Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G2912 Fragaria x ananassa HOM05D038398 ORTHO05D199981 2.7e-77 292.0 149 100.0
FvH4_4g25990 Fragaria vesca HOM05D022880 ORTHO05D035328 2.5e-27 125.9 142 57.7
FAN10G0631 Fragaria x ananassa HOM05D038398 ORTHO05D204430 2.0e-24 116.3 142 51.4
FvH4_7g32861 Fragaria vesca HOM05D038398 ORTHO05D196565 2.2e-23 112.8 67 88.1
FAN07G0220 Fragaria x ananassa HOM05D000918 ORTHO05D000791 5.1e-20 101.7 101 60.4
FvH4_4g23350 Fragaria vesca HOM05D000918 ORTHO05D000791 7.3e-19 97.8 97 59.8
FAN12G3435 Fragaria x ananassa HOM05D000918 ORTHO05D000791 7.3e-19 97.8 97 59.8
FAN17G0957 Fragaria x ananassa HOM05D000918 ORTHO05D000791 7.3e-19 97.8 97 59.8
RcHm_v2.0_Chr4g0429721 Rosa chinensis HOM05D000918 ORTHO05D000791 2.8e-18 95.9 97 59.8
FvH4_3g44040 Fragaria vesca HOM05D000918 ORTHO05D016429 2.6e-16 89.4 110 51.8
FAN12G0442 Fragaria x ananassa HOM05D022880 ORTHO05D035328 7.6e-16 87.8 48 95.8
PGR119G1557 Punica granatum HOM05D000918 ORTHO05D000791 2.1e-13 79.7 93 52.7
FAN12G4187 Fragaria x ananassa HOM05D000918 ORTHO05D016429 2.7e-13 79.3 110 48.2
Prupe.1G222100 Prunus persica HOM05D000918 ORTHO05D000791 7.9e-13 77.8 95 50.5
Manes.13G008400 Manihot esculenta HOM05D000918 ORTHO05D000791 1.0e-12 77.4 96 49.0
MD13G1122800 Malus domestica HOM05D000918 ORTHO05D000791 1.3e-12 77.0 94 52.1
MD16G1123600 Malus domestica HOM05D000918 ORTHO05D000791 3.9e-12 75.5 94 51.1
Sabra03G0123200 Salix brachista HOM05D000918 ORTHO05D000791 3.9e-12 75.5 96 50.0
QL03p051574 Quercus lobata HOM05D000918 ORTHO05D000791 8.7e-12 74.3 98 49.0
Potri.001G059900 Populus trichocarpa HOM05D000918 ORTHO05D000791 1.1e-11 73.9 96 49.0
FvH4_4g28500 Fragaria vesca HOM05D000918 ORTHO05D197577 2.5e-11 72.8 94 50.0
Atru.chr11.2372 Acer truncatum HOM05D000918 ORTHO05D000791 3.3e-11 72.4 96 50.0
CiPaw.05G106600 Carya illinoinensis HOM05D000918 ORTHO05D000791 5.6e-11 71.6 102 47.1
GSVIVG01000913001 Vitis vinifera HOM05D000918 ORTHO05D000791 5.6e-11 71.6 94 46.8
Dinv17592 Davidia involucrata HOM05D000918 ORTHO05D000791 7.4e-11 71.2 96 46.9
Cfa009392 Carpinus fangiana HOM05D000918 ORTHO05D000791 9.6e-11 70.9 96 47.9
Manes.12G007900 Manihot esculenta HOM05D000918 ORTHO05D000791 1.3e-10 70.5 96 44.8
Sc04g0010320 Simmondsia chinensis HOM05D000918 ORTHO05D000791 1.6e-10 70.1 94 48.9
Haze_12452 Corylus avellana HOM05D000918 ORTHO05D000791 2.1e-10 69.7 103 45.6
Potri.003G168000 Populus trichocarpa HOM05D000918 ORTHO05D000791 2.1e-10 69.7 96 49.0
CiPaw.06G105700 Carya illinoinensis HOM05D000918 ORTHO05D000791 3.7e-10 68.9 94 46.8
CSS0012158 Camellia sinensis var. sinensis HOM05D000918 ORTHO05D000791 4.8e-10 68.6 96 45.8
Eucgr.B03528 Eucalyptus grandis HOM05D000918 ORTHO05D000791 6.2e-10 68.2 91 45.1
Cc11_g17260 Coffea canephora HOM05D000918 ORTHO05D000791 1.1e-09 67.4 98 44.9
COL.COLO4_06831 Corchorus olitorius HOM05D000918 ORTHO05D000791 1.1e-09 67.4 96 49.0
Ah.03g135930 Amaranthus hybridus HOM05D000918 ORTHO05D000791 2.4e-09 66.2 100 48.0
Glyma.02G096800 Glycine max HOM05D000918 ORTHO05D000791 2.4e-09 66.2 97 45.4
EL10Ac6g13541 Beta vulgaris HOM05D000918 ORTHO05D000791 3.1e-09 65.9 97 47.4
Glyma.18G284600 Glycine max HOM05D000918 ORTHO05D000791 5.3e-09 65.1 97 46.4
Oeu012653.1 Olea europaea HOM05D000918 ORTHO05D000791 5.3e-09 65.1 96 46.9
THA.LOC104807406 Tarenaya hassleriana HOM05D000918 ORTHO05D000791 5.3e-09 65.1 97 48.5
THA.LOC104810210 Tarenaya hassleriana HOM05D000918 ORTHO05D000791 5.3e-09 65.1 93 45.2
Gohir.A03G149400 Gossypium hirsutum HOM05D000918 ORTHO05D000791 6.9e-09 64.7 93 47.3
Carub.0006s1128 Capsella rubella HOM05D000918 ORTHO05D000791 9.0e-09 64.3 93 41.9
Dinv11696 Davidia involucrata HOM05D000918 ORTHO05D000791 9.0e-09 64.3 96 43.8
Duzib251G0945 Durio zibethinus HOM05D000918 ORTHO05D000791 9.0e-09 64.3 95 46.3
Gohir.A01G022700 Gossypium hirsutum HOM05D000918 ORTHO05D000791 9.0e-09 64.3 94 45.7
Gohir.D02G172300 Gossypium hirsutum HOM05D000918 ORTHO05D000791 9.0e-09 64.3 95 47.4
Gorai.005G194000 Gossypium raimondii HOM05D000918 ORTHO05D000791 9.0e-09 64.3 95 47.4
Thecc.02G201000 Theobroma cacao HOM05D000918 ORTHO05D000791 1.2e-08 63.9 94 45.7
Gohir.D01G020700 Gossypium hirsutum HOM05D000918 ORTHO05D000791 1.5e-08 63.5 96 44.8
Gorai.002G023200 Gossypium raimondii HOM05D000918 ORTHO05D000791 1.5e-08 63.5 96 44.8
arahy.Tifrunner.gnm1.ann1.50GAHB Arachis hypogaea HOM05D000918 ORTHO05D000791 2.0e-08 63.2 95 43.2
arahy.Tifrunner.gnm1.ann1.EB7VHI Arachis hypogaea HOM05D000918 ORTHO05D000791 2.0e-08 63.2 95 43.2
CANSAT11G2055 Cannabis sativa HOM05D000918 ORTHO05D000791 2.0e-08 63.2 106 40.6
CAN.G1751.6 Capsicum annuum HOM05D000918 ORTHO05D000791 2.6e-08 62.8 96 43.8
A08p26470 Brassica napus HOM05D000918 ORTHO05D000791 3.4e-08 62.4 85 48.2
BraA08t34599Z Brassica rapa HOM05D000918 ORTHO05D000791 3.4e-08 62.4 85 48.2
CSS0016743 Camellia sinensis var. sinensis HOM05D000918 ORTHO05D000791 3.4e-08 62.4 93 44.1
TAR374G1518 Trochodendron aralioides HOM05D000918 ORTHO05D000791 3.4e-08 62.4 97 45.4
BcaC01g01629 Brassica carinata HOM05D000918 ORTHO05D000791 4.5e-08 62.0 85 48.2
C03p73570 Brassica napus HOM05D000918 ORTHO05D000791 4.5e-08 62.0 85 48.2
BolC3t19651H Brassica oleracea HOM05D000918 ORTHO05D000791 4.5e-08 62.0 85 48.2
Thhalv10007147m.g Eutrema salsugineum HOM05D000918 ORTHO05D000791 4.5e-08 62.0 79 50.6
Lj6A830T29 Lonicera japonica HOM05D000918 ORTHO05D000791 4.5e-08 62.0 96 40.6
Sp1g23480 Schrenkiella parvula HOM05D000918 ORTHO05D000791 4.5e-08 62.0 90 47.8
Hund25481 Selenicereus undatus HOM05D000918 ORTHO05D000791 5.8e-08 61.6 100 48.0
TAR371G1230 Trochodendron aralioides HOM05D000918 ORTHO05D000791 5.8e-08 61.6 101 41.6
Actinidia08050 Actinidia chinensis HOM05D000918 ORTHO05D000791 7.6e-08 61.2 96 42.7
Lsat_1_v5_gn_4_261 Lactuca sativa HOM05D000918 ORTHO05D000791 7.6e-08 61.2 99 43.4
AUR62005655 Chenopodium quinoa HOM05D000918 ORTHO05D000791 9.9e-08 60.8 99 46.5
Thhalv10013032m.g Eutrema salsugineum HOM05D000918 ORTHO05D000791 9.9e-08 60.8 94 42.6
SalBow8G2155 Salvia bowleyana HOM05D000918 ORTHO05D000791 9.9e-08 60.8 94 42.6
Actinidia09623 Actinidia chinensis HOM05D000918 ORTHO05D000791 1.3e-07 60.5 94 43.6
Nn3g16392 Nelumbo nucifera HOM05D000918 ORTHO05D000791 1.3e-07 60.5 102 41.2
PGR102G1744 Punica granatum HOM05D000918 ORTHO05D000791 1.3e-07 60.5 98 44.9
Actinidia39794 Actinidia chinensis HOM05D000918 ORTHO05D000791 1.7e-07 60.1 95 43.2
BcaC04g19151 Brassica carinata HOM05D000918 ORTHO05D000791 1.7e-07 60.1 93 39.8
BolC9t59236H Brassica oleracea HOM05D000918 ORTHO05D000791 1.7e-07 60.1 93 39.8
Cpa.g.sc99.51 Carica papaya HOM05D000918 ORTHO05D000791 1.7e-07 60.1 96 41.7
Oeu001323.3 Olea europaea HOM05D000918 ORTHO05D000791 1.7e-07 60.1 95 45.3
ATR0582G210 Amborella trichopoda HOM05D000918 ORTHO05D000791 2.2e-07 59.7 97 41.2
FAN01G0430 Fragaria x ananassa HOM05D038096 ORTHO05D205201 2.2e-07 59.7 80 52.5
AL6G23710 Arabidopsis lyrata HOM05D000918 ORTHO05D000791 2.9e-07 59.3 93 39.8
AT5G13110 Arabidopsis thaliana HOM05D000918 ORTHO05D000791 2.9e-07 59.3 93 39.8
AUR62028898 Chenopodium quinoa HOM05D000918 ORTHO05D000791 2.9e-07 59.3 99 45.5
C03p06760 Brassica napus HOM05D000918 ORTHO05D006630 3.8e-07 58.9 80 45.0
BolC3t13183H Brassica oleracea HOM05D000918 ORTHO05D006630 3.8e-07 58.9 80 45.0
Hund06108 Selenicereus undatus HOM05D000918 ORTHO05D000791 3.8e-07 58.9 103 41.7
C09p63990 Brassica napus HOM05D000918 ORTHO05D006630 4.9e-07 58.5 93 38.7
CARHR200360 Cardamine hirsuta HOM05D000918 ORTHO05D000791 4.9e-07 58.5 94 41.5
A03p05810 Brassica napus HOM05D000918 ORTHO05D000791 6.4e-07 58.2 92 40.2
Carub.0001s2578 Capsella rubella HOM05D000918 ORTHO05D000791 6.4e-07 58.2 94 43.6
Lj1g0014999 Lotus japonicus HOM05D000918 ORTHO05D000791 6.4e-07 58.2 96 42.7
Medtr7g022440 Medicago truncatula HOM05D000918 ORTHO05D000791 6.4e-07 58.2 87 43.7
Aqoxy5G03279 Aquilegia oxysepala HOM05D000918 ORTHO05D000791 8.4e-07 57.8 94 41.5
BcaB01g05376 Brassica carinata HOM05D000918 ORTHO05D000791 8.4e-07 57.8 80 43.8
Ca_07137_v3 Cicer arietinum L. HOM05D000918 ORTHO05D000791 8.4e-07 57.8 97 45.4
PGSC0003DMG400010802 Solanum tuberosum HOM05D000918 ORTHO05D000791 8.4e-07 57.8 92 43.5
Eucgr.H04609 Eucalyptus grandis HOM05D000918 ORTHO05D000791 1.1e-06 57.4 93 43.0
Aqoxy2G02565 Aquilegia oxysepala HOM05D000918 ORTHO05D000791 1.4e-06 57.0 94 40.4
A10p25100 Brassica napus HOM05D000918 ORTHO05D006630 1.4e-06 57.0 93 37.6
BraA10t44571Z Brassica rapa HOM05D000918 ORTHO05D000791 1.4e-06 57.0 93 37.6
Sp6g30870 Schrenkiella parvula HOM05D000918 ORTHO05D000791 1.4e-06 57.0 92 39.1
BcaB03g13998 Brassica carinata HOM05D000918 ORTHO05D000791 1.9e-06 56.6 76 50.0
TPR.G2924 Trifolium pratense HOM05D000918 ORTHO05D000791 1.9e-06 56.6 98 41.8
FvH4_3g22211 Fragaria vesca HOM05D022880 ORTHO05D003172 2.4e-06 56.2 59 57.6
Phvul.008G016900 Phaseolus vulgaris HOM05D000918 ORTHO05D000791 2.4e-06 56.2 98 42.9
BraA03t09920Z Brassica rapa HOM05D000918 ORTHO05D006630 3.2e-06 55.8 80 43.8
DCAR_024658 Daucus carota HOM05D000918 ORTHO05D000791 3.2e-06 55.8 99 38.4
Solyc05g015950.3 Solanum lycopersicum HOM05D000918 ORTHO05D000791 3.2e-06 55.8 93 40.9
Sopen05g011980 Solanum pennellii HOM05D000918 ORTHO05D000791 3.2e-06 55.8 93 40.9
Aa31LG3G14560 Aethionema arabicum HOM05D000918 ORTHO05D000791 4.2e-06 55.5 93 38.7
vmacro01045 Vaccinium macrocarpon HOM05D000918 ORTHO05D000791 4.2e-06 55.5 96 38.5
FAN11G0231 Fragaria x ananassa HOM05D022880 ORTHO05D199543 5.5e-06 55.1 59 55.9
BcaB03g12066 Brassica carinata HOM05D000918 ORTHO05D000791 9.3e-06 54.3 86 45.3
HanXRQChr02g0052871 Helianthus annuus HOM05D000918 ORTHO05D000791 9.3e-06 54.3 99 39.4


User provided reference genes

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