Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G2595 Fragaria x ananassa HOM05D000316 ORTHO05D000374 3.5e-31 137.5 63 100.0
FAN10G0192 Fragaria x ananassa HOM05D000316 ORTHO05D000374 3.9e-30 134.0 63 96.8
FAN20G2756 Fragaria x ananassa HOM05D000316 ORTHO05D000374 2.8e-12 74.7 49 81.6
FvH4_2g31860 Fragaria vesca HOM05D000316 ORTHO05D000374 4.8e-12 73.9 44 84.1
FAN24G0007 Fragaria x ananassa HOM05D000316 ORTHO05D000374 4.8e-12 73.9 44 84.1
Nn8g38860 Nelumbo nucifera HOM05D000316 ORTHO05D000374 6.3e-12 73.6 49 79.6
Eucgr.C03050 Eucalyptus grandis HOM05D000316 ORTHO05D000374 1.8e-11 72.0 49 77.6
Potri.006G228900 Populus trichocarpa HOM05D000316 ORTHO05D000374 2.4e-11 71.6 49 77.6
QL02p001155 Quercus lobata HOM05D000316 ORTHO05D000374 2.4e-11 71.6 49 77.6
Duzib187G1125 Durio zibethinus HOM05D000316 ORTHO05D000374 6.9e-11 70.1 49 75.5
Thecc.09G054000 Theobroma cacao HOM05D000316 ORTHO05D000374 6.9e-11 70.1 49 75.5
CiPaw.15G038800 Carya illinoinensis HOM05D000316 ORTHO05D000374 9.1e-11 69.7 49 75.5
Cc08_g10600 Coffea canephora HOM05D000316 ORTHO05D000374 9.1e-11 69.7 49 75.5
Ciclev10008876m.g Citrus clementina HOM05D000316 ORTHO05D000374 1.2e-10 69.3 49 75.5
Haze_18181 Corylus avellana HOM05D000316 ORTHO05D000374 1.2e-10 69.3 48 77.1
Haze_18188 Corylus avellana HOM05D000316 ORTHO05D000374 1.2e-10 69.3 48 77.1
Gohir.A06G089800 Gossypium hirsutum HOM05D000316 ORTHO05D000374 1.2e-10 69.3 44 77.3
Gohir.D06G087400 Gossypium hirsutum HOM05D000316 ORTHO05D000374 1.2e-10 69.3 44 77.3
Manes.16G080700 Manihot esculenta HOM05D000316 ORTHO05D000374 1.2e-10 69.3 49 75.5
GSVIVG01035404001 Vitis vinifera HOM05D000316 ORTHO05D000374 1.2e-10 69.3 49 75.5
Ciclev10010334m.g Citrus clementina HOM05D000316 ORTHO05D000374 2.0e-10 68.6 49 75.5
Oeu047113.1 Olea europaea HOM05D000316 ORTHO05D000374 2.0e-10 68.6 49 75.5
Prupe.1G411800 Prunus persica HOM05D000316 ORTHO05D000374 2.0e-10 68.6 49 75.5
Hund19450 Selenicereus undatus HOM05D000316 ORTHO05D000374 2.0e-10 68.6 49 73.5
Dinv27987 Davidia involucrata HOM05D000316 ORTHO05D000374 2.6e-10 68.2 49 71.4
CSS0010336 Camellia sinensis var. sinensis HOM05D000316 ORTHO05D000374 3.4e-10 67.8 49 73.5
CSS0022838 Camellia sinensis var. sinensis HOM05D042287 ORTHO05D000106 3.4e-10 67.8 53 69.8
COL.COLO4_21060 Corchorus olitorius HOM05D000316 ORTHO05D000374 3.4e-10 67.8 49 71.4
Gorai.010G100900 Gossypium raimondii HOM05D000316 ORTHO05D000374 3.4e-10 67.8 44 75.0
MD08G1061800 Malus domestica HOM05D000316 ORTHO05D000374 4.5e-10 67.4 49 73.5
TWI34G0056 Tripterygium wilfordii HOM05D000316 ORTHO05D000374 4.5e-10 67.4 49 73.5
EL10Ac2g03882 Beta vulgaris HOM05D000316 ORTHO05D000374 5.9e-10 67.0 49 71.4
MBI01_g09938_MAGBIO Magnolia biondii HOM05D000316 ORTHO05D000374 5.9e-10 67.0 44 75.0
MD15G1059900 Malus domestica HOM05D000316 ORTHO05D000374 7.7e-10 66.6 44 75.0
A04p20200 Brassica napus HOM05D000316 ORTHO05D000374 1.3e-09 65.9 44 70.5
Carub.0004s0591 Capsella rubella HOM05D000316 ORTHO05D000374 1.3e-09 65.9 44 70.5
FAN27G1810 Fragaria x ananassa HOM05D000316 ORTHO05D000374 1.7e-09 65.5 49 77.6
Lj8C540G2 Lonicera japonica HOM05D000316 ORTHO05D000374 1.7e-09 65.5 43 74.4
Lj8C546G3 Lonicera japonica HOM05D000316 ORTHO05D000374 1.7e-09 65.5 43 74.4
Actinidia14717 Actinidia chinensis HOM05D000316 ORTHO05D000374 2.2e-09 65.1 49 69.4
BcaC02g08311 Brassica carinata HOM05D000316 ORTHO05D000374 2.2e-09 65.1 44 70.5
C04p55910 Brassica napus HOM05D000316 ORTHO05D000374 2.2e-09 65.1 44 70.5
BolC4t27124H Brassica oleracea HOM05D000316 ORTHO05D000374 2.2e-09 65.1 44 70.5
BraA04t17599Z Brassica rapa HOM05D000316 ORTHO05D000374 2.2e-09 65.1 44 70.5
ATR0749G097 Amborella trichopoda HOM05D000316 ORTHO05D000374 3.8e-09 64.3 44 70.5
AT2G26100 Arabidopsis thaliana HOM05D000316 ORTHO05D000374 3.8e-09 64.3 44 70.5
BcaB06g29610 Brassica carinata HOM05D000316 ORTHO05D000374 3.8e-09 64.3 44 68.2
Thhalv10002018m.g Eutrema salsugineum HOM05D000316 ORTHO05D000374 3.8e-09 64.3 44 70.5
Potri.018G053150 Populus trichocarpa HOM05D000316 ORTHO05D000374 3.8e-09 64.3 48 72.9
Sp4g05980 Schrenkiella parvula HOM05D000316 ORTHO05D000374 3.8e-09 64.3 44 70.5
Sc09g0009830 Simmondsia chinensis HOM05D000316 ORTHO05D000374 3.8e-09 64.3 48 70.8
THA.LOC104803794 Tarenaya hassleriana HOM05D000316 ORTHO05D000374 3.8e-09 64.3 44 70.5
Sabra06G0177400 Salix brachista HOM05D000316 ORTHO05D000374 5.0e-09 63.9 42 78.6
AL4G18250 Arabidopsis lyrata HOM05D000316 ORTHO05D000374 6.5e-09 63.5 44 68.2
RcHm_v2.0_Chr6g0310931 Rosa chinensis HOM05D000316 ORTHO05D000374 8.5e-09 63.2 49 69.4
PGR044G0479 Punica granatum HOM05D000316 ORTHO05D000374 1.1e-08 62.8 44 63.6
CARHR114820 Cardamine hirsuta HOM05D000316 ORTHO05D000374 1.4e-08 62.4 44 65.9
AUR62009148 Chenopodium quinoa HOM05D000316 ORTHO05D000374 1.4e-08 62.4 49 63.3
AUR62039112 Chenopodium quinoa HOM05D000316 ORTHO05D000374 1.4e-08 62.4 49 63.3
CDE04G1597 Ceratophyllum demersum HOM05D000316 ORTHO05D000374 1.9e-08 62.0 49 67.3
Actinidia18184 Actinidia chinensis HOM05D000316 ORTHO05D000374 7.2e-08 60.1 46 71.7
CSS0014845 Camellia sinensis var. sinensis HOM05D000014 ORTHO05D000016 7.2e-08 60.1 42 69.0
Eucgr.F03260 Eucalyptus grandis HOM05D000316 ORTHO05D000374 1.6e-07 58.9 44 59.1
CsaV3_4G033200 Cucumis sativus L. HOM05D000316 ORTHO05D000374 2.1e-07 58.5 44 59.1
Oeu005386.1 Olea europaea HOM05D000316 ORTHO05D000374 2.7e-07 58.2 42 64.3
CiPaw.11G161700 Carya illinoinensis HOM05D000316 ORTHO05D000374 3.6e-07 57.8 44 61.4
Sed0015504 Sechium edule HOM05D000316 ORTHO05D000374 4.6e-07 57.4 44 61.4
Cpa.g.sc97.96 Carica papaya HOM05D000316 ORTHO05D000374 6.1e-07 57.0 44 61.4
Glyma.06G230600 Glycine max HOM05D000316 ORTHO05D000374 6.1e-07 57.0 44 61.4
TWI38G2312 Tripterygium wilfordii HOM05D000316 ORTHO05D000374 6.1e-07 57.0 44 59.1
GSVIVG01014218001 Vitis vinifera HOM05D000316 ORTHO05D000374 6.1e-07 57.0 44 59.1
AL1G61720 Arabidopsis lyrata HOM05D000316 ORTHO05D000374 7.9e-07 56.6 44 59.1
AT1G53290 Arabidopsis thaliana HOM05D000316 ORTHO05D000374 7.9e-07 56.6 44 59.1
CANSAT35G1742 Cannabis sativa HOM05D000316 ORTHO05D000374 7.9e-07 56.6 44 59.1
CARHR043520 Cardamine hirsuta HOM05D000316 ORTHO05D000374 7.9e-07 56.6 44 59.1
Thhalv10011624m.g Eutrema salsugineum HOM05D000316 ORTHO05D000374 7.9e-07 56.6 44 59.1
Glyma.12G160700 Glycine max HOM05D000316 ORTHO05D000374 7.9e-07 56.6 44 61.4
TAR627G0939 Trochodendron aralioides HOM05D000316 ORTHO05D000374 7.9e-07 56.6 44 61.4
Lj3g0021229 Lotus japonicus HOM05D000316 ORTHO05D000374 1.0e-06 56.2 44 59.1
Medtr8g463930 Medicago truncatula HOM05D000316 ORTHO05D000374 1.0e-06 56.2 44 59.1
Aa31LG5G9670 Aethionema arabicum HOM05D000316 ORTHO05D000374 1.4e-06 55.8 41 68.3
CSS0012914 Camellia sinensis var. sinensis HOM05D000316 ORTHO05D000374 1.4e-06 55.8 44 59.1
MD03G1241400 Malus domestica HOM05D000316 ORTHO05D000374 1.4e-06 55.8 44 59.1
MD11G1260700 Malus domestica HOM05D000316 ORTHO05D000374 1.4e-06 55.8 44 59.1
HPP92_024724 Vanilla planifolia HOM05D000316 ORTHO05D000374 1.4e-06 55.8 44 59.1
BcaC08g44070 Brassica carinata HOM05D000316 ORTHO05D000374 1.8e-06 55.5 44 56.8
Duzib213G0661 Durio zibethinus HOM05D000316 ORTHO05D000374 1.8e-06 55.5 44 59.1
Hma1.2p1_0416F.1_g148750 Hydrangea macrophylla HOM05D000316 ORTHO05D000374 1.8e-06 55.5 44 56.8
Lalb_Chr01g0006781 Lupinus albus HOM05D000316 ORTHO05D000374 1.8e-06 55.5 44 59.1
Os06g0156900 Oryza sativa ssp. japonica HOM05D000316 ORTHO05D000374 1.8e-06 55.5 44 59.1
Potri.001G392700 Populus trichocarpa HOM05D000316 ORTHO05D000374 1.8e-06 55.5 44 59.1
Thecc.07G107800 Theobroma cacao HOM05D000316 ORTHO05D000374 1.8e-06 55.5 44 59.1
Zm00001eb271150 Zea mays HOM05D000316 ORTHO05D000374 1.8e-06 55.5 44 59.1
Zm00001eb376520 Zea mays HOM05D000316 ORTHO05D000374 1.8e-06 55.5 44 59.1
Aa31LG8G2160 Aethionema arabicum HOM05D000316 ORTHO05D000374 2.3e-06 55.1 42 59.5
arahy.Tifrunner.gnm1.ann1.M5LR6N Arachis hypogaea HOM05D000316 ORTHO05D000374 2.3e-06 55.1 42 59.5
A05p18450 Brassica napus HOM05D000316 ORTHO05D000374 2.3e-06 55.1 49 51.0
BraA05t20735Z Brassica rapa HOM05D000316 ORTHO05D000374 2.3e-06 55.1 49 51.0
Carub.0001s4247 Capsella rubella HOM05D000316 ORTHO05D000374 2.3e-06 55.1 44 56.8
Cc05_g11260 Coffea canephora HOM05D000316 ORTHO05D000374 2.3e-06 55.1 42 59.5
Migut.H01987 Erythranthe guttata HOM05D000316 ORTHO05D000374 2.3e-06 55.1 44 59.1
Eucgr.F01224 Eucalyptus grandis HOM05D000316 ORTHO05D000374 2.3e-06 55.1 44 59.1
Gohir.A01G056500 Gossypium hirsutum HOM05D000316 ORTHO05D000374 2.3e-06 55.1 44 56.8
Gohir.D01G043000 Gossypium hirsutum HOM05D000316 ORTHO05D000374 2.3e-06 55.1 44 56.8
Gorai.002G062000 Gossypium raimondii HOM05D000316 ORTHO05D000374 2.3e-06 55.1 44 56.8
HanXRQChr12g0373461 Helianthus annuus HOM05D000316 ORTHO05D000374 2.3e-06 55.1 44 56.8
Lalb_Chr01g0016631 Lupinus albus HOM05D000316 ORTHO05D000374 2.3e-06 55.1 44 56.8
Nn1g09073 Nelumbo nucifera HOM05D000316 ORTHO05D000374 2.3e-06 55.1 44 59.1
Prupe.4G167600 Prunus persica HOM05D000316 ORTHO05D000374 2.3e-06 55.1 44 56.8
PGR031G2256 Punica granatum HOM05D000316 ORTHO05D000374 2.3e-06 55.1 44 54.5
TAR626G0009 Trochodendron aralioides HOM05D000316 ORTHO05D000374 2.3e-06 55.1 42 61.9
Actinidia12565 Actinidia chinensis HOM05D000316 ORTHO05D000374 3.0e-06 54.7 44 56.8
MSTRG.12871 Avicennia marina HOM05D000316 ORTHO05D000374 3.0e-06 54.7 44 59.1
MELO3C025633.2 Cucumis melo HOM05D000316 ORTHO05D000374 3.0e-06 54.7 44 56.8
Sc03g0010470 Simmondsia chinensis HOM05D000316 ORTHO05D000374 3.0e-06 54.7 44 59.1
CDE06G0135 Ceratophyllum demersum HOM05D000316 ORTHO05D000374 3.9e-06 54.3 34 73.5
Gohir.A04G041100 Gossypium hirsutum HOM05D000316 ORTHO05D000374 3.9e-06 54.3 44 59.1
PSO063G7476 Papaver somniferum HOM05D000316 ORTHO05D000374 3.9e-06 54.3 44 59.1
PSO782G2349 Papaver somniferum HOM05D000316 ORTHO05D000374 3.9e-06 54.3 44 59.1
RcHm_v2.0_Chr5g0031301 Rosa chinensis HOM05D000316 ORTHO05D000374 3.9e-06 54.3 44 56.8
SEGI_26895 Sequoiadendron giganteum HOM05D000316 ORTHO05D000374 3.9e-06 54.3 42 59.5
unitig_699.g19236 Utricularia gibba HOM05D000316 ORTHO05D000374 3.9e-06 54.3 44 59.1
C06p14650 Brassica napus HOM05D000316 ORTHO05D000374 5.1e-06 53.9 42 57.1
BolC6t36647H Brassica oleracea HOM05D000316 ORTHO05D000374 5.1e-06 53.9 42 57.1
CiPaw.12G114300 Carya illinoinensis HOM05D000316 ORTHO05D000374 5.1e-06 53.9 44 56.8
Dinv14977 Davidia involucrata HOM05D000316 ORTHO05D000374 5.1e-06 53.9 44 56.8
Gohir.D05G342000 Gossypium hirsutum HOM05D000316 ORTHO05D000374 5.1e-06 53.9 44 59.1
Gorai.009G368400 Gossypium raimondii HOM05D000316 ORTHO05D000374 5.1e-06 53.9 44 59.1
Lj3g0020375 Lotus japonicus HOM05D000316 ORTHO05D000374 5.1e-06 53.9 44 56.8
Medtr2g078030 Medicago truncatula HOM05D000316 ORTHO05D000374 5.1e-06 53.9 44 56.8
Psat5g239200 Pisum sativum HOM05D000316 ORTHO05D000374 5.1e-06 53.9 44 56.8
Sp1g39870 Schrenkiella parvula HOM05D000316 ORTHO05D000374 5.1e-06 53.9 44 52.3
SEGI_12623 Sequoiadendron giganteum HOM05D000316 ORTHO05D000374 5.1e-06 53.9 44 59.1
Cfa019582 Carpinus fangiana HOM05D000316 ORTHO05D000374 6.7e-06 53.5 44 56.8
AUR62019522 Chenopodium quinoa HOM05D000316 ORTHO05D000374 6.7e-06 53.5 44 56.8
AUR62036115 Chenopodium quinoa HOM05D000316 ORTHO05D000374 6.7e-06 53.5 44 56.8
DCAR_007727 Daucus carota HOM05D000316 ORTHO05D000374 6.7e-06 53.5 48 60.4
Dinv18352 Davidia involucrata HOM05D000316 ORTHO05D000374 6.7e-06 53.5 44 56.8
ECA234G1473 Erigeron canadensis HOM05D000316 ORTHO05D000374 6.7e-06 53.5 44 54.5
Manes.15G092900 Manihot esculenta HOM05D000316 ORTHO05D000374 6.7e-06 53.5 44 59.1
Psat4g137280 Pisum sativum HOM05D000316 ORTHO05D000374 6.7e-06 53.5 42 57.1
Potri.011G111700 Populus trichocarpa HOM05D000316 ORTHO05D000374 6.7e-06 53.5 44 56.8
Sabra16G0257600 Salix brachista HOM05D000316 ORTHO05D000374 6.7e-06 53.5 44 56.8
Solyc10g007200.3 Solanum lycopersicum HOM05D000316 ORTHO05D000374 6.7e-06 53.5 44 56.8
Sopen10g003280 Solanum pennellii HOM05D000316 ORTHO05D000374 6.7e-06 53.5 44 56.8
PGSC0003DMG400021307 Solanum tuberosum HOM05D000316 ORTHO05D000374 6.7e-06 53.5 44 56.8
VMungo1127G1800 Vigna mungo HOM05D000316 ORTHO05D000374 6.7e-06 53.5 44 56.8
Aqoxy1G03154 Aquilegia oxysepala HOM05D000316 ORTHO05D000374 8.8e-06 53.1 44 54.5
FvH4_3g18550 Fragaria vesca HOM05D000316 ORTHO05D000374 8.8e-06 53.1 44 54.5


User provided reference genes

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