Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G3090 Fragaria x ananassa HOM05D005304 ORTHO05D004438 1.6e-61 239.2 117 100.0
FvH4_7g06790 Fragaria vesca HOM05D005304 ORTHO05D004438 6.1e-61 237.3 117 99.1
FAN06G1004 Fragaria x ananassa HOM05D005304 ORTHO05D004438 6.1e-61 237.3 117 99.1
FAN03G1417 Fragaria x ananassa HOM05D005304 ORTHO05D004438 3.7e-58 228.0 117 97.4
FAN01G2164 Fragaria x ananassa HOM05D005304 ORTHO05D004438 5.3e-57 224.2 117 96.6
RcHm_v2.0_Chr1g0336411 Rosa chinensis HOM05D005304 ORTHO05D004438 1.2e-53 213.0 117 92.3
FAN10G0320 Fragaria x ananassa HOM05D005304 ORTHO05D004438 5.7e-51 204.1 102 99.0
FAN02G4580 Fragaria x ananassa HOM05D005304 ORTHO05D004438 2.2e-50 202.2 104 97.1
FAN12G4274 Fragaria x ananassa HOM05D005304 ORTHO05D004438 2.4e-49 198.7 104 95.2
Prupe.2G095100 Prunus persica HOM05D005304 ORTHO05D004438 1.7e-23 112.8 116 59.5
Duzib128G0830 Durio zibethinus HOM05D005304 ORTHO05D004438 1.2e-19 100.1 115 49.6
Potri.008G029600 Populus trichocarpa HOM05D005304 ORTHO05D004438 2.0e-19 99.4 114 49.1
COL.COLO4_32872 Corchorus olitorius HOM05D005304 ORTHO05D004438 3.4e-19 98.6 128 43.8
Potri.010G231600 Populus trichocarpa HOM05D005304 ORTHO05D004438 7.5e-19 97.4 120 48.3
Sabra08G0019800 Salix brachista HOM05D005304 ORTHO05D004438 7.5e-19 97.4 120 49.2
Duzib114G0655 Durio zibethinus HOM05D005304 ORTHO05D004438 9.8e-19 97.1 111 50.5
Manes.07G093500 Manihot esculenta HOM05D005304 ORTHO05D004438 1.3e-18 96.7 116 48.3
Rhsim03G0110900 Rhododendron simsii HOM05D005304 ORTHO05D004438 2.2e-18 95.9 105 49.5
Duzib128G0918 Durio zibethinus HOM05D005304 ORTHO05D004438 6.4e-18 94.4 115 44.3
Manes.10G053200 Manihot esculenta HOM05D005304 ORTHO05D004438 8.3e-18 94.0 116 49.1
Thecc.10G090600 Theobroma cacao HOM05D005304 ORTHO05D004438 4.1e-17 91.7 114 47.4
CANSAT56G0274 Cannabis sativa HOM05D005304 ORTHO05D004438 1.6e-16 89.7 171 38.0
PGR044G1405 Punica granatum HOM05D005304 ORTHO05D004438 7.8e-16 87.4 125 45.6
CiPaw.01G264700 Carya illinoinensis HOM05D005304 ORTHO05D004438 1.0e-15 87.0 129 42.6
QL03p021677 Quercus lobata HOM05D005304 ORTHO05D004438 1.7e-15 86.3 74 55.4
Gohir.A05G393600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 2.3e-15 85.9 100 49.0
Gorai.012G025400 Gossypium raimondii HOM05D005304 ORTHO05D004438 2.3e-15 85.9 100 49.0
Gohir.D04G021300 Gossypium hirsutum HOM05D005304 ORTHO05D004438 3.0e-15 85.5 100 49.0
Phvul.007G141600 Phaseolus vulgaris HOM05D005304 ORTHO05D004438 3.0e-15 85.5 71 62.0
ClCG05G021460 Citrullus lanatus HOM05D005304 ORTHO05D004438 5.1e-15 84.7 107 45.8
Sabra10G0179600 Salix brachista HOM05D005304 ORTHO05D004438 5.1e-15 84.7 107 47.7
Migut.F01894 Erythranthe guttata HOM05D005304 ORTHO05D004438 6.6e-15 84.3 99 51.5
Gohir.A01G128800 Gossypium hirsutum HOM05D005304 ORTHO05D004438 6.6e-15 84.3 113 45.1
Gohir.D01G118400 Gossypium hirsutum HOM05D005304 ORTHO05D004438 6.6e-15 84.3 113 45.1
Gorai.002G144400 Gossypium raimondii HOM05D005304 ORTHO05D004438 6.6e-15 84.3 113 45.1
Manes.10G053300 Manihot esculenta HOM05D005304 ORTHO05D004438 6.6e-15 84.3 121 45.5
Oeu032435.1 Olea europaea HOM05D005304 ORTHO05D004438 8.6e-15 84.0 100 47.0
VMungo0720G0262 Vigna mungo HOM05D005304 ORTHO05D004438 1.1e-14 83.6 83 55.4
CSS0003867 Camellia sinensis var. sinensis HOM05D017072 ORTHO05D004438 1.5e-14 83.2 103 46.6
QL03p011649 Quercus lobata HOM05D005304 ORTHO05D004438 1.5e-14 83.2 74 54.1
QL08p052941 Quercus lobata HOM05D005304 ORTHO05D004438 1.9e-14 82.8 74 56.8
Lsat_1_v5_gn_8_22700 Lactuca sativa HOM05D005304 ORTHO05D004438 3.3e-14 82.0 112 43.8
Cpa.g.sc128.74 Carica papaya HOM05D005304 ORTHO05D004438 4.3e-14 81.6 102 50.0
Nn6g35176 Nelumbo nucifera HOM05D005304 ORTHO05D004438 4.3e-14 81.6 100 50.0
Ciclev10033091m.g Citrus clementina HOM05D005304 ORTHO05D004438 5.6e-14 81.3 118 44.1
Eucgr.J01033 Eucalyptus grandis HOM05D005304 ORTHO05D004438 5.6e-14 81.3 87 51.7
Glyma.10G199500 Glycine max HOM05D005304 ORTHO05D004438 5.6e-14 81.3 70 61.4
Lalb_Chr02g0151151 Lupinus albus HOM05D005304 ORTHO05D004438 5.6e-14 81.3 96 50.0
Potri.010G231700 Populus trichocarpa HOM05D005304 ORTHO05D004438 5.6e-14 81.3 95 46.3
Cfa001771 Carpinus fangiana HOM05D005304 ORTHO05D004438 9.5e-14 80.5 75 56.0
CiPaw.02G169800 Carya illinoinensis HOM05D005304 ORTHO05D004438 9.5e-14 80.5 117 41.9
Glyma.20G190800 Glycine max HOM05D005304 ORTHO05D004438 9.5e-14 80.5 105 47.6
Lalb_Chr06g0170051 Lupinus albus HOM05D005304 ORTHO05D004438 9.5e-14 80.5 78 55.1
Ca_10460_v3 Cicer arietinum L. HOM05D005304 ORTHO05D004438 2.1e-13 79.3 70 58.6
Oeu059829.1 Olea europaea HOM05D005304 ORTHO05D004438 2.8e-13 79.0 100 45.0
TAR636G3524 Trochodendron aralioides HOM05D005304 ORTHO05D004438 3.6e-13 78.6 120 40.0
TPR.G37843 Trifolium pratense HOM05D005304 ORTHO05D004438 4.7e-13 78.2 98 51.0
Cc02_g10500 Coffea canephora HOM05D005304 ORTHO05D004438 6.2e-13 77.8 126 40.5
MELO3C019852.2 Cucumis melo HOM05D005304 ORTHO05D004438 6.2e-13 77.8 94 45.7
CsaV3_2G032750 Cucumis sativus L. HOM05D005304 ORTHO05D004438 6.2e-13 77.8 94 45.7
MELO3C012381.2 Cucumis melo HOM05D005304 ORTHO05D004438 8.1e-13 77.4 115 41.7
Lj5g0009089 Lotus japonicus HOM05D005304 ORTHO05D004438 8.1e-13 77.4 130 40.8
Medtr1g090837 Medicago truncatula HOM05D005304 ORTHO05D004438 1.1e-12 77.0 70 58.6
SHI54636 Sapria himalayana HOM05D005304 ORTHO05D004438 1.1e-12 77.0 89 44.9
Haze_16785 Corylus avellana HOM05D005304 ORTHO05D004438 1.8e-12 76.3 82 51.2
CsaV3_5G035790 Cucumis sativus L. HOM05D005304 ORTHO05D004438 1.8e-12 76.3 116 40.5
MSTRG.27507 Avicennia marina HOM05D005304 ORTHO05D004438 2.3e-12 75.9 81 53.1
Lsat_1_v5_gn_9_70641 Lactuca sativa HOM05D005304 ORTHO05D004438 2.3e-12 75.9 109 44.0
TAR623G1332 Trochodendron aralioides HOM05D005304 ORTHO05D004438 2.3e-12 75.9 104 43.3
ClCG08G007940 Citrullus lanatus HOM05D005304 ORTHO05D004438 3.1e-12 75.5 99 42.4
TAR633G0523 Trochodendron aralioides HOM05D005304 ORTHO05D004438 5.2e-12 74.7 87 47.1
Psat6g173960 Pisum sativum HOM05D005304 ORTHO05D004438 6.8e-12 74.3 109 45.0
Atru.chr12.921 Acer truncatum HOM05D005304 ORTHO05D004438 8.9e-12 73.9 89 48.3
Sed0010031 Sechium edule HOM05D005304 ORTHO05D004438 2.0e-11 72.8 70 51.4
Sed0018085 Sechium edule HOM05D005304 ORTHO05D004438 2.0e-11 72.8 94 46.8
Sabra08G0019700 Salix brachista HOM05D005304 ORTHO05D004438 2.6e-11 72.4 59 57.6
Nn2g13894 Nelumbo nucifera HOM05D005304 ORTHO05D004438 3.4e-11 72.0 105 45.7
Lalb_Chr03g0036331 Lupinus albus HOM05D005304 ORTHO05D004438 5.8e-11 71.2 116 44.0
Gorai.009G307700 Gossypium raimondii HOM05D005304 ORTHO05D004438 7.5e-11 70.9 117 42.7
TAR369G0323 Trochodendron aralioides HOM05D001401 ORTHO05D002222 7.5e-11 70.9 102 46.1
SalBow4G2705 Salvia bowleyana HOM05D005304 ORTHO05D004438 9.9e-11 70.5 57 59.6
Gohir.A05G290700 Gossypium hirsutum HOM05D005304 ORTHO05D004438 1.7e-10 69.7 104 44.2
SalBow6G1975 Salvia bowleyana HOM05D005304 ORTHO05D004438 2.9e-10 68.9 98 43.9
Sed0006013 Sechium edule HOM05D005304 ORTHO05D004438 2.9e-10 68.9 107 41.1
Gohir.D05G291900 Gossypium hirsutum HOM05D005304 ORTHO05D004438 4.9e-10 68.2 104 44.2
Nitab4.5_0000593g0370 Nicotiana tabacum HOM05D005304 ORTHO05D004438 4.9e-10 68.2 102 45.1
QL01p014739 Quercus lobata HOM05D005304 ORTHO05D004438 6.4e-10 67.8 79 48.1
TWI63G0695 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 8.3e-10 67.4 73 49.3
Manes.11G153500 Manihot esculenta HOM05D005304 ORTHO05D004438 1.1e-09 67.0 83 44.6
TWI38G0392 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 1.1e-09 67.0 117 37.6
Aqoxy2G01602 Aquilegia oxysepala HOM05D005304 ORTHO05D004438 1.4e-09 66.6 100 42.0
CSS0034177 Camellia sinensis var. sinensis HOM05D005304 ORTHO05D004438 1.4e-09 66.6 77 46.8
Nitab4.5_0000107g0230 Nicotiana tabacum HOM05D005304 ORTHO05D004438 1.9e-09 66.2 85 45.9
PGR044G0041 Punica granatum HOM05D005304 ORTHO05D004438 4.1e-09 65.1 60 60.0
Gohir.D07G109600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 5.4e-09 64.7 59 54.2
Gohir.A05G084500 Gossypium hirsutum HOM05D005304 ORTHO05D004438 7.1e-09 64.3 59 52.5
Gohir.A07G105600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 7.1e-09 64.3 57 54.4
Gohir.D05G087300 Gossypium hirsutum HOM05D005304 ORTHO05D004438 7.1e-09 64.3 59 52.5
Gorai.009G089100 Gossypium raimondii HOM05D005304 ORTHO05D004438 7.1e-09 64.3 59 52.5
Lalb_Chr19g0129331 Lupinus albus HOM05D005304 ORTHO05D004438 9.2e-09 63.9 63 55.6
Duzib150G0717 Durio zibethinus HOM05D005304 ORTHO05D004438 1.2e-08 63.5 63 52.4
Migut.F01597 Erythranthe guttata HOM05D005304 ORTHO05D004438 1.2e-08 63.5 96 44.8
Solyc03g071710.1 Solanum lycopersicum HOM05D005304 ORTHO05D004438 1.2e-08 63.5 64 50.0
Sopen03g019970 Solanum pennellii HOM05D005304 ORTHO05D004438 1.2e-08 63.5 64 50.0
CSS0028161 Camellia sinensis var. sinensis HOM05D005304 ORTHO05D004438 1.6e-08 63.2 80 47.5
DCAR_019059 Daucus carota HOM05D005304 ORTHO05D004438 1.6e-08 63.2 76 46.1
Eucgr.J01032 Eucalyptus grandis HOM05D005304 ORTHO05D004438 3.5e-08 62.0 60 60.0
Duzib168G0406 Durio zibethinus HOM05D005304 ORTHO05D004438 4.6e-08 61.6 58 53.4
PGR142G4012 Punica granatum HOM05D005304 ORTHO05D016259 4.6e-08 61.6 82 42.7
Sed0009329 Sechium edule HOM05D005304 ORTHO05D004438 7.8e-08 60.8 118 33.9
PGSC0003DMG400016914 Solanum tuberosum HOM05D005304 ORTHO05D004438 7.8e-08 60.8 111 38.7
CAN.G612.11 Capsicum annuum HOM05D005304 ORTHO05D004438 1.0e-07 60.5 105 36.2
Solyc11g007860.1 Solanum lycopersicum HOM05D005304 ORTHO05D004438 1.7e-07 59.7 100 38.0
Thecc.09G296200 Theobroma cacao HOM05D005304 ORTHO05D004438 1.7e-07 59.7 58 50.0
CiPaw.14G106000 Carya illinoinensis HOM05D005304 ORTHO05D004438 2.3e-07 59.3 86 39.5
MSTRG.9124 Avicennia marina HOM05D005304 ORTHO05D004438 3.0e-07 58.9 62 53.2
Gorai.001G117700 Gossypium raimondii HOM05D005304 ORTHO05D004438 3.0e-07 58.9 59 50.8
PGSC0003DMG400027330 Solanum tuberosum HOM05D005304 ORTHO05D004438 3.0e-07 58.9 84 40.5
Manes.04G012000 Manihot esculenta HOM05D005304 ORTHO05D004438 3.9e-07 58.5 63 50.8
Potri.009G003400 Populus trichocarpa HOM05D005304 ORTHO05D004438 5.1e-07 58.2 83 43.4
Prupe.6G114400 Prunus persica HOM05D005304 ORTHO05D004438 6.6e-07 57.8 59 50.8
Sopen11g003720 Solanum pennellii HOM05D005304 ORTHO05D004438 6.6e-07 57.8 100 37.0
Sopen11g003740 Solanum pennellii HOM05D021137 ORTHO05D004438 6.6e-07 57.8 80 43.8
PGR119G0321 Punica granatum HOM05D005304 ORTHO05D004438 8.6e-07 57.4 74 47.3
PGSC0003DMG400023483 Solanum tuberosum HOM05D005304 ORTHO05D004438 8.6e-07 57.4 104 37.5
TWI79G0532 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 1.5e-06 56.6 59 47.5
CsaV3_4G024290 Cucumis sativus L. HOM05D003595 ORTHO05D004132 1.9e-06 56.2 100 40.0
Solyc11g007880.1 Solanum lycopersicum HOM05D021137 ORTHO05D004438 2.5e-06 55.8 80 42.5
CiPaw.13G144100 Carya illinoinensis HOM05D005304 ORTHO05D004438 3.3e-06 55.5 90 45.6
MELO3C014591.2 Cucumis melo HOM05D003595 ORTHO05D004132 3.3e-06 55.5 100 39.0
Ciclev10029845m.g Citrus clementina HOM05D005304 ORTHO05D004438 5.6e-06 54.7 99 33.3
THA.LOC104827410 Tarenaya hassleriana HOM05D010843 ORTHO05D012975 9.5e-06 53.9 71 50.7


User provided reference genes

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