Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G2518 Fragaria x ananassa HOM05D001826 ORTHO05D018157 1.4e-108 396.4 209 100.0
FAN10G1065 Fragaria x ananassa HOM05D001826 ORTHO05D004184 1.7e-93 346.3 230 84.3
FvH4_7g13660 Fragaria vesca HOM05D001826 ORTHO05D004184 7.7e-91 337.4 230 83.5
FAN03G3317 Fragaria x ananassa HOM05D001826 ORTHO05D004184 1.5e-89 333.2 230 82.6
FAN01G1586 Fragaria x ananassa HOM05D001826 ORTHO05D004184 1.4e-87 326.6 230 81.7
RcHm_v2.0_Chr1g0353741 Rosa chinensis HOM05D001826 ORTHO05D004184 3.0e-79 298.9 226 76.5
FAN10G2366 Fragaria x ananassa HOM05D001826 ORTHO05D018157 5.4e-68 261.5 175 84.0
Prupe.2G162700 Prunus persica HOM05D001826 ORTHO05D004184 1.5e-65 253.4 222 66.2
MD07G1141400 Malus domestica HOM05D001826 ORTHO05D004184 2.0e-62 243.0 222 64.0
MD01G1053700 Malus domestica HOM05D001826 ORTHO05D004184 4.9e-61 238.4 222 61.7
CiPaw.02G028500 Carya illinoinensis HOM05D001826 ORTHO05D004184 1.4e-44 183.7 220 56.8
QL08p049532 Quercus lobata HOM05D001826 ORTHO05D004184 3.2e-44 182.6 228 54.4
MELO3C006129.2 Cucumis melo HOM05D001826 ORTHO05D004184 2.1e-43 179.9 154 66.9
CANSAT56G1923 Cannabis sativa HOM05D001826 ORTHO05D004184 3.5e-43 179.1 216 54.6
ClCG05G001700 Citrullus lanatus HOM05D001826 ORTHO05D004184 6.0e-43 178.3 153 68.6
CsaV3_3G009090 Cucumis sativus L. HOM05D001826 ORTHO05D004184 6.6e-42 174.9 154 66.2
CiPaw.01G057800 Carya illinoinensis HOM05D001826 ORTHO05D004184 8.7e-42 174.5 216 55.6
COL.COLO4_12675 Corchorus olitorius HOM05D001826 ORTHO05D004184 7.3e-41 171.4 218 50.5
Haze_15465 Corylus avellana HOM05D001826 ORTHO05D004184 4.8e-40 168.7 155 65.8
Lj3g0020333 Lotus japonicus HOM05D001826 ORTHO05D004184 6.9e-39 164.9 213 51.6
Ciclev10018563m.g Citrus clementina HOM05D001826 ORTHO05D004184 1.5e-38 163.7 222 48.2
Sed0024442 Sechium edule HOM05D001826 ORTHO05D004184 2.0e-38 163.3 153 65.4
Thecc.01G363300 Theobroma cacao HOM05D001826 ORTHO05D004184 2.0e-38 163.3 205 52.7
CSS0017008 Camellia sinensis var. sinensis HOM05D001826 ORTHO05D004184 7.6e-38 161.4 176 57.4
Cpa.g.sc18.224 Carica papaya HOM05D001826 ORTHO05D004184 7.6e-38 161.4 209 51.2
Duzib138G1216 Durio zibethinus HOM05D001826 ORTHO05D004184 9.9e-38 161.0 206 51.9
Sed0005198 Sechium edule HOM05D001826 ORTHO05D004184 3.8e-37 159.1 156 64.1
Medtr8g031550 Medicago truncatula HOM05D001826 ORTHO05D004184 4.9e-37 158.7 204 52.0
Sabra14G0058600 Salix brachista HOM05D001826 ORTHO05D004184 8.4e-37 157.9 160 61.2
Glyma.09G262000 Glycine max HOM05D001826 ORTHO05D004184 1.4e-36 157.1 229 47.2
CSS0031422 Camellia sinensis var. sinensis HOM05D001826 ORTHO05D004184 2.4e-36 156.4 229 47.6
CSS0033058 Camellia sinensis var. sinensis HOM05D001826 ORTHO05D004184 2.4e-36 156.4 176 56.2
Potri.002G157200 Populus trichocarpa HOM05D001826 ORTHO05D004184 4.2e-36 155.6 158 59.5
Gorai.008G118000 Gossypium raimondii HOM05D001826 ORTHO05D004184 5.4e-36 155.2 209 50.7
TAR374G0002 Trochodendron aralioides HOM05D001826 ORTHO05D004184 1.2e-35 154.1 232 45.7
Gohir.D12G108900 Gossypium hirsutum HOM05D001826 ORTHO05D004184 1.6e-35 153.7 209 50.2
TPR.G37729 Trifolium pratense HOM05D001826 ORTHO05D004184 1.6e-35 153.7 222 49.1
Actinidia33430 Actinidia chinensis HOM05D001826 ORTHO05D004184 2.1e-35 153.3 167 58.1
arahy.Tifrunner.gnm1.ann1.SLD8LW Arachis hypogaea HOM05D001826 ORTHO05D004184 2.1e-35 153.3 221 50.2
Potri.014G080800 Populus trichocarpa HOM05D001826 ORTHO05D004184 2.7e-35 152.9 159 60.4
Ca_07891_v3 Cicer arietinum L. HOM05D001826 ORTHO05D004184 3.5e-35 152.5 222 46.8
Nitab4.5_0001620g0100 Nicotiana tabacum HOM05D001826 ORTHO05D004184 3.5e-35 152.5 217 48.8
Nitab4.5_0003111g0100 Nicotiana tabacum HOM05D001826 ORTHO05D004184 4.6e-35 152.1 217 47.5
Gohir.A12G105000 Gossypium hirsutum HOM05D001826 ORTHO05D004184 6.0e-35 151.8 209 49.8
PGR042G0308 Punica granatum HOM05D001826 ORTHO05D004184 6.0e-35 151.8 155 62.6
TPR.G4440 Trifolium pratense HOM05D001826 ORTHO05D004184 6.0e-35 151.8 205 50.7
arahy.Tifrunner.gnm1.ann1.8F4Z70 Arachis hypogaea HOM05D001826 ORTHO05D004184 7.8e-35 151.4 221 49.8
Glyma.03G014000 Glycine max HOM05D001826 ORTHO05D004184 7.8e-35 151.4 224 48.2
Oeu014675.3 Olea europaea HOM05D001826 ORTHO05D004184 1.3e-34 150.6 221 47.1
Glyma.07G073700 Glycine max HOM05D001826 ORTHO05D004184 1.7e-34 150.2 224 48.7
Eucgr.E00180 Eucalyptus grandis HOM05D001826 ORTHO05D004184 3.0e-34 149.4 210 45.7
Nn6g33530 Nelumbo nucifera HOM05D001826 ORTHO05D004184 3.9e-34 149.1 222 46.4
Oeu004525.1 Olea europaea HOM05D001826 ORTHO05D004184 3.9e-34 149.1 220 48.6
Ca_23666_v3 Cicer arietinum L. HOM05D001826 ORTHO05D004184 8.7e-34 147.9 204 51.5
Atru.chr5.450 Acer truncatum HOM05D001826 ORTHO05D004184 1.1e-33 147.5 214 46.7
Manes.05G037400 Manihot esculenta HOM05D001826 ORTHO05D004184 1.1e-33 147.5 171 53.8
CAN.G78.31 Capsicum annuum HOM05D001826 ORTHO05D004184 3.3e-33 146.0 218 47.2
Psat3g110880 Pisum sativum HOM05D001826 ORTHO05D004184 3.3e-33 146.0 154 58.4
Glyma.18G230100 Glycine max HOM05D001826 ORTHO05D004184 7.3e-33 144.8 153 58.2
Peaxi162Scf00397g00111 Petunia axillaris HOM05D001826 ORTHO05D004184 7.3e-33 144.8 222 47.7
MSTRG.4866 Avicennia marina HOM05D001826 ORTHO05D004184 1.3e-32 144.1 157 56.7
Lj1g0018622 Lotus japonicus HOM05D001826 ORTHO05D004184 1.3e-32 144.1 219 47.0
RhsimUnG0002100 Rhododendron simsii HOM05D001826 ORTHO05D004184 1.3e-32 144.1 183 51.9
THA.LOC104801451 Tarenaya hassleriana HOM05D001826 ORTHO05D004184 1.3e-32 144.1 183 50.8
TAR375G0082 Trochodendron aralioides HOM05D001826 ORTHO05D004184 1.3e-32 144.1 237 43.9
vmacro20955 Vaccinium macrocarpon HOM05D001826 ORTHO05D004184 1.3e-32 144.1 157 58.6
arahy.Tifrunner.gnm1.ann1.253UZ6 Arachis hypogaea HOM05D001826 ORTHO05D004184 2.1e-32 143.3 235 46.8
Phvul.010G095600 Phaseolus vulgaris HOM05D001826 ORTHO05D004184 2.1e-32 143.3 219 48.4
Solyc01g094290.3 Solanum lycopersicum HOM05D001826 ORTHO05D004184 2.1e-32 143.3 216 46.8
Sopen01g038090 Solanum pennellii HOM05D001826 ORTHO05D004184 2.1e-32 143.3 216 46.8
arahy.Tifrunner.gnm1.ann1.42EX8Y Arachis hypogaea HOM05D001826 ORTHO05D004184 3.6e-32 142.5 234 47.4
DCAR_006915 Daucus carota HOM05D001826 ORTHO05D004184 3.6e-32 142.5 157 59.2
Actinidia20930 Actinidia chinensis HOM05D001826 ORTHO05D004184 8.1e-32 141.4 231 45.5
TWI23G0863 Tripterygium wilfordii HOM05D001826 ORTHO05D004184 1.1e-31 141.0 223 47.1
Sabra02G0124800 Salix brachista HOM05D001826 ORTHO05D004184 1.4e-31 140.6 222 45.5
Lalb_Chr10g0097211 Lupinus albus HOM05D001826 ORTHO05D004184 1.8e-31 140.2 208 50.0
Lj7A516T61 Lonicera japonica HOM05D001826 ORTHO05D004184 4.0e-31 139.0 158 55.7
Psat4g153760 Pisum sativum HOM05D001826 ORTHO05D004184 6.9e-31 138.3 185 52.4
VMungo0331G1572 Vigna mungo HOM05D001826 ORTHO05D004184 9.0e-31 137.9 209 47.8
AT4G00630 Arabidopsis thaliana HOM05D001826 ORTHO05D004184 1.5e-30 137.1 159 54.7
Lalb_Chr19g0127041 Lupinus albus HOM05D001826 ORTHO05D004184 1.5e-30 137.1 177 50.3
Phvul.010G095800 Phaseolus vulgaris HOM05D001826 ORTHO05D004184 2.6e-30 136.3 215 47.0
Dinv32450 Davidia involucrata HOM05D001826 ORTHO05D018157 5.8e-30 135.2 210 47.6
Gohir.A08G130000 Gossypium hirsutum HOM05D001826 ORTHO05D004184 7.6e-30 134.8 210 46.2
Lsat_1_v5_gn_7_5161 Lactuca sativa HOM05D001826 ORTHO05D004184 7.6e-30 134.8 155 54.8
AL6G52810 Arabidopsis lyrata HOM05D001826 ORTHO05D004184 9.9e-30 134.4 158 54.4
Carub.0006s3656 Capsella rubella HOM05D001826 ORTHO05D004184 2.2e-29 133.3 164 51.8
Duzib133G0016 Durio zibethinus HOM05D001826 ORTHO05D004184 2.2e-29 133.3 202 47.0
ECA240G3725 Erigeron canadensis HOM05D001826 ORTHO05D004184 2.2e-29 133.3 220 40.9
ECA236G3271 Erigeron canadensis HOM05D001826 ORTHO05D004184 4.9e-29 132.1 160 51.2
Gohir.D08G151300 Gossypium hirsutum HOM05D001826 ORTHO05D004184 1.4e-28 130.6 210 45.7
Hma1.2p1_0001F.1_g001660 Hydrangea macrophylla HOM05D001826 ORTHO05D004184 2.4e-28 129.8 156 49.4
CDE06G2718 Ceratophyllum demersum HOM05D001826 ORTHO05D018157 4.2e-28 129.0 181 45.3
Gorai.004G157200 Gossypium raimondii HOM05D001826 ORTHO05D004184 4.2e-28 129.0 210 45.2
Lsat_1_v5_gn_3_136621 Lactuca sativa HOM05D001826 ORTHO05D004184 5.4e-28 128.6 164 47.0
EL10Ac1g00529 Beta vulgaris HOM05D001826 ORTHO05D004184 7.1e-28 128.3 228 42.1
CARHR248780 Cardamine hirsuta HOM05D001826 ORTHO05D004184 7.1e-28 128.3 211 45.0
TWI59G0720 Tripterygium wilfordii HOM05D001826 ORTHO05D004184 7.1e-28 128.3 162 51.9
TWI59G1454 Tripterygium wilfordii HOM05D001826 ORTHO05D004184 7.1e-28 128.3 162 51.9
Rhsim07G0018000 Rhododendron simsii HOM05D001826 ORTHO05D004184 9.3e-28 127.9 229 42.8
HanXRQChr06g0169881 Helianthus annuus HOM05D001826 ORTHO05D004184 1.6e-27 127.1 209 42.1
Migut.B01724 Erythranthe guttata HOM05D001826 ORTHO05D004184 2.1e-27 126.7 155 48.4
HanXRQChr04g0121631 Helianthus annuus HOM05D001826 ORTHO05D004184 2.7e-27 126.3 206 44.7
Sc18g0003430 Simmondsia chinensis HOM05D001826 ORTHO05D004184 3.5e-27 125.9 158 52.5
Ah.05g176450 Amaranthus hybridus HOM05D001826 ORTHO05D004184 4.6e-27 125.6 230 40.4
Aa31LG5G380 Aethionema arabicum HOM05D001826 ORTHO05D004184 7.9e-27 124.8 204 43.6
CSS0034842 Camellia sinensis var. sinensis HOM05D001826 ORTHO05D004184 7.9e-27 124.8 189 46.6
SalBow3G1103 Salvia bowleyana HOM05D001826 ORTHO05D004184 7.9e-27 124.8 156 46.2
Sp1g00500 Schrenkiella parvula HOM05D001826 ORTHO05D004184 1.8e-26 123.6 157 52.9
Hund27301 Selenicereus undatus HOM05D001826 ORTHO05D004184 1.8e-26 123.6 157 51.0
Gorai.001G170200 Gossypium raimondii HOM05D001826 ORTHO05D004184 2.3e-26 123.2 184 47.8
AUR62033325 Chenopodium quinoa HOM05D001826 ORTHO05D004184 5.1e-26 122.1 232 39.7
MBI17_g08175_MAGBIO Magnolia biondii HOM05D005566 ORTHO05D004184 5.1e-26 122.1 159 49.7
CDE04G2063 Ceratophyllum demersum HOM05D001826 ORTHO05D004184 8.7e-26 121.3 192 43.2
SGA_v2.0_scaffold277G46674 Striga asiatica HOM05D001826 ORTHO05D004184 8.7e-26 121.3 154 50.0
SalBow5G0163 Salvia bowleyana HOM05D001826 ORTHO05D004184 1.1e-25 120.9 150 52.7
HanXRQChr03g0093471 Helianthus annuus HOM05D001826 ORTHO05D004184 1.5e-25 120.6 161 47.2
Aa31LG1G11160 Aethionema arabicum HOM05D001826 ORTHO05D004184 1.9e-25 120.2 165 49.7
AUR62033334 Chenopodium quinoa HOM05D001826 ORTHO05D004184 1.9e-25 120.2 232 39.2
SalBow5G2532 Salvia bowleyana HOM05D001826 ORTHO05D004184 5.6e-25 118.6 150 52.7
Hund16940 Selenicereus undatus HOM05D001826 ORTHO05D004184 7.4e-25 118.2 166 48.2
AL1G10550 Arabidopsis lyrata HOM05D001826 ORTHO05D004184 1.6e-24 117.1 146 55.5
Cc02_g37680 Coffea canephora HOM05D001826 ORTHO05D004184 1.6e-24 117.1 157 49.0
DCAR_015945 Daucus carota HOM05D001826 ORTHO05D004184 2.1e-24 116.7 190 42.6
Lj9C580G11 Lonicera japonica HOM05D001826 ORTHO05D004184 3.7e-24 115.9 160 49.4
vmacro13307 Vaccinium macrocarpon HOM05D001826 ORTHO05D004184 3.7e-24 115.9 200 42.0
AUR62004319 Chenopodium quinoa HOM05D001826 ORTHO05D004184 6.2e-24 115.2 227 38.8
Actinidia12714 Actinidia chinensis HOM05D001826 ORTHO05D004184 1.8e-23 113.6 98 68.4
DCAR_008601 Daucus carota HOM05D001826 ORTHO05D004184 1.8e-23 113.6 216 41.7
BcaB03g13614 Brassica carinata HOM05D001826 ORTHO05D018157 5.3e-23 112.1 117 57.3
PSO063G0747 Papaver somniferum HOM05D001826 ORTHO05D004184 5.3e-23 112.1 156 45.5
C08p53870 Brassica napus HOM05D001826 ORTHO05D004184 6.9e-23 111.7 156 48.7
PSO782G0182 Papaver somniferum HOM05D001826 ORTHO05D004184 1.5e-22 110.5 156 45.5
BolC8t52901H Brassica oleracea HOM05D001826 ORTHO05D004184 2.6e-22 109.8 156 48.1
CARHR000530 Cardamine hirsuta HOM05D001826 ORTHO05D004184 2.6e-22 109.8 140 52.9
DCAR_025143 Daucus carota HOM05D001826 ORTHO05D004184 5.8e-22 108.6 155 49.0
HanXRQChr13g0426341 Helianthus annuus HOM05D001826 ORTHO05D004184 1.0e-21 107.8 210 40.5
BraA09t42264Z Brassica rapa HOM05D001826 ORTHO05D004184 1.7e-21 107.1 156 46.2
C05p00270 Brassica napus HOM05D001826 ORTHO05D004184 2.2e-21 106.7 117 53.8
BolC5t28817H Brassica oleracea HOM05D001826 ORTHO05D004184 2.2e-21 106.7 117 53.8
Thhalv10006607m.g Eutrema salsugineum HOM05D001826 ORTHO05D004184 2.9e-21 106.3 129 54.3
A10p00260 Brassica napus HOM05D001826 ORTHO05D004184 3.8e-21 105.9 116 54.3
Phvul.008G067800 Phaseolus vulgaris HOM05D001826 ORTHO05D004184 4.9e-21 105.5 140 51.4
Aqoxy5G04023 Aquilegia oxysepala HOM05D001826 ORTHO05D004184 6.5e-21 105.1 204 41.2
AT1G01790 Arabidopsis thaliana HOM05D001826 ORTHO05D004184 6.5e-21 105.1 160 47.5
BcaB03g13615 Brassica carinata HOM05D001826 ORTHO05D004184 6.5e-21 105.1 116 53.4
MSTRG.20812 Avicennia marina HOM05D001826 ORTHO05D004184 5.5e-20 102.1 156 45.5
Thhalv10006595m.g Eutrema salsugineum HOM05D001826 ORTHO05D004184 9.3e-20 101.3 196 41.3
Sp1g00490 Schrenkiella parvula HOM05D001826 ORTHO05D004184 9.3e-20 101.3 139 50.4
C05p00260 Brassica napus HOM05D001826 ORTHO05D004184 2.1e-19 100.1 101 58.4
BolC5t28815H Brassica oleracea HOM05D001826 ORTHO05D004184 2.1e-19 100.1 101 58.4
BraA10t42302Z Brassica rapa HOM05D001826 ORTHO05D004184 6.0e-19 98.6 116 51.7
A10p00230 Brassica napus HOM05D001826 ORTHO05D004184 1.8e-18 97.1 98 58.2
Zm00001eb065780 Zea mays HOM05D001826 ORTHO05D004184 1.8e-18 97.1 151 44.4
Atru.chr10.2376 Acer truncatum HOM05D001826 ORTHO05D018157 2.3e-18 96.7 122 57.4
unitig_8.g3808 Utricularia gibba HOM05D001826 ORTHO05D004184 2.3e-18 96.7 148 42.6
vmacro13312 Vaccinium macrocarpon HOM05D001826 ORTHO05D004184 2.3e-18 96.7 103 57.3
Zm00001eb433980 Zea mays HOM05D001826 ORTHO05D004184 5.1e-18 95.5 153 46.4
BcaB03g13616 Brassica carinata HOM05D001826 ORTHO05D004184 8.7e-18 94.7 117 52.1
Carub.0001s0042 Capsella rubella HOM05D001826 ORTHO05D004184 8.7e-18 94.7 81 70.4
ATR0680G345 Amborella trichopoda HOM05D001826 ORTHO05D004184 1.1e-17 94.4 104 50.0
CDE04G1203 Ceratophyllum demersum HOM05D001826 ORTHO05D018157 1.2e-14 84.3 108 53.7
Carub.0006s3629 Capsella rubella HOM05D001826 ORTHO05D114377 8.2e-08 61.6 97 41.2
Nn1g01434 Nelumbo nucifera HOM05D001826 ORTHO05D018157 6.9e-07 58.5 211 31.3


User provided reference genes

Program Settings