Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G2628 Fragaria x ananassa HOM05D017399 ORTHO05D020730 4.2e-98 361.3 175 100.0
FAN10G4259 Fragaria x ananassa HOM05D017399 ORTHO05D020730 2.1e-94 349.0 175 97.1
RcHm_v2.0_Chr7g0177921 Rosa chinensis HOM05D002759 ORTHO05D003290 5.5e-50 201.4 187 58.3
FAN03G0661 Fragaria x ananassa HOM05D017399 ORTHO05D020730 2.8e-46 189.1 117 82.1
FAN06G0592 Fragaria x ananassa HOM05D017399 ORTHO05D020730 6.6e-43 177.9 88 94.3
FvH4_7g11070 Fragaria vesca HOM05D017399 ORTHO05D020730 1.0e-40 170.6 142 66.2
FvH4_5g17590 Fragaria vesca HOM05D017399 ORTHO05D045498 6.4e-38 161.4 152 61.2
FAN18G1639 Fragaria x ananassa HOM05D017399 ORTHO05D045498 4.1e-29 132.1 73 82.2
RcHm_v2.0_Chr7g0222331 Rosa chinensis HOM05D002759 ORTHO05D003290 1.2e-25 120.6 222 36.9
Haze_21022 Corylus avellana HOM05D002759 ORTHO05D003290 4.0e-24 115.5 215 37.7
Cfa017189 Carpinus fangiana HOM05D002759 ORTHO05D003290 5.2e-24 115.2 215 37.7
QL02p098685 Quercus lobata HOM05D002759 ORTHO05D003290 1.3e-22 110.5 216 37.0
FAN25G1732 Fragaria x ananassa HOM05D002759 ORTHO05D003290 1.9e-21 106.7 220 34.1
TWI59G0497 Tripterygium wilfordii HOM05D002759 ORTHO05D003290 3.2e-21 105.9 189 37.6
Prupe.1G563000 Prunus persica HOM05D002759 ORTHO05D003290 5.4e-21 105.1 189 37.6
FvH4_3g35420 Fragaria vesca HOM05D002759 ORTHO05D003290 9.2e-21 104.4 220 34.1
FAN11G2638 Fragaria x ananassa HOM05D002759 ORTHO05D003290 9.2e-21 104.4 220 34.1
FAN16G3014 Fragaria x ananassa HOM05D002759 ORTHO05D003290 3.5e-20 102.4 220 33.2
Thecc.02G041500 Theobroma cacao HOM05D002759 ORTHO05D003290 3.5e-20 102.4 189 37.0
COL.COLO4_08439 Corchorus olitorius HOM05D002759 ORTHO05D003290 4.6e-20 102.1 189 35.4
Manes.07G013200 Manihot esculenta HOM05D002759 ORTHO05D003290 7.8e-20 101.3 179 36.9
MD00G1166400 Malus domestica HOM05D002759 ORTHO05D003290 1.0e-19 100.9 218 36.2
MD15G1418900 Malus domestica HOM05D002759 ORTHO05D003290 1.0e-19 100.9 218 36.2
FAN01G1856 Fragaria x ananassa HOM05D002759 ORTHO05D020730 3.0e-19 99.4 93 60.2
Thhalv10029518m.g Eutrema salsugineum HOM05D002759 ORTHO05D003290 3.9e-19 99.0 178 37.6
TAR381G0620 Trochodendron aralioides HOM05D002759 ORTHO05D003290 5.1e-19 98.6 221 33.5
Lalb_Chr20g0123401 Lupinus albus HOM05D002759 ORTHO05D003290 6.6e-19 98.2 214 34.6
FAN06G2218 Fragaria x ananassa HOM05D017399 ORTHO05D210720 8.6e-19 97.8 80 65.0
Potri.003G021700 Populus trichocarpa HOM05D002759 ORTHO05D003290 1.5e-18 97.1 206 33.5
AL7G30550 Arabidopsis lyrata HOM05D002759 ORTHO05D003290 1.9e-18 96.7 180 33.3
C01p17510 Brassica napus HOM05D002759 ORTHO05D003290 2.5e-18 96.3 183 34.4
Ciclev10000008m.g Citrus clementina HOM05D002759 ORTHO05D003290 4.3e-18 95.5 186 37.6
CiPaw.05G042600 Carya illinoinensis HOM05D002759 ORTHO05D003290 9.5e-18 94.4 219 32.4
Atru.chr6.1027 Acer truncatum HOM05D002759 ORTHO05D003290 1.2e-17 94.0 189 36.0
Atru.chr6.1078 Acer truncatum HOM05D002759 ORTHO05D003290 1.2e-17 94.0 189 36.0
A03p53910 Brassica napus HOM05D002759 ORTHO05D003290 4.7e-17 92.0 185 33.0
C07p52320 Brassica napus HOM05D002759 ORTHO05D003290 4.7e-17 92.0 185 33.0
BraA03t14460Z Brassica rapa HOM05D002759 ORTHO05D003290 4.7e-17 92.0 186 32.3
Gorai.002G207900 Gossypium raimondii HOM05D002759 ORTHO05D003290 4.7e-17 92.0 189 34.4
Duzib052G0069 Durio zibethinus HOM05D002759 ORTHO05D003290 6.2e-17 91.7 189 33.9
BcaC09g51048 Brassica carinata HOM05D002759 ORTHO05D003290 1.1e-16 90.9 183 33.3
CSS0015736 Camellia sinensis var. sinensis HOM05D002759 ORTHO05D003290 1.1e-16 90.9 213 32.9
AT4G22970 Arabidopsis thaliana HOM05D002759 ORTHO05D003290 1.4e-16 90.5 185 30.8
Dinv24260 Davidia involucrata HOM05D002759 ORTHO05D003290 1.4e-16 90.5 182 35.7
BolC7t45725H Brassica oleracea HOM05D002759 ORTHO05D003290 1.8e-16 90.1 186 32.3
Lj6g0007416 Lotus japonicus HOM05D002759 ORTHO05D003290 1.8e-16 90.1 211 31.8
GSVIVG01023021001 Vitis vinifera HOM05D002759 ORTHO05D003290 2.3e-16 89.7 216 31.5
BcaNung01007 Brassica carinata HOM05D002759 ORTHO05D003290 4.0e-16 89.0 186 31.2
A01p14240 Brassica napus HOM05D002759 ORTHO05D003290 4.0e-16 89.0 169 34.9
BolC1t01691H Brassica oleracea HOM05D002759 ORTHO05D003290 4.0e-16 89.0 184 32.1
MD08G1226100 Malus domestica HOM05D002759 ORTHO05D003290 4.0e-16 89.0 156 38.5
THA.LOC104814230 Tarenaya hassleriana HOM05D002759 ORTHO05D003290 4.0e-16 89.0 178 33.7
Eucgr.G00634 Eucalyptus grandis HOM05D002759 ORTHO05D003290 8.9e-16 87.8 198 31.8
Medtr2g007790 Medicago truncatula HOM05D002759 ORTHO05D003290 8.9e-16 87.8 187 34.8
Sp7g21060 Schrenkiella parvula HOM05D002759 ORTHO05D003290 8.9e-16 87.8 183 32.8
Carub.0007s1830 Capsella rubella HOM05D002759 ORTHO05D003290 1.2e-15 87.4 184 29.9
Glyma.08G184200 Glycine max HOM05D002759 ORTHO05D003290 1.2e-15 87.4 188 35.6
BraA01t01371Z Brassica rapa HOM05D002759 ORTHO05D003290 1.5e-15 87.0 186 31.7
Hund21015 Selenicereus undatus HOM05D002759 ORTHO05D003290 2.6e-15 86.3 142 35.9
Actinidia39057 Actinidia chinensis HOM05D002759 ORTHO05D003290 3.4e-15 85.9 216 30.1
Glyma.15G048100 Glycine max HOM05D002759 ORTHO05D003290 3.4e-15 85.9 188 34.6
Thhalv10024187m.g Eutrema salsugineum HOM05D002759 ORTHO05D003290 7.6e-15 84.7 183 29.5
Psat1g219920 Pisum sativum HOM05D002759 ORTHO05D003290 7.6e-15 84.7 187 34.2
BcaB05g23798 Brassica carinata HOM05D002759 ORTHO05D003290 9.9e-15 84.3 205 31.2
Medtr7g023120 Medicago truncatula HOM05D002759 ORTHO05D003290 9.9e-15 84.3 188 35.6
Aa31LG6G5020 Aethionema arabicum HOM05D002759 ORTHO05D003290 2.2e-14 83.2 185 30.3
Nn5g28049 Nelumbo nucifera HOM05D002759 ORTHO05D003290 2.9e-14 82.8 214 31.8
CANSAT11G0811 Cannabis sativa HOM05D002759 ORTHO05D003290 4.9e-14 82.0 141 36.9
Cpa.g.sc148.31 Carica papaya HOM05D002759 ORTHO05D003290 4.9e-14 82.0 139 37.4
Sc19g0000800 Simmondsia chinensis HOM05D002759 ORTHO05D003290 6.4e-14 81.6 218 30.7
Phvul.006G212401 Phaseolus vulgaris HOM05D002759 ORTHO05D003290 8.4e-14 81.3 219 31.5
TPR.G2149 Trifolium pratense HOM05D002759 ORTHO05D003290 4.1e-13 79.0 187 33.7
Ca_00091_v3 Cicer arietinum L. HOM05D002759 ORTHO05D003290 5.4e-13 78.6 186 34.9
Ca_29930_v3 Cicer arietinum L. HOM05D002759 ORTHO05D003290 5.4e-13 78.6 186 34.9
Lsat_1_v5_gn_5_109460 Lactuca sativa HOM05D002759 ORTHO05D003290 7.1e-13 78.2 206 29.1
ATR0661G443 Amborella trichopoda HOM05D002759 ORTHO05D003290 9.2e-13 77.8 191 29.3
Gohir.A01G176601 Gossypium hirsutum HOM05D002759 ORTHO05D003290 9.2e-13 77.8 143 37.1
Lj1g0017629 Lotus japonicus HOM05D002759 ORTHO05D003290 2.1e-12 76.6 201 31.3
PGR042G2027 Punica granatum HOM05D002759 ORTHO05D003290 2.1e-12 76.6 187 30.5
Sopen01g046990 Solanum pennellii HOM05D002759 ORTHO05D003290 6.0e-12 75.1 189 30.2
arahy.Tifrunner.gnm1.ann1.YVTC7U Arachis hypogaea HOM05D002759 ORTHO05D003290 7.8e-12 74.7 185 29.7
BcaB02g09105 Brassica carinata HOM05D002759 ORTHO05D003290 1.0e-11 74.3 136 35.3
CAN.G1352.21 Capsicum annuum HOM05D002759 ORTHO05D003290 1.0e-11 74.3 187 30.5
arahy.Tifrunner.gnm1.ann1.VDG0KY Arachis hypogaea HOM05D002759 ORTHO05D003290 1.3e-11 73.9 185 29.7
AUR62035559 Chenopodium quinoa HOM05D002759 ORTHO05D003290 1.3e-11 73.9 178 30.3
Sed0002146 Sechium edule HOM05D002759 ORTHO05D003290 1.3e-11 73.9 214 31.3
Ah.07g205390 Amaranthus hybridus HOM05D002759 ORTHO05D003290 1.7e-11 73.6 223 27.4
HanXRQChr10g0290421 Helianthus annuus HOM05D002759 ORTHO05D003290 3.0e-11 72.8 185 31.9
Solyc01g104490.3 Solanum lycopersicum HOM05D002759 ORTHO05D003290 3.0e-11 72.8 189 29.6
Peaxi162Scf00011g00138 Petunia axillaris HOM05D002759 ORTHO05D003290 3.9e-11 72.4 186 31.2
ECA234G1843 Erigeron canadensis HOM05D002759 ORTHO05D003290 1.5e-10 70.5 180 33.9
Rhsim11G0131800 Rhododendron simsii HOM05D002759 ORTHO05D003290 1.5e-10 70.5 187 31.0
Nitab4.5_0004005g0050 Nicotiana tabacum HOM05D002759 ORTHO05D003290 1.9e-10 70.1 185 28.6
Nitab4.5_0005539g0020 Nicotiana tabacum HOM05D002759 ORTHO05D003290 5.6e-10 68.6 138 32.6
Hund11642 Selenicereus undatus HOM05D002759 ORTHO05D003290 5.6e-10 68.6 213 26.8
EL10Ac3g05252 Beta vulgaris HOM05D002759 ORTHO05D003290 9.6e-10 67.8 188 28.7
PSO170G2118 Papaver somniferum HOM05D002759 ORTHO05D003290 1.2e-09 67.4 186 28.5
C04p07370 Brassica napus HOM05D002759 ORTHO05D003290 3.6e-09 65.9 136 33.1
Sabra03G0013600 Salix brachista HOM05D002759 ORTHO05D003290 3.6e-09 65.9 202 28.7
BcaC02g11623 Brassica carinata HOM05D002759 ORTHO05D003290 6.2e-09 65.1 138 33.3
BolC4t22942H Brassica oleracea HOM05D002759 ORTHO05D003290 6.2e-09 65.1 138 33.3
AUR62006068 Chenopodium quinoa HOM05D002759 ORTHO05D003290 8.1e-09 64.7 143 29.4
CsaV3_6G032190 Cucumis sativus L. HOM05D002759 ORTHO05D003290 1.1e-08 64.3 187 28.9
PSO528G0214 Papaver somniferum HOM05D002759 ORTHO05D003290 5.2e-08 62.0 141 31.2
MELO3C011463.2 Cucumis melo HOM05D002759 ORTHO05D003290 6.8e-08 61.6 188 29.3
ClCG08G010020 Citrullus lanatus HOM05D002759 ORTHO05D003290 1.5e-07 60.5 187 29.4
Oeu008876.1 Olea europaea HOM05D002759 ORTHO05D003290 2.0e-07 60.1 195 29.2
Zm00001eb193470 Zea mays HOM05D002759 ORTHO05D003290 2.0e-07 60.1 186 24.7
FAN04G0662 Fragaria x ananassa HOM05D002759 ORTHO05D003290 3.8e-06 55.8 39 59.0
C04p13030 Brassica napus HOM05D002759 ORTHO05D003290 8.4e-06 54.7 142 31.7
CARHR230010 Cardamine hirsuta HOM05D002759 ORTHO05D003290 8.4e-06 54.7 41 58.5


User provided reference genes

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