucumis sativus L. HOM05D006270 ORTHO05D007755 1.5e-62 243.8 229 55.0
Peaxi162Scf01013g00026 Petunia axillaris HOM05D006270 ORTHO05D007755 1.5e-62 243.8 207 56.5
AL2G31660 Arabidopsis lyrata HOM05D006270 ORTHO05D007755 1.9e-62 243.4 196 63.8
AT1G72030 Arabidopsis thaliana HOM05D006270 ORTHO05D007755 2.5e-62 243.0 196 63.8
Thhalv10019029m.g Eutrema salsugineum HOM05D006270 ORTHO05D007755 3.3e-62 242.7 228 57.0
Carub.0002s1881 Capsella rubella HOM05D006270 ORTHO05D007755 4.3e-62 242.3 227 57.7
EL10Ac1g00156 Beta vulgaris HOM05D006270 ORTHO05D007755 1.6e-61 240.4 206 58.7
THA.LOC104809733 Tarenaya hassleriana HOM05D006270 ORTHO05D007755 1.6e-61 240.4 196 61.7
Os07g0264800 Oryza sativa ssp. japonica HOM05D006270 ORTHO05D007755 6.8e-60 235.0 216 56.9
Sed0023542 Sechium edule HOM05D006270 ORTHO05D007755 8.9e-60 234.6 203 58.1
Nitab4.5_0000167g0150 Nicotiana tabacum HOM05D006270 ORTHO05D007755 1.3e-58 230.7 231 55.8
COL.COLO4_16875 Corchorus olitorius HOM05D006270 ORTHO05D007755 1.7e-58 230.3 156 71.2
Nitab4.5_0001579g0080 Nicotiana tabacum HOM05D006270 ORTHO05D007755 3.8e-58 229.2 244 53.3
unitig_8.g2905 Utricularia gibba HOM05D006270 ORTHO05D007755 7.1e-57 224.9 194 58.2
Nn5g27482 Nelumbo nucifera HOM05D006270 ORTHO05D007755 1.2e-56 224.2 212 58.0
SEGI_40158 Sequoiadendron giganteum HOM05D006270 ORTHO05D007755 2.3e-55 219.9 200 55.0
HPP92_002765 Vanilla planifolia HOM05D006270 ORTHO05D007755 6.6e-55 218.4 191 58.1
SMO352G0005 Selaginella moellendorffii HOM05D006270 ORTHO05D007755 2.5e-54 216.5 196 53.1
Ca_19683_v3 Cicer arietinum L. HOM05D006270 ORTHO05D007755 5.3e-52 208.8 144 67.4
PGSC0003DMG400034528 Solanum tuberosum HOM05D006270 ORTHO05D007755 6.9e-52 208.4 188 54.3
Sopen11g010160 Solanum pennellii HOM05D006270 ORTHO05D007755 2.0e-51 206.8 185 53.0
Pp3c3_19510 Physcomitrium patens HOM05D006270 ORTHO05D007755 9.9e-51 204.5 193 54.9
PGSC0003DMG400007305 Solanum tuberosum HOM05D006270 ORTHO05D007755 2.2e-50 203.4 203 53.2
Lj7A621T38 Lonicera japonica HOM05D006270 ORTHO05D007755 1.6e-48 197.2 146 63.7
CAN.G1280.16 Capsicum annuum HOM05D006270 ORTHO05D007755 3.5e-48 196.1 217 50.7
CSS0031567 Camellia sinensis var. sinensis HOM05D006270 ORTHO05D007755 1.3e-39 167.5 173 55.5
Mapoly0148s0033 Marchantia polymorpha HOM05D006270 ORTHO05D007755 1.8e-39 167.2 181 47.0
MD01G1220200 Malus domestica HOM05D006270 ORTHO05D007755 6.2e-37 158.7 142 66.2
CDE04G3476 Ceratophyllum demersum HOM05D006270 ORTHO05D007755 5.3e-36 155.6 184 46.7
AUR62004580 Chenopodium quinoa HOM05D006270 ORTHO05D007755 3.4e-35 152.9 110 68.2
MELO3C024085.2 Cucumis melo HOM05D006270 ORTHO05D007755 1.2e-32 144.4 165 47.3
Zm00001eb304740 Zea mays HOM05D006270 ORTHO05D007755 2.1e-32 143.7 140 56.4
MBI06_g06704_MAGBIO Magnolia biondii HOM05D006270 ORTHO05D007755 4.6e-32 142.5 151 53.0
SEGI_10565 Sequoiadendron giganteum HOM05D006270 ORTHO05D007755 6.7e-31 138.7 133 56.4
SEGI_32338 Sequoiadendron giganteum HOM05D006270 ORTHO05D007755 3.1e-28 129.8 117 58.1
Solyc11g020000.1 Solanum lycopersicum HOM05D006270 ORTHO05D007755 3.4e-27 126.3 185 37.8
AagrBONN_evm.TU.Sc2ySwM_228.4762 Anthoceros agrestis HOM05D006270 ORTHO05D007755 5.0e-26 122.5 142 51.4
Ah.05g178770 Amaranthus hybridus HOM05D006270 ORTHO05D007755 7.1e-25 118.6 140 47.1
Nitab4.5_0000329g0020 Nicotiana tabacum HOM05D006270 ORTHO05D007755 7.9e-24 115.2 129 51.2
CBR_g50390 Chara braunii HOM05D000019 ORTHO05D000002 6.3e-21 105.5 110 44.5
GSVIVG01026021001 Vitis vinifera HOM05D000026 ORTHO05D001436 1.1e-20 104.8 70 71.4
Cre06.g269100 Chlamydomonas reinhardtii HOM05D006270 ORTHO05D007755 4.1e-20 102.8 216 32.4
SEGI_00952 Sequoiadendron giganteum HOM05D006270 ORTHO05D007755 4.1e-20 102.8 113 52.2
SEGI_26224 Sequoiadendron giganteum HOM05D006270 ORTHO05D007755 2.3e-15 87.0 97 53.6
MCO03G108 Micromonas commoda HOM05D006270 ORTHO05D007755 7.7e-11 72.0 181 33.1
GSVIVG01026018001 Vitis vinifera HOM05D006270 ORTHO05D007755 1.7e-10 70.9 46 69.6
MCO16G519 Micromonas commoda HOM05D006270 ORTHO05D007755 3.9e-07 59.7 87 35.6
Cre16.g662650 Chlamydomonas reinhardtii HOM05D002510 ORTHO05D006928 2.6e-06 57.0 127 32.3
SEGI_16930 Sequoiadendron giganteum HOM05D005733 ORTHO05D007442 4.4e-06 56.2 78 30.8
MCO13G231 Micromonas commoda HOM05D005733 ORTHO05D006928 7.4e-06 55.5 81 34.6


User provided reference genes

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