Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G2544 Fragaria x ananassa HOM05D005214 ORTHO05D005861 1.0e-110 403.3 191 100.0
FAN14G2055 Fragaria x ananassa HOM05D005214 ORTHO05D005861 5.1e-65 251.5 229 61.6
FvH4_6g06410 Fragaria vesca HOM05D005214 ORTHO05D005861 6.7e-65 251.1 229 61.6
FAN06G5075 Fragaria x ananassa HOM05D000527 ORTHO05D006565 2.8e-55 219.2 197 62.4
FAN06G3538 Fragaria x ananassa HOM05D000527 ORTHO05D006565 1.2e-50 203.8 179 64.2
FAN03G2099 Fragaria x ananassa HOM05D000527 ORTHO05D006565 3.0e-41 172.6 114 77.2
FAN05G5708 Fragaria x ananassa HOM05D005214 ORTHO05D005861 6.3e-39 164.9 129 69.8
FAN02G3954 Fragaria x ananassa HOM05D005214 ORTHO05D005861 8.2e-39 164.5 129 69.8
FAN01G2115 Fragaria x ananassa HOM05D000527 ORTHO05D006565 4.5e-37 158.7 130 63.1
QL03p011667 Quercus lobata HOM05D005214 ORTHO05D005861 5.0e-20 102.1 202 35.6
QL03p021693 Quercus lobata HOM05D005214 ORTHO05D005861 5.0e-20 102.1 197 36.5
FvH4_6g06420 Fragaria vesca HOM05D005214 ORTHO05D005861 3.2e-19 99.4 229 34.1
Prupe.6G322200 Prunus persica HOM05D005214 ORTHO05D005861 9.4e-19 97.8 228 32.5
FAN17G2752 Fragaria x ananassa HOM05D005214 ORTHO05D005861 6.1e-18 95.1 162 40.1
FvH4_7g05300 Fragaria vesca HOM05D005214 ORTHO05D005861 8.8e-17 91.3 217 33.6
CANSAT54G2509 Cannabis sativa HOM05D005214 ORTHO05D005861 1.2e-16 90.9 171 36.8
RcHm_v2.0_Chr3g0455481 Rosa chinensis HOM05D005214 ORTHO05D005861 1.5e-16 90.5 228 33.3
MSTRG.27985 Avicennia marina HOM05D005214 ORTHO05D005861 2.6e-16 89.7 166 36.7
Manes.08G119000 Manihot esculenta HOM05D005214 ORTHO05D005861 2.6e-16 89.7 201 34.3
GSVIVG01031122001 Vitis vinifera HOM05D005214 ORTHO05D005861 2.6e-16 89.7 177 36.2
MD12G1215600 Malus domestica HOM05D005214 ORTHO05D005861 3.3e-16 89.4 212 32.5
Sabra13G0021100 Salix brachista HOM05D005214 ORTHO05D005861 3.3e-16 89.4 165 37.0
Thecc.05G311500 Theobroma cacao HOM05D005214 ORTHO05D005861 4.4e-16 89.0 196 32.7
Medtr7g113170 Medicago truncatula HOM05D005214 ORTHO05D005861 7.5e-16 88.2 137 42.3
Hma1.2p1_1212F.1_g267370 Hydrangea macrophylla HOM05D005214 ORTHO05D005861 1.3e-15 87.4 234 30.8
Eucgr.H04504 Eucalyptus grandis HOM05D005214 ORTHO05D005861 1.7e-15 87.0 208 32.2
Glyma.19G234200 Glycine max HOM05D005214 ORTHO05D005861 1.7e-15 87.0 206 35.9
Potri.013G018300 Populus trichocarpa HOM05D005214 ORTHO05D005861 1.7e-15 87.0 189 34.9
Actinidia05683 Actinidia chinensis HOM05D005214 ORTHO05D005861 2.8e-15 86.3 170 35.9
AL6G39370 Arabidopsis lyrata HOM05D005214 ORTHO05D005861 2.8e-15 86.3 201 33.3
Cfa006617 Carpinus fangiana HOM05D005214 ORTHO05D005861 3.7e-15 85.9 150 38.7
SGA_v2.0_scaffold80G25806 Striga asiatica HOM05D005214 ORTHO05D005861 3.7e-15 85.9 206 31.6
Aa31LG11G9400 Aethionema arabicum HOM05D005214 ORTHO05D005861 4.8e-15 85.5 199 33.2
ECA236G2130 Erigeron canadensis HOM05D005214 ORTHO05D005861 6.3e-15 85.1 160 37.5
vmacro04966 Vaccinium macrocarpon HOM05D005214 ORTHO05D005861 6.3e-15 85.1 201 34.3
AT5G27660 Arabidopsis thaliana HOM05D005214 ORTHO05D005861 8.2e-15 84.7 239 30.1
arahy.Tifrunner.gnm1.ann1.0P9F65 Arachis hypogaea HOM05D005214 ORTHO05D005861 8.2e-15 84.7 165 36.4
Nn8g40789 Nelumbo nucifera HOM05D005214 ORTHO05D005861 8.2e-15 84.7 162 37.7
Lj1g0009363 Lotus japonicus HOM05D005214 ORTHO05D005861 1.1e-14 84.3 170 33.5
arahy.Tifrunner.gnm1.ann1.P1V9IM Arachis hypogaea HOM05D005214 ORTHO05D005861 1.8e-14 83.6 165 35.8
Carub.0006s2493 Capsella rubella HOM05D005214 ORTHO05D005861 1.8e-14 83.6 201 31.8
Thhalv10004245m.g Eutrema salsugineum HOM05D005214 ORTHO05D005861 3.1e-14 82.8 177 34.5
Gorai.004G240000 Gossypium raimondii HOM05D005214 ORTHO05D005861 3.1e-14 82.8 201 32.3
HanXRQChr11g0339491 Helianthus annuus HOM05D005214 ORTHO05D005861 3.1e-14 82.8 120 42.5
MD04G1201900 Malus domestica HOM05D005214 ORTHO05D005861 3.1e-14 82.8 210 32.9
Oeu040762.1 Olea europaea HOM05D005214 ORTHO05D005861 3.1e-14 82.8 120 44.2
Dinv40313 Davidia involucrata HOM05D005214 ORTHO05D005861 4.1e-14 82.4 201 30.8
Haze_04156 Corylus avellana HOM05D005214 ORTHO05D007291 5.3e-14 82.0 146 38.4
TWI12G0067 Tripterygium wilfordii HOM05D005214 ORTHO05D005861 5.3e-14 82.0 167 37.7
CSS0000343 Camellia sinensis var. sinensis HOM05D005214 ORTHO05D005861 7.0e-14 81.6 201 33.3
CiPaw.07G020400 Carya illinoinensis HOM05D005214 ORTHO05D005861 7.0e-14 81.6 192 34.4
Migut.N01980 Erythranthe guttata HOM05D005214 ORTHO05D005861 7.0e-14 81.6 204 31.9
Migut.N02017 Erythranthe guttata HOM05D005214 ORTHO05D005861 7.0e-14 81.6 223 30.5
MBI07_g30867_MAGBIO Magnolia biondii HOM05D005214 ORTHO05D005861 9.1e-14 81.3 159 36.5
BcaNung04538 Brassica carinata HOM05D005214 ORTHO05D005861 1.2e-13 80.9 200 30.5
C07p40960 Brassica napus HOM05D005214 ORTHO05D005861 1.2e-13 80.9 200 30.5
BolC7t44627H Brassica oleracea HOM05D005214 ORTHO05D005861 1.2e-13 80.9 200 30.5
Ca_05806_v3 Cicer arietinum L. HOM05D005214 ORTHO05D005861 1.2e-13 80.9 120 42.5
DCAR_022150 Daucus carota HOM05D005214 ORTHO05D005861 1.2e-13 80.9 94 50.0
THA.LOC104802800 Tarenaya hassleriana HOM05D005214 ORTHO05D005861 2.0e-13 80.1 203 33.5
Lsat_1_v5_gn_9_87421 Lactuca sativa HOM05D005214 ORTHO05D005861 2.7e-13 79.7 120 41.7
Lj9A119G25 Lonicera japonica HOM05D005214 ORTHO05D005861 2.7e-13 79.7 162 35.2
Cpa.g.sc48.81 Carica papaya HOM05D005214 ORTHO05D005861 3.5e-13 79.3 199 32.2
CsaV3_2G006580 Cucumis sativus L. HOM05D005214 ORTHO05D005861 3.5e-13 79.3 148 39.2
Phvul.006G090500 Phaseolus vulgaris HOM05D005214 ORTHO05D005861 3.5e-13 79.3 162 37.0
SalBow3G0885 Salvia bowleyana HOM05D005214 ORTHO05D005861 3.5e-13 79.3 191 33.5
Gohir.A08G209100 Gossypium hirsutum HOM05D005214 ORTHO05D005861 4.5e-13 79.0 201 31.3
BcaNung04541 Brassica carinata HOM05D005214 ORTHO05D005861 5.9e-13 78.6 177 31.6
Haze_04157 Corylus avellana HOM05D005214 ORTHO05D005861 5.9e-13 78.6 121 41.3
Hma1.2p1_1374F.1_g278860 Hydrangea macrophylla HOM05D005214 ORTHO05D005861 5.9e-13 78.6 203 33.5
Ah.06g189700 Amaranthus hybridus HOM05D005214 ORTHO05D005861 1.0e-12 77.8 125 40.8
Hund07090 Selenicereus undatus HOM05D005214 ORTHO05D005861 1.0e-12 77.8 165 35.2
Duzib128G1190 Durio zibethinus HOM05D005214 ORTHO05D005861 1.3e-12 77.4 120 42.5
Rhsim07G0186700 Rhododendron simsii HOM05D005214 ORTHO05D005861 1.3e-12 77.4 120 40.0
VMungo0540G0352 Vigna mungo HOM05D005214 ORTHO05D005861 1.3e-12 77.4 222 33.3
Lalb_Chr18g0045711 Lupinus albus HOM05D005214 ORTHO05D005861 1.7e-12 77.0 196 31.6
TPR.G33205 Trifolium pratense HOM05D005214 ORTHO05D005861 1.7e-12 77.0 152 36.2
TWI12G0218 Tripterygium wilfordii HOM05D005214 ORTHO05D005861 1.7e-12 77.0 120 40.0
TAR362G1097 Trochodendron aralioides HOM05D005214 ORTHO05D005861 1.7e-12 77.0 174 33.9
Sp2g20820 Schrenkiella parvula HOM05D005214 ORTHO05D005861 2.2e-12 76.6 190 30.5
Lj1g0025562 Lotus japonicus HOM05D005214 ORTHO05D005861 2.9e-12 76.3 120 42.5
CSS0021432 Camellia sinensis var. sinensis HOM05D005214 ORTHO05D005861 3.8e-12 75.9 238 29.8
COL.COLO4_10501 Corchorus olitorius HOM05D005214 ORTHO05D005861 5.0e-12 75.5 120 39.2
A06p37390 Brassica napus HOM05D005214 ORTHO05D005861 6.5e-12 75.1 193 30.1
BraA06t26663Z Brassica rapa HOM05D005214 ORTHO05D005861 6.5e-12 75.1 188 30.3
MELO3C004228.2 Cucumis melo HOM05D005214 ORTHO05D005861 6.5e-12 75.1 120 41.7
Os11g0246600 Oryza sativa ssp. japonica HOM05D005214 ORTHO05D005861 8.5e-12 74.7 155 34.8
PSO541G2582 Papaver somniferum HOM05D005214 ORTHO05D005861 8.5e-12 74.7 94 46.8
Aqoxy2G03015 Aquilegia oxysepala HOM05D005214 ORTHO05D005861 1.1e-11 74.3 198 31.8
AUR62000783 Chenopodium quinoa HOM05D005214 ORTHO05D005861 1.1e-11 74.3 112 42.0
EL10Ac4g09934 Beta vulgaris HOM05D005214 ORTHO05D005861 1.5e-11 73.9 88 48.9
CDE09G0722 Ceratophyllum demersum HOM05D005214 ORTHO05D005861 1.5e-11 73.9 120 38.3
Sed0006034 Sechium edule HOM05D005214 ORTHO05D005861 1.5e-11 73.9 120 40.0
Sc06g0004100 Simmondsia chinensis HOM05D005214 ORTHO05D005861 2.5e-11 73.2 94 43.6
Atru.chr2.17 Acer truncatum HOM05D005214 ORTHO05D005861 3.2e-11 72.8 120 38.3
PSO675G4608 Papaver somniferum HOM05D005214 ORTHO05D005861 4.2e-11 72.4 120 38.3
CARHR186180 Cardamine hirsuta HOM05D005214 ORTHO05D005861 5.5e-11 72.0 94 42.6
Cc00_g10460 Coffea canephora HOM05D005214 ORTHO05D005861 5.5e-11 72.0 120 39.2
Nitab4.5_0002144g0030 Nicotiana tabacum HOM05D005214 ORTHO05D005861 5.5e-11 72.0 160 35.6
TWI12G0439 Tripterygium wilfordii HOM05D005214 ORTHO05D005861 5.5e-11 72.0 166 34.3
TWI12G1447 Tripterygium wilfordii HOM05D005214 ORTHO05D005861 5.5e-11 72.0 167 33.5
Thecc.05G311600 Theobroma cacao HOM05D005214 ORTHO05D005861 1.2e-10 70.9 120 36.7
CAN.G619.10 Capsicum annuum HOM05D005214 ORTHO05D005861 2.1e-10 70.1 120 40.8
Ciclev10001167m.g Citrus clementina HOM05D005214 ORTHO05D005861 4.7e-10 68.9 160 32.5
Gohir.D08G226000 Gossypium hirsutum HOM05D005214 ORTHO05D005861 4.7e-10 68.9 102 41.2
ClCG02G015500 Citrullus lanatus HOM05D005214 ORTHO05D005861 1.0e-09 67.8 144 33.3
Rhsim07G0186800 Rhododendron simsii HOM05D005214 ORTHO05D005861 3.0e-09 66.2 94 43.6
CSS0006401 Camellia sinensis var. sinensis HOM05D005214 ORTHO05D005861 4.0e-09 65.9 131 35.1
ATR0743G060 Amborella trichopoda HOM05D005214 ORTHO05D005861 5.2e-09 65.5 94 41.5
HPP92_004549 Vanilla planifolia HOM05D005214 ORTHO05D005861 5.2e-09 65.5 98 37.8
TWI12G0716 Tripterygium wilfordii HOM05D005214 ORTHO05D005861 6.8e-09 65.1 159 32.1
FAN16G0447 Fragaria x ananassa HOM05D005214 ORTHO05D005861 2.0e-08 63.5 129 35.7
unitig_699.g19247 Utricularia gibba HOM05D005214 ORTHO05D005861 3.4e-08 62.8 172 30.2
CAN.G394.38 Capsicum annuum HOM05D005214 ORTHO05D005861 1.3e-07 60.8 196 29.6
Zm00001eb168260 Zea mays HOM05D005214 ORTHO05D005861 1.8e-06 57.0 94 38.3


User provided reference genes

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