Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G2759 Fragaria x ananassa HOM05D005178 ORTHO05D006123 5.8e-141 504.2 254 100.0
FAN06G0749 Fragaria x ananassa HOM05D005178 ORTHO05D006123 4.0e-134 481.5 254 95.3
FvH4_7g15840 Fragaria vesca HOM05D005178 ORTHO05D006123 6.9e-134 480.7 254 95.3
FAN10G1950 Fragaria x ananassa HOM05D005178 ORTHO05D006123 9.0e-134 480.3 248 98.0
FAN03G0560 Fragaria x ananassa HOM05D005178 ORTHO05D006123 3.2e-131 471.9 250 95.2
FAN06G4203 Fragaria x ananassa HOM05D005178 ORTHO05D006123 8.7e-129 463.8 248 94.4
RcHm_v2.0_Chr1g0358651 Rosa chinensis HOM05D005178 ORTHO05D006123 2.6e-109 399.1 249 80.3
MD07G1144100 Malus domestica HOM05D005178 ORTHO05D006123 6.6e-60 235.0 255 52.5
Prupe.2G183000 Prunus persica HOM05D005178 ORTHO05D006123 7.0e-54 214.9 255 50.6
MD01G1075000 Malus domestica HOM05D005178 ORTHO05D006123 9.5e-51 204.5 255 48.6
CANSAT56G4005 Cannabis sativa HOM05D005178 ORTHO05D006123 6.4e-47 191.8 255 43.9
Nn7g37376 Nelumbo nucifera HOM05D005178 ORTHO05D006123 4.6e-45 185.7 249 43.0
Gohir.D12G113800 Gossypium hirsutum HOM05D005178 ORTHO05D006123 3.3e-43 179.5 248 41.1
Nn1g01788 Nelumbo nucifera HOM05D005178 ORTHO05D006123 8.1e-42 174.9 246 39.8
Gorai.008G123300 Gossypium raimondii HOM05D005178 ORTHO05D006123 1.1e-41 174.5 248 40.7
Haze_15614 Corylus avellana HOM05D005178 ORTHO05D006123 6.8e-41 171.8 246 43.5
QL04p059571 Quercus lobata HOM05D005178 ORTHO05D006123 2.6e-40 169.9 258 40.7
PGR042G2135 Punica granatum HOM05D005178 ORTHO05D006123 1.1e-38 164.5 259 39.8
Manes.05G026400 Manihot esculenta HOM05D005178 ORTHO05D006123 2.4e-38 163.3 248 39.1
Gorai.007G105400 Gossypium raimondii HOM05D005178 ORTHO05D006123 3.2e-38 162.9 254 40.9
CiPaw.01G071600 Carya illinoinensis HOM05D005178 ORTHO05D006123 7.1e-38 161.8 254 42.5
Gohir.D11G099200 Gossypium hirsutum HOM05D005178 ORTHO05D006123 9.2e-38 161.4 254 40.9
Gorai.004G153000 Gossypium raimondii HOM05D005178 ORTHO05D006123 2.1e-37 160.2 248 38.7
Gohir.A11G094200 Gossypium hirsutum HOM05D005178 ORTHO05D006123 3.5e-37 159.5 254 40.9
Gohir.D08G147400 Gossypium hirsutum HOM05D005178 ORTHO05D006123 6.0e-37 158.7 248 38.3
Thecc.01G348100 Theobroma cacao HOM05D005178 ORTHO05D006123 1.3e-36 157.5 253 40.7
Potri.002G167300 Populus trichocarpa HOM05D005178 ORTHO05D006123 3.0e-36 156.4 249 38.2
Sc01g0002990 Simmondsia chinensis HOM05D005178 ORTHO05D006123 3.0e-36 156.4 250 42.0
Gohir.A08G126100 Gossypium hirsutum HOM05D005178 ORTHO05D006123 3.9e-36 156.0 244 38.1
Duzib133G0451 Durio zibethinus HOM05D005178 ORTHO05D006123 8.6e-36 154.8 255 40.8
Sabra02G0144400 Salix brachista HOM05D005178 ORTHO05D006123 1.5e-35 154.1 244 37.3
Potri.014G094400 Populus trichocarpa HOM05D005178 ORTHO05D006123 2.8e-34 149.8 249 39.0
Duzib138G0021 Durio zibethinus HOM05D005178 ORTHO05D006123 4.7e-34 149.1 255 39.2
MBI06_g02230_MAGBIO Magnolia biondii HOM05D005178 ORTHO05D006123 1.1e-33 147.9 245 37.6
Aa31LG5G850 Aethionema arabicum HOM05D005178 ORTHO05D006123 2.3e-33 146.7 255 36.1
AL1G10980 Arabidopsis lyrata HOM05D005178 ORTHO05D006123 2.3e-33 146.7 255 37.6
ClCG08G003840 Citrullus lanatus HOM05D005178 ORTHO05D006123 5.2e-33 145.6 259 36.7
BcaC01g05079 Brassica carinata HOM05D005178 ORTHO05D006123 1.5e-32 144.1 258 38.8
CsaV3_3G008390 Cucumis sativus L. HOM05D000050 ORTHO05D000380 2.0e-32 143.7 252 35.3
Dinv32550 Davidia involucrata HOM05D005178 ORTHO05D006123 2.0e-32 143.7 246 38.2
AL4G45600 Arabidopsis lyrata HOM05D005178 ORTHO05D006123 2.6e-32 143.3 253 34.4
C03p38880 Brassica napus HOM05D005178 ORTHO05D006123 3.4e-32 142.9 254 40.6
HPP92_005223 Vanilla planifolia HOM05D005178 ORTHO05D006123 4.4e-32 142.5 255 33.7
C05p00550 Brassica napus HOM05D005178 ORTHO05D006123 5.8e-32 142.1 260 38.5
Aa31LG1G27670 Aethionema arabicum HOM05D005178 ORTHO05D006123 9.9e-32 141.4 241 33.6
C03p30470 Brassica napus HOM05D005178 ORTHO05D006123 9.9e-32 141.4 250 36.4
BolC3t15395H Brassica oleracea HOM05D005178 ORTHO05D006123 9.9e-32 141.4 250 36.4
Dinv43890 Davidia involucrata HOM05D005178 ORTHO05D006123 1.3e-31 141.0 253 36.8
BcaB03g13583 Brassica carinata HOM05D005178 ORTHO05D006123 1.7e-31 140.6 260 38.8
A10p00520 Brassica napus HOM05D005178 ORTHO05D006123 2.2e-31 140.2 260 38.8
A05p01500 Brassica napus HOM05D005178 ORTHO05D006123 2.9e-31 139.8 256 37.1
BraA05t19146Z Brassica rapa HOM05D005178 ORTHO05D006123 2.9e-31 139.8 256 37.1
BcaC01g06846 Brassica carinata HOM05D005178 ORTHO05D006123 3.8e-31 139.4 258 39.5
Hma1.2p1_2972F.1_g331100 Hydrangea macrophylla HOM05D005178 ORTHO05D006123 3.8e-31 139.4 250 36.8
CARHR000970 Cardamine hirsuta HOM05D005178 ORTHO05D006123 4.9e-31 139.0 258 35.7
BcaC02g12521 Brassica carinata HOM05D005178 ORTHO05D006123 6.4e-31 138.7 258 36.4
PSO135G0875 Papaver somniferum HOM05D005178 ORTHO05D006123 6.4e-31 138.7 254 35.4
CiPaw.02G038200 Carya illinoinensis HOM05D005178 ORTHO05D006123 8.4e-31 138.3 251 37.1
BolC5t28844H Brassica oleracea HOM05D005178 ORTHO05D006123 1.1e-30 137.9 257 38.9
MELO3C006056.2 Cucumis melo HOM05D005178 ORTHO05D006123 1.1e-30 137.9 249 36.1
AT2G46300 Arabidopsis thaliana HOM05D005178 ORTHO05D006123 1.9e-30 137.1 253 34.0
Hma1.2p1_0384F.1_g141000 Hydrangea macrophylla HOM05D005178 ORTHO05D006123 1.9e-30 137.1 249 38.6
Lj1g0025938 Lotus japonicus HOM05D005178 ORTHO05D006123 1.9e-30 137.1 249 35.3
PSO384G3117 Papaver somniferum HOM05D005178 ORTHO05D006123 1.9e-30 137.1 254 35.4
BcaB01g02336 Brassica carinata HOM05D005178 ORTHO05D006123 3.2e-30 136.3 258 38.0
C04p01700 Brassica napus HOM05D005178 ORTHO05D006123 3.2e-30 136.3 255 36.9
BolC3t16162H Brassica oleracea HOM05D005178 ORTHO05D006123 3.2e-30 136.3 254 39.0
BolC4t21822H Brassica oleracea HOM05D005178 ORTHO05D006123 3.2e-30 136.3 255 36.9
BraA10t42331Z Brassica rapa HOM05D005178 ORTHO05D006123 7.1e-30 135.2 260 37.7
Ciclev10021837m.g Citrus clementina HOM05D005178 ORTHO05D006123 1.2e-29 134.4 249 39.4
Phvul.006G110000 Phaseolus vulgaris HOM05D005178 ORTHO05D006123 1.2e-29 134.4 269 35.3
Carub.0006s3617 Capsella rubella HOM05D005178 ORTHO05D006123 1.6e-29 134.0 267 37.8
CARHR249180 Cardamine hirsuta HOM05D005178 ORTHO05D006123 1.6e-29 134.0 262 37.4
A03p31890 Brassica napus HOM05D005178 ORTHO05D006123 2.7e-29 133.3 254 39.0
Sed0019896 Sechium edule HOM05D005178 ORTHO05D006123 4.6e-29 132.5 256 37.1
AL6G52250 Arabidopsis lyrata HOM05D005178 ORTHO05D006123 6.0e-29 132.1 262 37.0
Thhalv10001596m.g Eutrema salsugineum HOM05D005178 ORTHO05D006123 6.0e-29 132.1 257 32.7
Thhalv10028895m.g Eutrema salsugineum HOM05D005178 ORTHO05D006123 6.0e-29 132.1 261 37.5
Sopen10g005540 Solanum pennellii HOM05D005178 ORTHO05D006123 6.0e-29 132.1 256 34.8
Carub.0001s0080 Capsella rubella HOM05D005178 ORTHO05D006123 1.7e-28 130.6 260 37.7
Rhsim07G0007300 Rhododendron simsii HOM05D005178 ORTHO05D006123 1.7e-28 130.6 246 37.4
Sed0006216 Sechium edule HOM05D005178 ORTHO05D006123 2.3e-28 130.2 244 31.1
Atru.chr5.616 Acer truncatum HOM05D005178 ORTHO05D006123 5.1e-28 129.0 254 35.0
AT1G01453 Arabidopsis thaliana HOM05D005178 ORTHO05D006123 5.1e-28 129.0 255 35.7
THA.LOC104825868 Tarenaya hassleriana HOM05D005178 ORTHO05D006123 5.1e-28 129.0 259 35.5
Solyc10g011750.3 Solanum lycopersicum HOM05D005178 ORTHO05D006123 6.6e-28 128.6 251 35.1
Lj7A504T56 Lonicera japonica HOM05D005178 ORTHO05D006123 8.6e-28 128.3 247 36.8
SGA_v2.0_scaffold11G05717 Striga asiatica HOM05D005178 ORTHO05D006123 8.6e-28 128.3 236 37.3
Sp6g01000 Schrenkiella parvula HOM05D005178 ORTHO05D006123 1.1e-27 127.9 262 37.4
AT4G01110 Arabidopsis thaliana HOM05D005178 ORTHO05D006123 1.5e-27 127.5 264 36.7
Ca_09491_v3 Cicer arietinum L. HOM05D005178 ORTHO05D006123 1.9e-27 127.1 253 36.0
C02p38280 Brassica napus HOM05D005178 ORTHO05D006123 3.3e-27 126.3 253 38.3
BolC2t09843H Brassica oleracea HOM05D005178 ORTHO05D006123 3.3e-27 126.3 252 38.5
VMungo0540G0638 Vigna mungo HOM05D005178 ORTHO05D006123 3.3e-27 126.3 266 34.2
BcaC03g16062 Brassica carinata HOM05D005178 ORTHO05D006123 5.6e-27 125.6 252 38.1
BraA02t07418Z Brassica rapa HOM05D005178 ORTHO05D006123 5.6e-27 125.6 253 38.3
BcaB01g03231 Brassica carinata HOM05D005178 ORTHO05D006123 9.6e-27 124.8 255 34.9
BcaC01g05085 Brassica carinata HOM05D005178 ORTHO05D006123 9.6e-27 124.8 255 34.9
Thhalv10009686m.g Eutrema salsugineum HOM05D005178 ORTHO05D006123 1.2e-26 124.4 255 37.6
Medtr7g116930 Medicago truncatula HOM05D005178 ORTHO05D006123 1.2e-26 124.4 253 36.0
PGSC0003DMG400019400 Solanum tuberosum HOM05D005178 ORTHO05D006123 2.1e-26 123.6 256 34.4
CsaV3_6G003970 Cucumis sativus L. HOM05D005178 ORTHO05D006123 4.7e-26 122.5 253 34.4
Sed0008780 Sechium edule HOM05D005178 ORTHO05D006123 1.8e-25 120.6 242 34.3
Aqoxy7G00174 Aquilegia oxysepala HOM05D005178 ORTHO05D006123 2.4e-25 120.2 254 34.3
Sp1g00860 Schrenkiella parvula HOM05D005178 ORTHO05D006123 2.4e-25 120.2 249 36.5
BraA03t12361Z Brassica rapa HOM05D005178 ORTHO05D006123 8.9e-25 118.2 254 36.2
Aa31LG1G10830 Aethionema arabicum HOM05D005178 ORTHO05D006123 1.2e-24 117.9 247 34.8
MELO3C029922.2 Cucumis melo HOM05D005178 ORTHO05D006123 1.2e-24 117.9 250 32.8
HPP92_026775 Vanilla planifolia HOM05D005178 ORTHO05D006123 3.4e-24 116.3 248 33.9
Carub.0004s2900 Capsella rubella HOM05D005178 ORTHO05D006123 4.4e-24 115.9 251 30.3
THA.LOC104802056 Tarenaya hassleriana HOM05D005178 ORTHO05D006123 1.3e-23 114.4 247 34.4
A03p25540 Brassica napus HOM05D005178 ORTHO05D006123 2.2e-23 113.6 250 34.0
BraA03t11771Z Brassica rapa HOM05D005178 ORTHO05D006123 2.2e-23 113.6 250 34.0
FAN01G2778 Fragaria x ananassa HOM05D005178 ORTHO05D006123 3.8e-23 112.8 52 98.1
TWI14G0215 Tripterygium wilfordii HOM05D005178 ORTHO05D006123 1.1e-22 111.3 249 31.3
Lalb_Chr04g0261721 Lupinus albus HOM05D005178 ORTHO05D006123 1.4e-22 110.9 183 35.0
Peaxi162Scf00403g00074 Petunia axillaris HOM05D005178 ORTHO05D006123 1.4e-22 110.9 240 32.5
CAN.G1651.2 Capsicum annuum HOM05D005178 ORTHO05D006123 1.9e-22 110.5 247 32.0
CARHR141580 Cardamine hirsuta HOM05D005178 ORTHO05D006123 2.4e-22 110.2 254 29.9
THA.LOC104817334 Tarenaya hassleriana HOM05D005178 ORTHO05D006123 9.3e-22 108.2 249 32.1
Sp4g28340 Schrenkiella parvula HOM05D005178 ORTHO05D006123 1.6e-21 107.5 257 31.5
Glyma.19G252900 Glycine max HOM05D005178 ORTHO05D006123 3.5e-21 106.3 249 32.9
Nitab4.5_0005619g0010 Nicotiana tabacum HOM05D005178 ORTHO05D006123 4.6e-21 105.9 249 32.5
Gohir.A12G110633 Gossypium hirsutum HOM05D005178 ORTHO05D006123 1.7e-20 104.0 146 41.8
Glyma.03G255300 Glycine max HOM05D005178 ORTHO05D006123 2.3e-20 103.6 244 32.0
SHI13195 Sapria himalayana HOM05D005178 ORTHO05D006123 5.1e-20 102.4 247 26.7
Actinidia10100 Actinidia chinensis HOM05D005178 ORTHO05D006123 6.6e-20 102.1 259 33.6
A02p24280 Brassica napus HOM05D005178 ORTHO05D006123 3.3e-19 99.8 175 36.0
Oeu008679.1 Olea europaea HOM05D005178 ORTHO05D006123 5.6e-19 99.0 167 31.7
CSS0038689 Camellia sinensis var. sinensis HOM05D005178 ORTHO05D006123 9.6e-19 98.2 243 33.7
TPR.G4707 Trifolium pratense HOM05D005178 ORTHO05D006123 1.6e-18 97.4 243 31.7
Nitab4.5_0003779g0030 Nicotiana tabacum HOM05D005178 ORTHO05D006123 6.2e-18 95.5 234 30.8
Sabra14G0069000 Salix brachista HOM05D005178 ORTHO05D006123 4.0e-17 92.8 162 32.1
Peaxi162Scf00099g00191 Petunia axillaris HOM05D005178 ORTHO05D006123 5.3e-17 92.4 247 32.0
Nitab4.5_0002262g0140 Nicotiana tabacum HOM05D005178 ORTHO05D006123 9.0e-17 91.7 240 32.5
TAR375G0073 Trochodendron aralioides HOM05D005178 ORTHO05D006123 5.8e-16 89.0 116 38.8
Nitab4.5_0000522g0010 Nicotiana tabacum HOM05D005178 ORTHO05D006123 3.2e-14 83.2 218 31.2
SalBow5G4166 Salvia bowleyana HOM05D005178 ORTHO05D006123 1.6e-13 80.9 252 27.0
vmacro13200 Vaccinium macrocarpon HOM05D005178 ORTHO05D006123 2.7e-13 80.1 206 38.3
ATR1127G036 Amborella trichopoda HOM05D005178 ORTHO05D006123 1.3e-12 77.8 245 26.9
BcaC01g05083 Brassica carinata HOM05D005178 ORTHO05D006123 3.0e-12 76.6 104 35.6
AUR62023503 Chenopodium quinoa HOM05D005178 ORTHO05D006123 1.9e-11 73.9 99 34.3
Psat3g003480 Pisum sativum HOM05D005178 ORTHO05D006123 1.6e-10 70.9 136 29.4
AUR62004447 Chenopodium quinoa HOM05D005178 ORTHO05D006123 2.1e-10 70.5 99 32.3
SEGI_25000 Sequoiadendron giganteum HOM05D000973 ORTHO05D000652 8.1e-10 68.6 202 31.2
Mapoly0067s0044 Marchantia polymorpha HOM05D000973 ORTHO05D000652 1.1e-09 68.2 206 24.8
SEGI_01812 Sequoiadendron giganteum HOM05D000973 ORTHO05D000652 1.1e-09 68.2 208 33.2
Pp3c23_12930 Physcomitrium patens HOM05D000973 ORTHO05D003779 1.4e-09 67.8 245 24.5
SEGI_09853 Sequoiadendron giganteum HOM05D000973 ORTHO05D000652 2.4e-09 67.0 183 31.7
Dinv30376 Davidia involucrata HOM05D002137 ORTHO05D002144 3.1e-09 66.6 211 26.1
Dinv10735 Davidia involucrata HOM05D000973 ORTHO05D000652 6.9e-09 65.5 200 34.0
MBI19_g28097_MAGBIO Magnolia biondii HOM05D000973 ORTHO05D000652 1.5e-08 64.3 231 31.6
TAR636G1424 Trochodendron aralioides HOM05D000973 ORTHO05D000652 5.8e-08 62.4 249 28.1
SEGI_30112 Sequoiadendron giganteum HOM05D000973 ORTHO05D000652 2.2e-07 60.5 211 28.0
GSVIVG01016858001 Vitis vinifera HOM05D002137 ORTHO05D002144 2.2e-07 60.5 192 25.0
SEGI_30661 Sequoiadendron giganteum HOM05D000973 ORTHO05D000652 2.9e-07 60.1 185 32.4
CiPaw.02G139800 Carya illinoinensis HOM05D002137 ORTHO05D002144 6.4e-07 58.9 226 26.1
Lalb_Chr04g0249711 Lupinus albus HOM05D000973 ORTHO05D000652 1.4e-06 57.8 197 31.0
PSO384G0774 Papaver somniferum HOM05D000973 ORTHO05D000652 1.4e-06 57.8 214 29.4
MD00G1119400 Malus domestica HOM05D000973 ORTHO05D000652 1.9e-06 57.4 195 30.3
Sabra15G0156800 Salix brachista HOM05D000973 ORTHO05D000652 3.2e-06 56.6 153 32.0
unitig_26.g8929 Utricularia gibba HOM05D002137 ORTHO05D002144 3.2e-06 56.6 255 26.3
TAR544G0003 Trochodendron aralioides HOM05D000973 ORTHO05D000652 4.2e-06 56.2 252 25.8
Nn6g35491 Nelumbo nucifera HOM05D002137 ORTHO05D002144 5.5e-06 55.8 190 26.3
CDE08G0759 Ceratophyllum demersum HOM05D002649 ORTHO05D002838 7.1e-06 55.5 198 29.8


User provided reference genes

Program Settings