Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G2990 Fragaria x ananassa HOM05D004836 ORTHO05D005150 0.0e+00 3471.4 1824 100.0
FAN01G1635 Fragaria x ananassa HOM05D004836 ORTHO05D005150 0.0e+00 3382.8 1814 98.3
FAN06G1091 Fragaria x ananassa HOM05D004836 ORTHO05D005150 0.0e+00 3360.9 1813 98.0
FvH4_7g06090 Fragaria vesca HOM05D004836 ORTHO05D005150 0.0e+00 3301.5 1824 95.8
FAN03G2987 Fragaria x ananassa HOM05D004836 ORTHO05D005150 0.0e+00 3183.3 1814 93.3
RcHm_v2.0_Chr1g0333641 Rosa chinensis HOM05D004836 ORTHO05D005150 0.0e+00 2387.8 1832 72.1
Prupe.7G022200 Prunus persica HOM05D004836 ORTHO05D005150 0.0e+00 1260.7 1844 46.0
Prupe.5G032900 Prunus persica HOM05D004836 ORTHO05D005150 0.0e+00 1248.0 1847 45.7
MD11G1029700 Malus domestica HOM05D004836 ORTHO05D005150 4.2e-310 1068.9 1991 40.9
MD03G1024600 Malus domestica HOM05D004836 ORTHO05D005150 2.8e-301 1039.6 1955 40.4
Haze_09829 Corylus avellana HOM05D004836 ORTHO05D005150 1.0e-202 712.2 2003 34.1
CiPaw.11G204300 Carya illinoinensis HOM05D004836 ORTHO05D005150 1.6e-192 678.3 1962 33.0
QL08p004015 Quercus lobata HOM05D004836 ORTHO05D005150 5.0e-178 630.2 1907 33.5
Thecc.07G013200 Theobroma cacao HOM05D004836 ORTHO05D005150 4.7e-160 570.5 1932 31.7
CANSAT11G1576 Cannabis sativa HOM05D004836 ORTHO05D005150 4.4e-142 510.8 2065 29.9
Duzib213G0869 Durio zibethinus HOM05D004836 ORTHO05D005150 3.4e-134 484.6 1983 29.3
GSVIVG01014692001 Vitis vinifera HOM05D004836 ORTHO05D005150 5.8e-134 483.8 1947 30.5
Dinv40862 Davidia involucrata HOM05D004836 ORTHO05D005150 1.3e-133 482.6 1215 36.8
TAR626G1210 Trochodendron aralioides HOM05D004836 ORTHO05D005150 2.9e-133 481.5 1937 29.4
Dinv10337 Davidia involucrata HOM05D004836 ORTHO05D005150 2.1e-123 448.7 1897 29.4
Gohir.D01G061900 Gossypium hirsutum HOM05D004836 ORTHO05D005150 6.0e-123 447.2 1972 29.0
CANSAT35G0529 Cannabis sativa HOM05D004836 ORTHO05D005150 3.0e-122 444.9 1171 33.5
Potri.001G368200 Populus trichocarpa HOM05D004836 ORTHO05D005150 3.0e-122 444.9 1884 30.1
Ciclev10007227m.g Citrus clementina HOM05D004836 ORTHO05D005150 5.7e-121 440.7 2105 28.8
Gorai.002G100500 Gossypium raimondii HOM05D004836 ORTHO05D005150 5.7e-121 440.7 1946 28.9
Actinidia05002 Actinidia chinensis HOM05D004836 ORTHO05D005150 9.6e-121 439.9 1902 29.2
Atru.chr2.3693 Acer truncatum HOM05D004836 ORTHO05D005150 2.4e-119 435.3 744 42.1
Rhsim06G0230000 Rhododendron simsii HOM05D004836 ORTHO05D005150 2.4e-119 435.3 1885 29.3
MD00G1168400 Malus domestica HOM05D004836 ORTHO05D005150 1.5e-118 432.6 516 56.6
TAR624G0729 Trochodendron aralioides HOM05D004836 ORTHO05D005150 2.2e-117 428.7 1912 28.8
Gohir.A01G091700 Gossypium hirsutum HOM05D004836 ORTHO05D005150 1.6e-115 422.5 1518 31.1
TWI38G0981 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 3.0e-114 418.3 1896 28.3
Gorai.013G152400 Gossypium raimondii HOM05D004836 ORTHO05D005150 1.4e-108 399.4 1961 28.2
Sabra16G0241300 Salix brachista HOM05D004836 ORTHO05D005150 1.6e-107 396.0 1958 28.5
CSS0029600 Camellia sinensis var. sinensis HOM05D004836 ORTHO05D005150 6.7e-106 390.6 850 40.9
Actinidia37154 Actinidia chinensis HOM05D004836 ORTHO05D005150 4.8e-104 384.4 862 38.5
Gohir.A13G132500 Gossypium hirsutum HOM05D004836 ORTHO05D005150 8.2e-104 383.6 1948 28.0
Manes.03G141700 Manihot esculenta HOM05D004836 ORTHO05D005150 1.6e-99 369.4 1611 30.2
Sed0002835 Sechium edule HOM05D004836 ORTHO05D005150 2.3e-98 365.5 1683 30.2
MD11G1030200 Malus domestica HOM05D004836 ORTHO05D005150 3.0e-98 365.2 462 56.3
Gohir.D13G135900 Gossypium hirsutum HOM05D004836 ORTHO05D005150 2.0e-97 362.5 1715 29.6
CsaV3_7G011380 Cucumis sativus L. HOM05D004836 ORTHO05D005150 1.4e-95 356.3 1869 28.3
Glyma.20G112200 Glycine max HOM05D004836 ORTHO05D005150 1.5e-92 346.3 1713 28.5
PGR083G2228 Punica granatum HOM05D004836 ORTHO05D005150 2.3e-90 339.0 1887 27.2
Glyma.10G277400 Glycine max HOM05D004836 ORTHO05D005150 1.5e-89 336.3 1670 28.9
COL.COLO4_09837 Corchorus olitorius HOM05D004836 ORTHO05D005150 2.6e-89 335.5 1871 26.3
Nitab4.5_0007415g0020 Nicotiana tabacum HOM05D004836 ORTHO05D005150 4.8e-88 331.3 2017 27.3
Lj5g0000015 Lotus japonicus HOM05D004836 ORTHO05D005150 8.2e-88 330.5 1646 28.4
Eucgr.F02046 Eucalyptus grandis HOM05D004836 ORTHO05D005150 1.2e-86 326.6 618 42.1
ClCG09G021380 Citrullus lanatus HOM05D004836 ORTHO05D005150 2.7e-86 325.5 1630 28.8
Manes.15G059500 Manihot esculenta HOM05D004836 ORTHO05D005150 2.7e-86 325.5 852 35.9
Nitab4.5_0002736g0020 Nicotiana tabacum HOM05D004836 ORTHO05D005150 8.5e-85 320.5 667 42.1
CAN.G623.12 Capsicum annuum HOM05D004836 ORTHO05D005150 5.5e-84 317.8 839 36.0
Phvul.003G265300 Phaseolus vulgaris HOM05D004836 ORTHO05D005150 1.2e-83 316.6 1597 28.0
PGSC0003DMG400022276 Solanum tuberosum HOM05D004836 ORTHO05D005150 1.6e-83 316.2 671 40.7
Migut.M01650 Erythranthe guttata HOM05D004836 ORTHO05D005150 2.6e-81 308.9 906 34.0
Oeu014362.2 Olea europaea HOM05D004836 ORTHO05D005150 4.8e-80 304.7 836 34.4
arahy.Tifrunner.gnm1.ann1.LI7RG4 Arachis hypogaea HOM05D004836 ORTHO05D005150 8.3e-80 303.9 1698 28.6
Phvul.007G023800 Phaseolus vulgaris HOM05D004836 ORTHO05D005150 1.4e-79 303.1 1672 27.4
CSS0003147 Camellia sinensis var. sinensis HOM05D004836 ORTHO05D005150 1.2e-78 300.1 499 48.9
Sed0003689 Sechium edule HOM05D004836 ORTHO05D005150 1.2e-78 300.1 739 38.6
Lalb_Chr06g0166281 Lupinus albus HOM05D004836 ORTHO05D005150 3.5e-78 298.5 1882 26.4
Sopen07g033810 Solanum pennellii HOM05D004836 ORTHO05D005150 4.5e-78 298.1 665 39.8
Solyc07g065600.3 Solanum lycopersicum HOM05D004836 ORTHO05D005150 8.5e-77 293.9 1974 26.6
arahy.Tifrunner.gnm1.ann1.D5NCPP Arachis hypogaea HOM05D004836 ORTHO05D005150 5.5e-76 291.2 1655 28.0
TWI39G0854 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 7.2e-76 290.8 465 49.5
MELO3C024947.2 Cucumis melo HOM05D004836 ORTHO05D005150 3.6e-75 288.5 661 39.0
Lalb_Chr21g0309081 Lupinus albus HOM05D004836 ORTHO05D005150 2.3e-74 285.8 1910 25.9
Peaxi162Scf00139g01321 Petunia axillaris HOM05D004836 ORTHO05D005150 6.8e-74 284.3 1963 25.9
Ca_25650_v3 Cicer arietinum L. HOM05D004836 ORTHO05D005150 4.4e-73 281.6 1631 27.8
Medtr1g111660 Medicago truncatula HOM05D004836 ORTHO05D005150 3.1e-71 275.4 1909 25.5
Cc05_g14960 Coffea canephora HOM05D004836 ORTHO05D005150 3.5e-70 271.9 1941 25.7
Nn1g03169 Nelumbo nucifera HOM05D004836 ORTHO05D005150 3.5e-70 271.9 752 37.1
Cpa.g.sc12.114 Carica papaya HOM05D004836 ORTHO05D005150 4.5e-70 271.6 848 31.6
VMungo0720G3177 Vigna mungo HOM05D004836 ORTHO05D005150 5.9e-70 271.2 1615 28.3
Sc03g0011420 Simmondsia chinensis HOM05D004836 ORTHO05D005150 2.6e-65 255.8 847 33.8
Sc03g0011330 Simmondsia chinensis HOM05D004836 ORTHO05D005150 1.3e-64 253.4 847 33.4
MBI15_g03895_MAGBIO Magnolia biondii HOM05D004836 ORTHO05D005150 3.7e-64 251.9 1572 27.5
Hund23108 Selenicereus undatus HOM05D004836 ORTHO05D005150 6.4e-64 251.1 840 33.0
Sc16g0008100 Simmondsia chinensis HOM05D004836 ORTHO05D005150 6.4e-64 251.1 1031 29.3
Oeu046935.1 Olea europaea HOM05D004836 ORTHO05D005150 1.4e-63 250.0 1740 25.6
Carub.0008s1617 Capsella rubella HOM05D004836 ORTHO05D005150 1.8e-63 249.6 1921 26.6
THA.LOC104811669 Tarenaya hassleriana HOM05D004836 ORTHO05D005150 1.2e-62 246.9 728 35.9
SGA_v2.0_scaffold171G38861 Striga asiatica HOM05D004836 ORTHO05D005150 1.0e-61 243.8 1736 26.0
HanXRQChr03g0074011 Helianthus annuus HOM05D004836 ORTHO05D005150 6.6e-61 241.1 637 38.5
SGA_v2.0_scaffold168G38564 Striga asiatica HOM05D004836 ORTHO05D005150 5.6e-60 238.0 851 32.3
Hund20644 Selenicereus undatus HOM05D004836 ORTHO05D005150 6.2e-59 234.6 852 32.9
Psat6g230520 Pisum sativum HOM05D004836 ORTHO05D005150 4.0e-58 231.9 1661 26.9
AL8G31380 Arabidopsis lyrata HOM05D004836 ORTHO05D005150 3.4e-57 228.8 753 33.2
Rhsim04G0012500 Rhododendron simsii HOM05D004836 ORTHO05D005150 3.4e-57 228.8 651 33.6
TPR.G26309 Trifolium pratense HOM05D004836 ORTHO05D005150 9.8e-57 227.3 1393 26.6
AT5G55820 Arabidopsis thaliana HOM05D004836 ORTHO05D005150 3.2e-55 222.2 754 34.6
DCAR_013235 Daucus carota HOM05D004836 ORTHO05D005150 4.1e-55 221.9 1929 24.7
CARHR269190 Cardamine hirsuta HOM05D004836 ORTHO05D005150 2.5e-52 212.6 671 35.8
vmacro11592 Vaccinium macrocarpon HOM05D004836 ORTHO05D005150 5.6e-52 211.5 841 28.9
EL10Ac4g07562 Beta vulgaris HOM05D004836 ORTHO05D005150 3.6e-51 208.8 673 35.1
AUR62036461 Chenopodium quinoa HOM05D004836 ORTHO05D005150 2.3e-50 206.1 894 29.5
Lj1A890T52 Lonicera japonica HOM05D004836 ORTHO05D005150 4.9e-48 198.4 699 33.9
Ah.06g181450 Amaranthus hybridus HOM05D004836 ORTHO05D005150 7.1e-47 194.5 715 31.0
Sp6g17700 Schrenkiella parvula HOM05D004836 ORTHO05D005150 1.2e-46 193.7 1961 23.4
Aa31LG3G11720 Aethionema arabicum HOM05D004836 ORTHO05D005150 2.7e-46 192.6 2049 25.4
C03p16240 Brassica napus HOM05D004836 ORTHO05D005150 3.5e-46 192.2 747 31.9
AUR62017108 Chenopodium quinoa HOM05D004836 ORTHO05D005150 1.7e-45 189.9 894 28.6
AUR62006337 Chenopodium quinoa HOM05D004836 ORTHO05D005150 7.3e-44 184.5 491 34.8
HanXRQChr13g0408421 Helianthus annuus HOM05D004836 ORTHO05D005150 7.3e-44 184.5 642 34.7
BolC3t14046H Brassica oleracea HOM05D004836 ORTHO05D005150 6.8e-42 177.9 743 31.2
Lsat_1_v5_gn_9_90560 Lactuca sativa HOM05D004836 ORTHO05D005150 2.0e-41 176.4 1392 25.4
Hma1.2p1_1109F.1_g258180 Hydrangea macrophylla HOM05D004836 ORTHO05D005150 4.4e-41 175.3 286 41.6
Aqoxy4G02292 Aquilegia oxysepala HOM05D004836 ORTHO05D005150 1.3e-40 173.7 822 30.8
BraA03t10683Z Brassica rapa HOM05D004836 ORTHO05D005150 4.9e-40 171.8 743 30.8
A03p13800 Brassica napus HOM05D004836 ORTHO05D005150 5.4e-39 168.3 707 31.8
Thhalv10012421m.g Eutrema salsugineum HOM05D004836 ORTHO05D005150 2.1e-35 156.4 1637 24.7
ECA240G1942 Erigeron canadensis HOM05D004836 ORTHO05D000368 4.8e-27 128.6 1673 23.4
CDE04G0223 Ceratophyllum demersum HOM05D000588 ORTHO05D005150 8.1e-27 127.9 634 31.9
MD00G1168200 Malus domestica HOM05D004836 ORTHO05D005150 1.2e-25 124.0 191 41.9
ATR0751G141 Amborella trichopoda HOM05D004836 ORTHO05D005150 1.5e-25 123.6 816 28.3
HPP92_018201 Vanilla planifolia HOM05D004836 ORTHO05D005150 2.4e-23 116.3 620 27.1
TWI39G0060 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 7.1e-23 114.8 279 32.3
vmacro11593 Vaccinium macrocarpon HOM05D004836 ORTHO05D005150 1.1e-20 107.5 270 43.7
MD03G1025800 Malus domestica HOM05D004836 ORTHO05D005150 4.3e-20 105.5 253 42.3
TWI39G0173 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 2.1e-19 103.2 178 36.0
BcaB08g35941 Brassica carinata HOM05D004836 ORTHO05D005150 3.1e-18 99.4 445 28.1
AUR62044127 Chenopodium quinoa HOM05D004836 ORTHO05D005150 6.9e-18 98.2 229 38.0
arahy.Tifrunner.gnm1.ann1.TB163P Arachis hypogaea HOM05D004836 ORTHO05D005150 7.9e-14 84.7 223 33.2
Actinidia30399 Actinidia chinensis HOM05D004836 ORTHO05D005150 1.3e-13 84.0 86 54.7
Os09g0477700 Oryza sativa ssp. japonica HOM05D028105 ORTHO05D005150 7.4e-12 78.2 233 32.2
TPR.G26295 Trifolium pratense HOM05D004836 ORTHO05D005150 1.4e-10 73.9 194 35.6
SEGI_26437 Sequoiadendron giganteum HOM05D014698 ORTHO05D016532 9.0e-10 71.2 134 42.5
PSO675G3612 Papaver somniferum HOM05D004836 ORTHO05D005150 2.0e-09 70.1 959 25.5
Lj1A890T51 Lonicera japonica HOM05D004836 ORTHO05D005150 3.4e-09 69.3 213 33.8
Psat2g132120 Pisum sativum HOM05D004836 ORTHO05D005150 3.4e-09 69.3 166 34.9
SEGI_04158 Sequoiadendron giganteum HOM05D014698 ORTHO05D016532 7.6e-09 68.2 150 40.0
Zm00001eb316050 Zea mays HOM05D028105 ORTHO05D005150 1.9e-07 63.5 523 28.7
unitig_22.g5946 Utricularia gibba HOM05D004836 ORTHO05D005150 1.2e-06 60.8 354 28.5
Psat2g132080 Pisum sativum HOM05D004836 ORTHO05D005150 1.6e-06 60.5 183 29.5
CDE02G2584 Ceratophyllum demersum HOM05D004836 ORTHO05D005150 7.9e-06 58.2 51 70.6


User provided reference genes

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