Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G2760 Fragaria x ananassa HOM05D005926 ORTHO05D007001 0.0e+00 1322.0 808 100.0
FvH4_7g05860 Fragaria vesca HOM05D005926 ORTHO05D007001 0.0e+00 1286.9 808 98.3
FAN03G1852 Fragaria x ananassa HOM05D005926 ORTHO05D007001 0.0e+00 1212.6 809 94.2
RcHm_v2.0_Chr1g0333121 Rosa chinensis HOM05D005926 ORTHO05D007001 5.9e-296 1020.8 814 83.3
Prupe.2G085400 Prunus persica HOM05D005926 ORTHO05D007001 6.4e-210 734.9 818 62.5
MD02G1248000 Malus domestica HOM05D005926 ORTHO05D007001 2.7e-208 729.6 817 63.4
MD07G1068100 Malus domestica HOM05D005926 ORTHO05D007001 7.1e-201 704.9 815 64.7
QL04p042256 Quercus lobata HOM05D005926 ORTHO05D007001 3.1e-148 530.0 597 56.3
CiPaw.14G029200 Carya illinoinensis HOM05D005926 ORTHO05D007001 1.7e-141 507.7 638 51.6
CANSAT56G4130 Cannabis sativa HOM05D005926 ORTHO05D007001 1.9e-137 494.2 608 54.4
Manes.07G090100 Manihot esculenta HOM05D005926 ORTHO05D007001 6.6e-130 469.2 610 50.3
Ciclev10030805m.g Citrus clementina HOM05D005926 ORTHO05D007001 1.2e-128 464.9 611 50.6
CsaV3_6G004110 Cucumis sativus L. HOM05D005926 ORTHO05D007001 9.8e-126 455.3 595 51.3
ClCG08G008140 Citrullus lanatus HOM05D005926 ORTHO05D007001 1.9e-124 451.1 594 51.3
Atru.chr12.975 Acer truncatum HOM05D005926 ORTHO05D007001 5.4e-124 449.5 592 49.7
MELO3C019887.2 Cucumis melo HOM05D005926 ORTHO05D007001 7.3e-121 439.1 616 50.3
Dinv30648 Davidia involucrata HOM05D005926 ORTHO05D007001 2.8e-120 437.2 680 44.6
COL.COLO4_06813 Corchorus olitorius HOM05D005926 ORTHO05D007001 1.2e-118 431.8 605 48.8
Potri.008G025000 Populus trichocarpa HOM05D005926 ORTHO05D007001 2.2e-117 427.6 601 47.6
Duzib128G1763 Durio zibethinus HOM05D005926 ORTHO05D007001 3.2e-116 423.7 612 47.2
Duzib106G0448 Durio zibethinus HOM05D005926 ORTHO05D007001 3.9e-114 416.8 590 47.8
Gohir.A05G398500 Gossypium hirsutum HOM05D005926 ORTHO05D007001 7.3e-113 412.5 658 44.7
Gohir.D04G017400 Gossypium hirsutum HOM05D005926 ORTHO05D007001 3.1e-111 407.1 654 44.5
Thecc.10G111000 Theobroma cacao HOM05D005926 ORTHO05D007001 2.0e-110 404.4 611 45.7
Gorai.012G020100 Gossypium raimondii HOM05D005926 ORTHO05D007001 4.4e-110 403.3 658 44.2
Glyma.20G187800 Glycine max HOM05D005926 ORTHO05D007001 1.7e-109 401.4 602 45.7
Sabra10G0182600 Salix brachista HOM05D005926 ORTHO05D007001 2.9e-109 400.6 695 42.0
TWI63G0673 Tripterygium wilfordii HOM05D005926 ORTHO05D007001 3.2e-108 397.1 599 47.4
Sabra08G0016800 Salix brachista HOM05D005926 ORTHO05D007001 3.0e-106 390.6 609 45.2
Medtr1g492840 Medicago truncatula HOM05D005926 ORTHO05D007001 6.2e-104 382.9 602 44.9
Ca_10497_v3 Cicer arietinum L. HOM05D005926 ORTHO05D007001 3.1e-103 380.6 601 46.6
Rhsim03G0105700 Rhododendron simsii HOM05D005926 ORTHO05D007001 6.9e-103 379.4 607 45.0
GSVIVG01034734001 Vitis vinifera HOM05D005926 ORTHO05D007001 2.2e-101 374.4 617 43.9
TAR623G1319 Trochodendron aralioides HOM05D005926 ORTHO05D007001 4.9e-101 373.2 605 45.0
Glyma.10G202600 Glycine max HOM05D005926 ORTHO05D007001 3.2e-100 370.5 593 44.5
Phvul.007G104500 Phaseolus vulgaris HOM05D005926 ORTHO05D007001 4.2e-100 370.2 609 43.8
Psat6g176680 Pisum sativum HOM05D005926 ORTHO05D007001 4.2e-100 370.2 600 44.5
vmacro07227 Vaccinium macrocarpon HOM05D005926 ORTHO05D007001 2.1e-99 367.9 575 47.3
Lj5g0002236 Lotus japonicus HOM05D005926 ORTHO05D007001 6.0e-99 366.3 611 44.7
Sed0009709 Sechium edule HOM05D005926 ORTHO05D007001 1.7e-98 364.8 594 43.8
Cpa.g.sc19.23 Carica papaya HOM05D005926 ORTHO05D007001 5.1e-98 363.2 727 39.3
CSS0031315 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 8.7e-98 362.5 602 44.5
CSS0031564 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 9.6e-97 359.0 618 43.5
Eucgr.G02709 Eucalyptus grandis HOM05D005926 ORTHO05D007001 3.1e-95 354.0 577 44.9
Lj2C28T9 Lonicera japonica HOM05D005926 ORTHO05D007001 2.6e-94 350.9 593 45.5
Nn2g14047 Nelumbo nucifera HOM05D005926 ORTHO05D007001 1.0e-90 339.0 599 42.2
Lalb_Chr03g0036371 Lupinus albus HOM05D005926 ORTHO05D007001 3.0e-90 337.4 594 43.9
TPR.G2562 Trifolium pratense HOM05D005926 ORTHO05D007001 8.7e-90 335.9 597 43.2
CSS0037332 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 2.5e-89 334.3 666 39.9
Sed0000046 Sechium edule HOM05D005926 ORTHO05D007001 4.3e-89 333.6 540 44.1
Actinidia18581 Actinidia chinensis HOM05D005926 ORTHO05D007001 6.2e-88 329.7 610 41.8
Hma1.2p1_0010F.1_g007030 Hydrangea macrophylla HOM05D005926 ORTHO05D007001 6.9e-87 326.2 476 48.1
VMungo0720G0267 Vigna mungo HOM05D005926 ORTHO05D007001 9.0e-87 325.9 553 42.9
TAR369G1114 Trochodendron aralioides HOM05D005926 ORTHO05D007001 2.0e-86 324.7 692 40.0
Nn6g35019 Nelumbo nucifera HOM05D005926 ORTHO05D007001 1.7e-85 321.6 599 41.1
PGR142G4330 Punica granatum HOM05D005926 ORTHO05D007001 4.2e-84 317.0 607 41.2
Cc02_g10060 Coffea canephora HOM05D005926 ORTHO05D007001 1.2e-83 315.5 600 42.8
arahy.Tifrunner.gnm1.ann1.J9ASUV Arachis hypogaea HOM05D005926 ORTHO05D007001 8.7e-82 309.3 576 43.1
SalBow6G1645 Salvia bowleyana HOM05D005926 ORTHO05D007001 8.7e-82 309.3 588 41.3
CSS0015422 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 7.4e-81 306.2 658 38.4
Nitab4.5_0003396g0030 Nicotiana tabacum HOM05D005926 ORTHO05D007001 1.4e-79 302.0 584 42.3
Sc06g0002210 Simmondsia chinensis HOM05D005926 ORTHO05D007001 1.4e-76 292.0 607 39.4
TAR636G3019 Trochodendron aralioides HOM05D005926 ORTHO05D007001 1.9e-76 291.6 590 41.2
Nitab4.5_0001027g0040 Nicotiana tabacum HOM05D005926 ORTHO05D007001 1.3e-74 285.4 612 40.5
Haze_02593 Corylus avellana HOM05D005926 ORTHO05D007001 3.3e-73 280.8 299 61.2
Nitab4.5_0002878g0030 Nicotiana tabacum HOM05D005926 ORTHO05D007001 7.4e-73 279.6 596 40.9
Actinidia28534 Actinidia chinensis HOM05D005926 ORTHO05D007001 9.6e-73 279.3 615 37.7
PGSC0003DMG400023487 Solanum tuberosum HOM05D005926 ORTHO05D007001 4.8e-72 276.9 609 40.2
Migut.F00893 Erythranthe guttata HOM05D005926 ORTHO05D007001 8.2e-72 276.2 529 44.0
Peaxi162Scf00004g00119 Petunia axillaris HOM05D005926 ORTHO05D007001 5.3e-71 273.5 598 39.8
Aqoxy4G02869 Aquilegia oxysepala HOM05D005926 ORTHO05D007001 8.5e-69 266.2 597 36.3
Sopen05g033810 Solanum pennellii HOM05D005926 ORTHO05D007001 1.1e-68 265.8 611 39.4
Dinv20819 Davidia involucrata HOM05D005926 ORTHO05D007001 5.5e-68 263.5 347 46.7
ECA232G4290 Erigeron canadensis HOM05D005926 ORTHO05D007001 2.1e-67 261.5 593 37.8
Nitab4.5_0012334g0010 Nicotiana tabacum HOM05D005926 ORTHO05D007001 3.6e-67 260.8 560 40.4
DCAR_014349 Daucus carota HOM05D005926 ORTHO05D007001 1.0e-66 259.2 577 40.6
Aqoxy2G01361 Aquilegia oxysepala HOM05D005926 ORTHO05D007001 2.3e-66 258.1 542 39.1
Solyc05g055360.4 Solanum lycopersicum HOM05D005926 ORTHO05D007001 3.0e-66 257.7 611 38.5
arahy.Tifrunner.gnm1.ann1.9BC44J Arachis hypogaea HOM05D005926 ORTHO05D007001 1.3e-64 252.3 508 42.1
CAN.G1550.12 Capsicum annuum HOM05D005926 ORTHO05D007001 1.6e-64 251.9 589 37.9
Ah.04g163700 Amaranthus hybridus HOM05D005926 ORTHO05D007001 1.4e-63 248.8 561 36.0
AUR62041545 Chenopodium quinoa HOM05D005926 ORTHO05D007001 2.4e-63 248.1 594 36.5
HanXRQChr05g0147041 Helianthus annuus HOM05D005926 ORTHO05D007001 2.9e-61 241.1 595 36.0
Thhalv10010215m.g Eutrema salsugineum HOM05D005926 ORTHO05D007001 5.5e-60 236.9 627 34.9
THA.LOC104814724 Tarenaya hassleriana HOM05D005926 ORTHO05D007001 6.1e-59 233.4 542 36.9
EL10Ac4g08669 Beta vulgaris HOM05D005926 ORTHO05D007001 1.5e-57 228.8 534 37.3
CARHR161990 Cardamine hirsuta HOM05D005926 ORTHO05D007001 1.5e-57 228.8 619 34.6
PSO384G0761 Papaver somniferum HOM05D005926 ORTHO05D007001 1.5e-57 228.8 530 38.1
AL5G32830 Arabidopsis lyrata HOM05D005926 ORTHO05D007001 4.4e-57 227.3 640 33.4
Carub.0005s1860 Capsella rubella HOM05D005926 ORTHO05D007001 4.4e-57 227.3 651 33.9
SGA_v2.0_scaffold62G21348 Striga asiatica HOM05D005926 ORTHO05D007001 5.7e-57 226.9 562 37.5
PSO339G4155 Papaver somniferum HOM05D005926 ORTHO05D007001 8.2e-56 223.0 526 36.7
A09p45300 Brassica napus HOM05D005926 ORTHO05D007001 1.4e-55 222.2 606 33.7
C08p27480 Brassica napus HOM05D005926 ORTHO05D007001 3.1e-55 221.1 600 33.3
BolC8t50365H Brassica oleracea HOM05D005926 ORTHO05D007001 3.1e-55 221.1 600 33.3
BraA09t39993Z Brassica rapa HOM05D005926 ORTHO05D007001 3.1e-55 221.1 606 33.3
AT3G52240 Arabidopsis thaliana HOM05D005926 ORTHO05D007001 2.0e-54 218.4 638 33.9
Sp5g10020 Schrenkiella parvula HOM05D005926 ORTHO05D007001 2.6e-54 218.0 644 31.8
BcaB02g08582 Brassica carinata HOM05D005926 ORTHO05D007001 3.4e-54 217.6 618 33.5
Solyc11g007510.2 Solanum lycopersicum HOM05D005926 ORTHO05D007001 3.2e-52 211.1 497 38.8
PGSC0003DMG400027309 Solanum tuberosum HOM05D005926 ORTHO05D007001 9.4e-52 209.5 551 36.8
BcaC07g39594 Brassica carinata HOM05D005926 ORTHO05D007001 4.7e-51 207.2 584 32.9
C04p40700 Brassica napus HOM05D005926 ORTHO05D007001 9.7e-49 199.5 610 32.6
A04p07120 Brassica napus HOM05D005926 ORTHO05D007001 1.3e-48 199.1 616 32.5
Sopen11g003350 Solanum pennellii HOM05D005926 ORTHO05D007001 1.3e-48 199.1 497 37.4
Lsat_1_v5_gn_6_90261 Lactuca sativa HOM05D005926 ORTHO05D007001 1.7e-48 198.7 516 35.9
BolC4t25653H Brassica oleracea HOM05D005926 ORTHO05D007001 2.2e-48 198.4 602 32.6
BcaC02g09269 Brassica carinata HOM05D005926 ORTHO05D007001 1.1e-47 196.1 609 32.5
Haze_02594 Corylus avellana HOM05D005926 ORTHO05D007001 3.1e-47 194.5 305 43.6
BraA04t16409Z Brassica rapa HOM05D005926 ORTHO05D007001 1.2e-46 192.6 617 32.3
Aa31LG10G7340 Aethionema arabicum HOM05D005926 ORTHO05D007001 2.3e-42 178.3 600 30.8
GSVIVG01031385001 Vitis vinifera HOM05D005926 ORTHO05D007001 7.5e-41 173.3 580 33.3
PSO443G0029 Papaver somniferum HOM05D005926 ORTHO05D007001 1.2e-35 156.0 628 29.9
CDE04G2986 Ceratophyllum demersum HOM05D005926 ORTHO05D007001 3.6e-35 154.5 574 31.9
Os05g0445800 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 6.1e-35 153.7 712 28.5
arahy.Tifrunner.gnm1.ann1.UA3HQT Arachis hypogaea HOM05D005926 ORTHO05D007001 3.7e-32 144.4 372 38.2
arahy.Tifrunner.gnm1.ann1.L8M84U Arachis hypogaea HOM05D005926 ORTHO05D007001 2.4e-31 141.7 369 37.7
Os05g0446500 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 5.4e-31 140.6 719 28.2
Zm00001eb289020 Zea mays HOM05D005926 ORTHO05D007001 1.7e-24 119.0 634 27.8
unitig_0.g760 Utricularia gibba HOM05D005926 ORTHO05D007001 5.4e-23 114.0 400 32.2
Zm00001eb147390 Zea mays HOM05D005926 ORTHO05D007001 7.0e-23 113.6 301 36.9
HPP92_002057 Vanilla planifolia HOM05D005926 ORTHO05D007001 7.3e-20 103.6 204 42.2
ATR0820G003 Amborella trichopoda HOM05D005926 ORTHO05D007001 2.6e-17 95.1 592 26.4
SEGI_23583 Sequoiadendron giganteum HOM05D005926 ORTHO05D007001 8.3e-16 90.1 365 31.8
Os04g0646050 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 1.1e-15 89.7 162 41.4
Oeu026567.1 Olea europaea HOM05D005926 ORTHO05D007001 3.0e-13 81.6 310 29.4


User provided reference genes

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