Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G3104 Fragaria x ananassa HOM05D003652 ORTHO05D004190 3.8e-57 224.6 110 100.0
FvH4_7g05280 Fragaria vesca HOM05D003652 ORTHO05D004190 2.7e-34 148.7 75 97.3
FAN01G0918 Fragaria x ananassa HOM05D003652 ORTHO05D004190 2.7e-34 148.7 75 97.3
FAN03G2156 Fragaria x ananassa HOM05D003652 ORTHO05D004190 2.7e-34 148.7 75 97.3
FAN06G2696 Fragaria x ananassa HOM05D003652 ORTHO05D004190 2.7e-34 148.7 75 97.3
RcHm_v2.0_Chr1g0332001 Rosa chinensis HOM05D003652 ORTHO05D004190 3.3e-32 141.7 75 92.0
CiPaw.07G160100 Carya illinoinensis HOM05D003652 ORTHO05D004190 5.2e-30 134.4 87 75.9
Prupe.8G058700 Prunus persica HOM05D003652 ORTHO05D004190 1.2e-29 133.3 87 77.0
MD07G1075500 Malus domestica HOM05D003652 ORTHO05D004190 2.0e-29 132.5 75 84.0
QL02p033637 Quercus lobata HOM05D003652 ORTHO05D004190 7.5e-29 130.6 75 82.7
Sabra02G0054200 Salix brachista HOM05D003652 ORTHO05D004190 2.2e-28 129.0 87 74.7
Haze_22519 Corylus avellana HOM05D003652 ORTHO05D004190 3.7e-28 128.3 75 80.0
Potri.002G068900 Populus trichocarpa HOM05D003652 ORTHO05D004190 3.7e-28 128.3 87 74.7
Sc02g0004140 Simmondsia chinensis HOM05D003652 ORTHO05D004190 3.7e-28 128.3 75 81.3
Cfa013845 Carpinus fangiana HOM05D003652 ORTHO05D004190 4.9e-28 127.9 75 80.0
Actinidia10649 Actinidia chinensis HOM05D003652 ORTHO05D004190 6.4e-28 127.5 87 73.6
EL10Ac1g01536 Beta vulgaris HOM05D003652 ORTHO05D004190 1.1e-27 126.7 87 71.3
CSS0021982 Camellia sinensis var. sinensis HOM05D003652 ORTHO05D004190 1.1e-27 126.7 87 71.3
Manes.02G178800 Manihot esculenta HOM05D003652 ORTHO05D004190 1.4e-27 126.3 75 81.3
vmacro18508 Vaccinium macrocarpon HOM05D003652 ORTHO05D004190 1.4e-27 126.3 87 72.4
Potri.005G191500 Populus trichocarpa HOM05D003652 ORTHO05D004190 1.9e-27 125.9 87 72.4
Dinv41091 Davidia involucrata HOM05D003652 ORTHO05D004190 3.2e-27 125.2 87 71.3
Lalb_Chr21g0305741 Lupinus albus HOM05D003652 ORTHO05D004190 7.1e-27 124.0 87 67.8
Sed0009622 Sechium edule HOM05D003652 ORTHO05D004190 7.1e-27 124.0 75 80.0
Rhsim08G0021800 Rhododendron simsii HOM05D003652 ORTHO05D004190 9.2e-27 123.6 87 70.1
TWI34G0668 Tripterygium wilfordii HOM05D003652 ORTHO05D004190 9.2e-27 123.6 87 72.4
Duzib116G0402 Durio zibethinus HOM05D003652 ORTHO05D004190 1.6e-26 122.9 87 69.0
MD02G1241400 Malus domestica HOM05D003652 ORTHO05D004190 1.6e-26 122.9 75 78.7
Atru.chr13.2145 Acer truncatum HOM05D003652 ORTHO05D004190 2.1e-26 122.5 87 71.3
ClCG09G010020 Citrullus lanatus HOM05D003652 ORTHO05D004190 2.7e-26 122.1 72 81.9
Lj5g0007913 Lotus japonicus HOM05D003652 ORTHO05D004190 2.7e-26 122.1 87 66.7
PGR042G2936 Punica granatum HOM05D003652 ORTHO05D004190 2.7e-26 122.1 87 71.3
Medtr1g096550 Medicago truncatula HOM05D003652 ORTHO05D004190 3.5e-26 121.7 75 76.0
Rhsim10G0066500 Rhododendron simsii HOM05D003652 ORTHO05D004190 3.5e-26 121.7 87 69.0
Ca_10620_v3 Cicer arietinum L. HOM05D003652 ORTHO05D004190 4.6e-26 121.3 75 74.7
TPR.G8817 Trifolium pratense HOM05D003652 ORTHO05D004190 4.6e-26 121.3 75 74.7
AUR62013575 Chenopodium quinoa HOM05D003652 ORTHO05D004190 6.0e-26 120.9 87 67.8
GSVIVG01034519001 Vitis vinifera HOM05D003652 ORTHO05D004190 6.0e-26 120.9 75 78.7
AUR62026715 Chenopodium quinoa HOM05D003652 ORTHO05D004190 7.8e-26 120.6 87 67.8
Dinv25854 Davidia involucrata HOM05D003652 ORTHO05D004190 7.8e-26 120.6 87 69.0
CsaV3_7G024680 Cucumis sativus L. HOM05D003652 ORTHO05D004190 1.0e-25 120.2 72 80.6
Cpa.g.sc21.193 Carica papaya HOM05D003652 ORTHO05D004190 1.3e-25 119.8 75 77.3
MELO3C024093.2 Cucumis melo HOM05D003652 ORTHO05D004190 1.3e-25 119.8 72 80.6
Eucgr.F04242 Eucalyptus grandis HOM05D003652 ORTHO05D004190 1.3e-25 119.8 87 70.1
Nn5g28722 Nelumbo nucifera HOM05D003652 ORTHO05D004190 1.7e-25 119.4 87 69.0
PSO210G4735 Papaver somniferum HOM05D003652 ORTHO05D004190 1.7e-25 119.4 87 70.1
PSO238G0028 Papaver somniferum HOM05D003652 ORTHO05D004190 1.7e-25 119.4 87 70.1
TWI60G1418 Tripterygium wilfordii HOM05D003652 ORTHO05D004190 1.7e-25 119.4 87 71.3
TAR376G0660 Trochodendron aralioides HOM05D003652 ORTHO05D004190 1.7e-25 119.4 75 77.3
Glyma.10G217200 Glycine max HOM05D003652 ORTHO05D004190 2.3e-25 119.0 87 66.7
Gohir.A02G064300 Gossypium hirsutum HOM05D003652 ORTHO05D004190 2.3e-25 119.0 75 77.3
Gohir.D02G070200 Gossypium hirsutum HOM05D003652 ORTHO05D004190 2.3e-25 119.0 75 77.3
Gorai.005G079300 Gossypium raimondii HOM05D003652 ORTHO05D004190 2.3e-25 119.0 75 77.3
Lj7C372G9 Lonicera japonica HOM05D003652 ORTHO05D004190 2.3e-25 119.0 75 74.7
TAR628G0150 Trochodendron aralioides HOM05D003652 ORTHO05D004190 2.3e-25 119.0 87 67.8
Oeu011939.2 Olea europaea HOM05D003652 ORTHO05D004190 3.0e-25 118.6 76 75.0
Cc10_g14750 Coffea canephora HOM05D003652 ORTHO05D004190 3.9e-25 118.2 75 74.7
Glyma.20G174900 Glycine max HOM05D003652 ORTHO05D004190 3.9e-25 118.2 87 65.5
Hma1.2p1_0105F.1_g050770 Hydrangea macrophylla HOM05D003652 ORTHO05D004190 3.9e-25 118.2 75 76.0
Actinidia29525 Actinidia chinensis HOM05D003652 ORTHO05D004190 5.1e-25 117.9 87 69.0
CANSAT25G1176 Cannabis sativa HOM05D003652 ORTHO05D004190 5.1e-25 117.9 87 67.8
Phvul.007G088900 Phaseolus vulgaris HOM05D003652 ORTHO05D004190 6.6e-25 117.5 75 72.0
Oeu014495.2 Olea europaea HOM05D003652 ORTHO05D004190 8.6e-25 117.1 75 76.0
Psat6g186720 Pisum sativum HOM05D003652 ORTHO05D004190 1.1e-24 116.7 75 72.0
Aqoxy5G02100 Aquilegia oxysepala HOM05D003652 ORTHO05D004190 1.5e-24 116.3 75 74.7
COL.COLO4_37835 Corchorus olitorius HOM05D003652 ORTHO05D004190 1.5e-24 116.3 87 65.5
MSTRG.22372 Avicennia marina HOM05D003652 ORTHO05D004190 2.5e-24 115.5 75 76.0
THA.LOC104812038 Tarenaya hassleriana HOM05D003652 ORTHO05D004190 3.3e-24 115.2 88 67.0
Ciclev10000108m.g Citrus clementina HOM05D003652 ORTHO05D004190 4.3e-24 114.8 87 66.7
CAN.G268.10 Capsicum annuum HOM05D003652 ORTHO05D004190 1.2e-23 113.2 75 72.0
Migut.N03225 Erythranthe guttata HOM05D003652 ORTHO05D004190 1.2e-23 113.2 75 74.7
SalBow6G6910 Salvia bowleyana HOM05D003652 ORTHO05D004190 1.6e-23 112.8 75 74.7
PGSC0003DMG400024108 Solanum tuberosum HOM05D003652 ORTHO05D004190 1.6e-23 112.8 75 70.7
VMungo0720G3010 Vigna mungo HOM05D003652 ORTHO05D004190 1.6e-23 112.8 87 64.4
Hund26699 Selenicereus undatus HOM05D003652 ORTHO05D004190 2.1e-23 112.5 72 75.0
Nitab4.5_0008106g0010 Nicotiana tabacum HOM05D003652 ORTHO05D004190 2.8e-23 112.1 87 63.2
Peaxi162Scf01294g00125 Petunia axillaris HOM05D003652 ORTHO05D004190 2.8e-23 112.1 87 64.4
Solyc04g071350.3 Solanum lycopersicum HOM05D003652 ORTHO05D004190 2.8e-23 112.1 75 69.3
Sopen04g027310 Solanum pennellii HOM05D003652 ORTHO05D004190 2.8e-23 112.1 75 69.3
Aa31LG7G5310 Aethionema arabicum HOM05D003652 ORTHO05D004190 4.7e-23 111.3 75 69.3
ATR0772G136 Amborella trichopoda HOM05D003652 ORTHO05D004190 4.7e-23 111.3 75 74.7
SGA_v2.0_scaffold19G08667 Striga asiatica HOM05D003652 ORTHO05D004190 4.7e-23 111.3 75 73.3
Nitab4.5_0005705g0020 Nicotiana tabacum HOM05D003652 ORTHO05D004190 8.1e-23 110.5 75 70.7
Nn1g06100 Nelumbo nucifera HOM05D003652 ORTHO05D004190 1.1e-22 110.2 87 62.1
Nitab4.5_0000140g0050 Nicotiana tabacum HOM05D003652 ORTHO05D004190 1.1e-22 110.2 87 62.1
Peaxi162Scf00765g00049 Petunia axillaris HOM05D003652 ORTHO05D004190 1.1e-22 110.2 75 70.7
Nitab4.5_0005926g0010 Nicotiana tabacum HOM05D003652 ORTHO05D004190 1.8e-22 109.4 75 69.3
SGA_v2.0_scaffold25G11172 Striga asiatica HOM05D003652 ORTHO05D004190 2.4e-22 109.0 75 70.7
Carub.0002s2373 Capsella rubella HOM05D003652 ORTHO05D004190 3.1e-22 108.6 75 68.0
Zm00001eb422350 Zea mays HOM05D003652 ORTHO05D004190 3.1e-22 108.6 73 68.5
arahy.Tifrunner.gnm1.ann1.2W1LLW Arachis hypogaea HOM05D003652 ORTHO05D004190 5.2e-22 107.8 75 68.0
arahy.Tifrunner.gnm1.ann1.8KD3C5 Arachis hypogaea HOM05D003652 ORTHO05D004190 5.2e-22 107.8 75 68.0
Os04g0421900 Oryza sativa ssp. japonica HOM05D003652 ORTHO05D004190 6.8e-22 107.5 75 69.3
DCAR_014431 Daucus carota HOM05D003652 ORTHO05D004190 8.9e-22 107.1 65 78.5
MBI09_g47603_MAGBIO Magnolia biondii HOM05D003652 ORTHO05D004190 1.2e-21 106.7 77 67.5
Zm00001eb083200 Zea mays HOM05D003652 ORTHO05D004190 1.2e-21 106.7 73 67.1
CAN.G89.17 Capsicum annuum HOM05D003652 ORTHO05D004190 1.5e-21 106.3 87 60.9
AL2G36970 Arabidopsis lyrata HOM05D003652 ORTHO05D004190 2.0e-21 105.9 75 66.7
Thhalv10006745m.g Eutrema salsugineum HOM05D003652 ORTHO05D004190 3.4e-21 105.1 77 66.2
ECA236G0544 Erigeron canadensis HOM05D003652 ORTHO05D004190 7.6e-21 104.0 75 66.7
Sabra05G0146300 Salix brachista HOM05D003652 ORTHO05D004190 7.6e-21 104.0 87 66.7
Carub.0001s2061 Capsella rubella HOM05D003652 ORTHO05D004190 1.7e-20 102.8 77 66.2
Solyc12g056520.3 Solanum lycopersicum HOM05D003652 ORTHO05D004190 2.2e-20 102.4 87 60.9
Sopen12g029110 Solanum pennellii HOM05D003652 ORTHO05D004190 2.2e-20 102.4 87 60.9
C02p34110 Brassica napus HOM05D003652 ORTHO05D004190 3.8e-20 101.7 76 67.1
HanXRQChr11g0339321 Helianthus annuus HOM05D003652 ORTHO05D004190 3.8e-20 101.7 75 64.0
AL1G34230 Arabidopsis lyrata HOM05D003652 ORTHO05D004190 4.9e-20 101.3 75 66.7
AT1G76850 Arabidopsis thaliana HOM05D003652 ORTHO05D004190 8.4e-20 100.5 75 64.0
BcaC03g15706 Brassica carinata HOM05D003652 ORTHO05D004190 8.4e-20 100.5 76 65.8
BolC2t09427H Brassica oleracea HOM05D003652 ORTHO05D004190 8.4e-20 100.5 76 65.8
CARHR021630 Cardamine hirsuta HOM05D003652 ORTHO05D004190 2.4e-19 99.0 78 62.8
BcaB02g07077 Brassica carinata HOM05D003652 ORTHO05D004190 4.1e-19 98.2 76 64.5
BcaC08g45509 Brassica carinata HOM05D003652 ORTHO05D004190 4.1e-19 98.2 76 64.5
A07p28340 Brassica napus HOM05D003652 ORTHO05D004190 4.1e-19 98.2 76 64.5
C06p31780 Brassica napus HOM05D003652 ORTHO05D004190 4.1e-19 98.2 76 64.5
BolC6t38307H Brassica oleracea HOM05D003652 ORTHO05D004190 4.1e-19 98.2 76 64.5
BraA07t30471Z Brassica rapa HOM05D003652 ORTHO05D004190 4.1e-19 98.2 76 64.5
MBI09_g20113_MAGBIO Magnolia biondii HOM05D003652 ORTHO05D004190 4.1e-19 98.2 77 64.9
AT1G21170 Arabidopsis thaliana HOM05D003652 ORTHO05D004190 5.4e-19 97.8 77 63.6
CDE06G1552 Ceratophyllum demersum HOM05D003652 ORTHO05D004190 7.1e-19 97.4 75 61.3
Lsat_1_v5_gn_7_71861 Lactuca sativa HOM05D003652 ORTHO05D004190 7.1e-19 97.4 75 64.0
Aa31LG4G6890 Aethionema arabicum HOM05D003652 ORTHO05D004190 9.2e-19 97.1 75 61.3
Sp1g18810 Schrenkiella parvula HOM05D003652 ORTHO05D004190 1.2e-18 96.7 73 65.8
SEGI_34715 Sequoiadendron giganteum HOM05D003652 ORTHO05D004190 2.1e-18 95.9 72 65.3
Sp5g31980 Schrenkiella parvula HOM05D003652 ORTHO05D004190 3.5e-18 95.1 76 61.8
unitig_744.g24568 Utricularia gibba HOM05D003652 ORTHO05D004190 4.6e-18 94.7 75 64.0
CARHR070360 Cardamine hirsuta HOM05D003652 ORTHO05D004190 1.3e-17 93.2 76 60.5
CDE08G0217 Ceratophyllum demersum HOM05D003652 ORTHO05D004190 1.9e-16 89.4 75 58.7
SHI18207 Sapria himalayana HOM05D003652 ORTHO05D004190 1.6e-15 86.3 73 60.3
ECA247G2571 Erigeron canadensis HOM05D003652 ORTHO05D004190 3.6e-15 85.1 69 62.3
HanXRQChr02g0045411 Helianthus annuus HOM05D003652 ORTHO05D004190 3.6e-15 85.1 74 56.8
HanXRQChr06g0174441 Helianthus annuus HOM05D003652 ORTHO05D004190 3.6e-15 85.1 74 56.8
Lalb_Chr06g0162011 Lupinus albus HOM05D003652 ORTHO05D004190 8.1e-15 84.0 63 66.7
AagrBONN_evm.TU.Sc2ySwM_344.5035 Anthoceros agrestis HOM05D003652 ORTHO05D004190 3.0e-09 65.5 67 49.3
CBR_g18955 Chara braunii HOM05D000019 ORTHO05D000048 7.3e-08 60.8 68 50.0
Mapoly0098s0037 Marchantia polymorpha HOM05D003652 ORTHO05D004190 7.3e-08 60.8 71 47.9
Pp3c11_13110 Physcomitrium patens HOM05D003652 ORTHO05D004190 9.6e-08 60.5 73 39.7
Pp3c1_7430 Physcomitrium patens HOM05D003652 ORTHO05D004190 1.6e-07 59.7 72 38.9
MBI09_g18624_MAGBIO Magnolia biondii HOM05D003652 ORTHO05D004190 8.1e-07 57.4 77 42.9
Pp3c5_4060 Physcomitrium patens HOM05D003652 ORTHO05D004190 8.1e-07 57.4 56 46.4
Pp3c24_1100 Physcomitrium patens HOM05D003652 ORTHO05D004190 1.8e-06 56.2 55 47.3
A06p17210 Brassica napus HOM05D003652 ORTHO05D004190 3.1e-06 55.5 76 39.5


User provided reference genes

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