Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G2492 Fragaria x ananassa HOM05D004502 ORTHO05D005579 0.0e+00 1624.4 802 100.0
FAN10G2351 Fragaria x ananassa HOM05D004502 ORTHO05D005579 0.0e+00 1611.3 825 97.2
FAN06G0667 Fragaria x ananassa HOM05D004502 ORTHO05D005579 0.0e+00 1542.3 818 94.0
FvH4_7g14850 Fragaria vesca HOM05D004502 ORTHO05D005579 0.0e+00 1534.6 841 91.7
FAN01G2073 Fragaria x ananassa HOM05D004502 ORTHO05D005579 0.0e+00 1534.2 825 92.4
FAN06G1095 Fragaria x ananassa HOM05D004502 ORTHO05D005579 0.0e+00 1520.8 868 88.6
RcHm_v2.0_Chr1g0356801 Rosa chinensis HOM05D004502 ORTHO05D005579 0.0e+00 1398.6 845 83.0
MD07G1133800 Malus domestica HOM05D004502 ORTHO05D005579 0.0e+00 1135.9 843 68.6
CiPaw.01G063800 Carya illinoinensis HOM05D004502 ORTHO05D005579 2.1e-290 1002.3 843 60.3
Haze_15535 Corylus avellana HOM05D004502 ORTHO05D005579 2.8e-290 1001.9 829 61.8
QL04p054124 Quercus lobata HOM05D004502 ORTHO05D005579 8.4e-287 990.3 835 60.4
Prupe.2G173600 Prunus persica HOM05D004502 ORTHO05D005579 1.8e-284 982.6 721 69.2
CANSAT56G0477 Cannabis sativa HOM05D004502 ORTHO05D005579 1.1e-281 973.4 788 60.5
Cfa003897 Carpinus fangiana HOM05D004502 ORTHO05D005579 7.6e-280 967.2 821 60.5
Ciclev10018851m.g Citrus clementina HOM05D004502 ORTHO05D005579 2.6e-272 942.2 843 55.9
Cpa.g.sc11.33 Carica papaya HOM05D004502 ORTHO05D005579 5.0e-271 937.9 845 56.4
GSVIVG01027000001 Vitis vinifera HOM05D004502 ORTHO05D005579 6.5e-271 937.6 825 58.3
Atru.chr5.526 Acer truncatum HOM05D004502 ORTHO05D005579 5.5e-270 934.5 833 56.3
FAN03G0719 Fragaria x ananassa HOM05D004502 ORTHO05D005579 3.3e-267 925.2 725 69.7
Potri.014G087300 Populus trichocarpa HOM05D004502 ORTHO05D005579 1.3e-266 923.3 846 56.7
TWI23G1305 Tripterygium wilfordii HOM05D004502 ORTHO05D005579 6.9e-265 917.5 843 56.2
Gohir.D11G095000 Gossypium hirsutum HOM05D004502 ORTHO05D005579 1.4e-262 909.8 839 55.4
Gorai.004G159100 Gossypium raimondii HOM05D004502 ORTHO05D005579 1.2e-261 906.7 844 56.2
Gorai.007G101400 Gossypium raimondii HOM05D004502 ORTHO05D005579 4.7e-261 904.8 839 55.2
Hma1.2p1_0071F.1_g037745 Hydrangea macrophylla HOM05D004502 ORTHO05D005579 4.7e-261 904.8 842 56.7
Glyma.07G068700 Glycine max HOM05D004502 ORTHO05D005579 1.0e-260 903.7 847 55.5
Dinv32500 Davidia involucrata HOM05D004502 ORTHO05D005579 1.1e-259 900.2 881 54.7
PGR042G2088 Punica granatum HOM05D004502 ORTHO05D005579 2.0e-259 899.4 819 56.9
CsaV3_6G000710 Cucumis sativus L. HOM05D004502 ORTHO05D005579 4.4e-259 898.3 845 56.3
Duzib133G0971 Durio zibethinus HOM05D004502 ORTHO05D005579 9.7e-259 897.1 840 56.5
Lj3g0021790 Lotus japonicus HOM05D004502 ORTHO05D005579 5.3e-257 891.3 839 55.2
Glyma.18G235400 Glycine max HOM05D004502 ORTHO05D005579 1.0e-255 887.1 833 54.9
Glyma.09G257000 Glycine max HOM05D004502 ORTHO05D005579 1.3e-255 886.7 832 54.8
Sed0014632 Sechium edule HOM05D004502 ORTHO05D005579 1.7e-255 886.3 805 56.1
Actinidia14191 Actinidia chinensis HOM05D004502 ORTHO05D005579 2.5e-254 882.5 854 54.3
Eucgr.E00113 Eucalyptus grandis HOM05D004502 ORTHO05D005579 7.2e-254 880.9 833 54.6
Thecc.01G356300 Theobroma cacao HOM05D004502 ORTHO05D005579 1.6e-253 879.8 785 57.7
Actinidia20888 Actinidia chinensis HOM05D004502 ORTHO05D005579 4.7e-253 878.2 848 54.8
Medtr8g028875 Medicago truncatula HOM05D004502 ORTHO05D005579 1.8e-252 876.3 801 54.9
Sed0001889 Sechium edule HOM05D004502 ORTHO05D005579 3.9e-252 875.2 844 54.4
TAR629G1389 Trochodendron aralioides HOM05D004502 ORTHO05D005579 5.7e-251 871.3 856 53.7
Lj9C585G14 Lonicera japonica HOM05D004502 ORTHO05D005579 6.3e-250 867.8 822 54.5
TPR.G17909 Trifolium pratense HOM05D004502 ORTHO05D005579 8.2e-250 867.5 813 54.2
Phvul.010G100800 Phaseolus vulgaris HOM05D004502 ORTHO05D005579 1.8e-249 866.3 841 53.5
VMungo0331G1775 Vigna mungo HOM05D004502 ORTHO05D005579 2.4e-249 865.9 826 52.8
Gohir.A11G090500 Gossypium hirsutum HOM05D004502 ORTHO05D005579 5.3e-249 864.8 786 56.1
Duzib138G1080 Durio zibethinus HOM05D004502 ORTHO05D005579 1.2e-248 863.6 787 57.7
Nn1g01586 Nelumbo nucifera HOM05D004502 ORTHO05D005579 2.6e-248 862.4 842 53.7
Lalb_Chr17g0339421 Lupinus albus HOM05D004502 ORTHO05D005579 3.5e-248 862.1 842 53.4
Manes.01G254800 Manihot esculenta HOM05D004502 ORTHO05D005579 4.5e-248 861.7 746 59.1
TPR.G37813 Trifolium pratense HOM05D004502 ORTHO05D005579 5.9e-248 861.3 801 53.7
arahy.Tifrunner.gnm1.ann1.V8X9PU Arachis hypogaea HOM05D004502 ORTHO05D005579 6.5e-247 857.8 849 51.9
VMungo1383G3442 Vigna mungo HOM05D004502 ORTHO05D005579 6.5e-247 857.8 832 53.8
arahy.Tifrunner.gnm1.ann1.0GN1Z3 Arachis hypogaea HOM05D004502 ORTHO05D005579 1.1e-246 857.1 846 51.9
ClCG06G003550 Citrullus lanatus HOM05D004502 ORTHO05D005579 1.9e-246 856.3 838 54.4
Psat3g107400 Pisum sativum HOM05D004502 ORTHO05D005579 1.0e-244 850.5 834 53.1
arahy.Tifrunner.gnm1.ann1.04AGHE Arachis hypogaea HOM05D004502 ORTHO05D005579 3.0e-244 849.0 813 55.1
Hund16660 Selenicereus undatus HOM05D004502 ORTHO05D005579 4.8e-242 841.6 836 51.8
HanXRQChr17g0562371 Helianthus annuus HOM05D004502 ORTHO05D005579 4.1e-241 838.6 831 52.7
Sabra14G0063300 Salix brachista HOM05D004502 ORTHO05D005579 9.1e-241 837.4 820 53.4
CSS0020518 Camellia sinensis var. sinensis HOM05D004502 ORTHO05D005579 2.0e-240 836.3 779 55.8
arahy.Tifrunner.gnm1.ann1.C1BLFK Arachis hypogaea HOM05D004502 ORTHO05D005579 1.7e-239 833.2 806 54.0
Rhsim07G0013000 Rhododendron simsii HOM05D004502 ORTHO05D005579 6.5e-239 831.2 851 52.6
ECA234G4483 Erigeron canadensis HOM05D004502 ORTHO05D005579 2.5e-238 829.3 797 53.3
Sc01g0003530 Simmondsia chinensis HOM05D004502 ORTHO05D005579 1.8e-233 813.1 767 52.8
Aa31LG1G27460 Aethionema arabicum HOM05D004502 ORTHO05D005579 3.1e-233 812.4 834 52.0
Migut.B01778 Erythranthe guttata HOM05D004502 ORTHO05D005579 5.4e-233 811.6 817 51.5
Lsat_1_v5_gn_4_34660 Lactuca sativa HOM05D004502 ORTHO05D005579 2.0e-232 809.7 819 52.0
Cc02_g38300 Coffea canephora HOM05D004502 ORTHO05D005579 2.7e-232 809.3 781 52.9
THA.LOC104802040 Tarenaya hassleriana HOM05D004502 ORTHO05D005579 5.5e-230 801.6 831 52.3
Thhalv10001314m.g Eutrema salsugineum HOM05D004502 ORTHO05D005579 2.1e-229 799.7 827 52.1
Peaxi162Scf00020g01028 Petunia axillaris HOM05D004502 ORTHO05D005579 4.0e-228 795.4 815 51.7
Nn6g33342 Nelumbo nucifera HOM05D004502 ORTHO05D005579 1.5e-227 793.5 782 53.5
Oeu052960.2 Olea europaea HOM05D004502 ORTHO05D005579 7.5e-227 791.2 845 50.7
Phvul.008G060500 Phaseolus vulgaris HOM05D004502 ORTHO05D005579 3.7e-226 788.9 754 53.7
MD01G1067200 Malus domestica HOM05D004502 ORTHO05D005579 4.9e-226 788.5 614 65.8
AL4G45280 Arabidopsis lyrata HOM05D004502 ORTHO05D005579 6.3e-226 788.1 811 52.0
CARHR141310 Cardamine hirsuta HOM05D004502 ORTHO05D005579 7.0e-225 784.6 829 50.8
HanXRQChr06g0170231 Helianthus annuus HOM05D004502 ORTHO05D005579 7.0e-225 784.6 822 49.4
COL.COLO4_12736 Corchorus olitorius HOM05D004502 ORTHO05D005579 1.2e-224 783.9 693 57.4
Sp4g28120 Schrenkiella parvula HOM05D004502 ORTHO05D005579 4.5e-224 781.9 831 51.0
vmacro13259 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 5.9e-224 781.6 784 51.0
MSTRG.17285 Avicennia marina HOM05D004502 ORTHO05D005579 6.6e-223 778.1 828 49.8
AUR62004387 Chenopodium quinoa HOM05D004502 ORTHO05D005579 6.6e-223 778.1 781 50.1
SalBow3G3684 Salvia bowleyana HOM05D004502 ORTHO05D005579 8.6e-223 777.7 825 49.7
Carub.0004s2875 Capsella rubella HOM05D004502 ORTHO05D005579 7.3e-222 774.6 823 50.8
PGSC0003DMG400000181 Solanum tuberosum HOM05D004502 ORTHO05D005579 7.3e-222 774.6 816 49.6
AT2G46060 Arabidopsis thaliana HOM05D004502 ORTHO05D005579 1.0e-220 770.8 824 50.4
C04p06950 Brassica napus HOM05D004502 ORTHO05D005579 8.9e-220 767.7 832 49.9
BolC4t22316H Brassica oleracea HOM05D004502 ORTHO05D005579 8.9e-220 767.7 832 49.9
Ca_23605_v3 Cicer arietinum L. HOM05D004502 ORTHO05D005579 1.5e-219 766.9 722 55.5
A05p06020 Brassica napus HOM05D004502 ORTHO05D005579 2.6e-219 766.1 830 49.8
BraA05t19565Z Brassica rapa HOM05D004502 ORTHO05D005579 2.2e-218 763.1 796 50.5
CAN.G78.100 Capsicum annuum HOM05D004502 ORTHO05D005579 2.4e-217 759.6 814 49.8
Aqoxy7G00260 Aquilegia oxysepala HOM05D004502 ORTHO05D005579 3.2e-217 759.2 840 48.3
BraA04t18886Z Brassica rapa HOM05D004502 ORTHO05D005579 5.4e-217 758.4 836 49.9
ECA236G0795 Erigeron canadensis HOM05D004502 ORTHO05D005579 2.0e-216 756.5 779 50.7
Ca_00829_v3 Cicer arietinum L. HOM05D004502 ORTHO05D005579 4.6e-216 755.4 727 53.4
Gohir.D08G153200 Gossypium hirsutum HOM05D004502 ORTHO05D005579 1.3e-215 753.8 694 56.8
Solyc01g094860.4 Solanum lycopersicum HOM05D004502 ORTHO05D005579 8.6e-215 751.1 828 47.7
Sopen01g038640 Solanum pennellii HOM05D004502 ORTHO05D005579 7.3e-214 748.0 822 48.2
A04p34250 Brassica napus HOM05D004502 ORTHO05D005579 6.2e-213 745.0 863 48.6
C04p72070 Brassica napus HOM05D004502 ORTHO05D005579 2.3e-212 743.0 824 48.5
Rhsim01G0146800 Rhododendron simsii HOM05D004502 ORTHO05D005579 3.0e-207 726.1 852 48.2
PSO478G3176 Papaver somniferum HOM05D004502 ORTHO05D005579 3.6e-205 719.2 820 46.0
SGA_v2.0_scaffold95G28821 Striga asiatica HOM05D004502 ORTHO05D005579 4.7e-205 718.8 800 48.8
PSO782G3525 Papaver somniferum HOM05D004502 ORTHO05D005579 2.9e-202 709.5 808 45.9
Nitab4.5_0010258g0020 Nicotiana tabacum HOM05D004502 ORTHO05D005579 3.9e-199 699.1 757 48.9
Psat4g212960 Pisum sativum HOM05D004502 ORTHO05D005579 1.3e-191 674.1 688 51.0
MBI18_g32047_MAGBIO Magnolia biondii HOM05D004502 ORTHO05D005579 6.6e-191 671.8 954 41.1
MELO3C021198.2 Cucumis melo HOM05D004502 ORTHO05D005579 1.8e-188 663.7 533 60.6
Nitab4.5_0000583g0350 Nicotiana tabacum HOM05D004502 ORTHO05D005579 3.2e-185 652.9 826 43.9
vmacro20915 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 1.6e-184 650.6 656 53.2
HPP92_022633 Vanilla planifolia HOM05D004502 ORTHO05D005579 1.6e-184 650.6 866 42.6
ATR0680G297 Amborella trichopoda HOM05D004502 ORTHO05D005579 1.0e-183 647.9 863 43.5
QL12p032431 Quercus lobata HOM05D004502 ORTHO05D005579 2.4e-180 636.7 780 44.6
AUR62022593 Chenopodium quinoa HOM05D004502 ORTHO05D005579 5.3e-180 635.6 672 48.4
EL10Ac1g00390 Beta vulgaris HOM05D004502 ORTHO05D005579 8.4e-178 628.2 874 42.7
Os10g0446200 Oryza sativa ssp. japonica HOM05D004502 ORTHO05D005579 8.4e-178 628.2 841 41.1
TWI60G0172 Tripterygium wilfordii HOM05D004502 ORTHO05D005579 1.6e-160 570.9 826 39.7
Zm00001eb222430 Zea mays HOM05D004502 ORTHO05D005579 8.7e-159 565.1 699 43.1
COL.COLO4_34496 Corchorus olitorius HOM05D004502 ORTHO05D005579 1.3e-154 551.2 777 40.5
SHI13432 Sapria himalayana HOM05D004502 ORTHO05D005579 3.2e-153 546.6 684 44.9
Aqoxy7G00261 Aquilegia oxysepala HOM05D004502 ORTHO05D005579 1.1e-148 531.6 712 42.6
DCAR_008618 Daucus carota HOM05D004502 ORTHO05D005579 7.9e-144 515.4 398 63.6
Gohir.A08G131800 Gossypium hirsutum HOM05D004502 ORTHO05D005579 2.3e-127 460.7 355 63.9
Glyma.16G034551 Glycine max HOM05D004502 ORTHO05D005579 4.0e-127 459.9 350 64.3
Ah.05g180370 Amaranthus hybridus HOM05D004502 ORTHO05D005579 3.6e-120 436.8 529 44.8
AUR62010714 Chenopodium quinoa HOM05D004502 ORTHO05D005579 2.0e-118 431.0 722 37.1
TAR375G0606 Trochodendron aralioides HOM05D004502 ORTHO05D005579 4.4e-118 429.9 450 51.3
Gohir.A08G131900 Gossypium hirsutum HOM05D004502 ORTHO05D005579 8.3e-101 372.5 440 48.2
Haze_08811 Corylus avellana HOM05D004502 ORTHO05D005579 4.1e-100 370.2 589 36.5
unitig_26.g9298 Utricularia gibba HOM05D004502 ORTHO05D005579 2.9e-93 347.4 330 53.0
Mapoly0035s0107 Marchantia polymorpha HOM05D004502 ORTHO05D005579 2.1e-88 331.3 625 33.9
CDE06G0820 Ceratophyllum demersum HOM05D004502 ORTHO05D005579 8.9e-87 325.9 349 45.6
Glyma.16G034476 Glycine max HOM05D004502 ORTHO05D005579 3.0e-82 310.8 382 44.8
Pp3c10_11170 Physcomitrium patens HOM05D004502 ORTHO05D005579 1.6e-75 288.5 887 25.4
Hund14837 Selenicereus undatus HOM05D004502 ORTHO05D005579 1.1e-71 275.8 436 36.7
SEGI_07374 Sequoiadendron giganteum HOM05D004502 ORTHO05D005579 1.7e-69 268.5 415 36.6
Cc08_g14990 Coffea canephora HOM05D004502 ORTHO05D005579 2.2e-69 268.1 294 45.9
unitig_26.g9297 Utricularia gibba HOM05D004502 ORTHO05D005579 1.6e-64 251.9 381 38.8
MD01G1067000 Malus domestica HOM05D004502 ORTHO05D005579 1.1e-57 229.2 187 63.1
COL.COLO4_28934 Corchorus olitorius HOM05D004502 ORTHO05D005579 5.3e-55 220.3 199 56.8
MELO3C021197.2 Cucumis melo HOM05D004502 ORTHO05D005579 3.9e-50 204.1 295 45.8
vmacro20916 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 2.5e-49 201.4 187 57.2
CBR_g17145 Chara braunii HOM05D004502 ORTHO05D005579 2.6e-25 121.7 127 40.2
Hund14845 Selenicereus undatus HOM05D004502 ORTHO05D005579 5.3e-23 114.0 112 50.0
TPR.G24958 Trifolium pratense HOM05D004502 ORTHO05D005579 3.6e-19 101.3 111 44.1
CDE06G0272 Ceratophyllum demersum HOM05D004502 ORTHO05D005579 2.2e-16 92.0 88 53.4
MELO3C031211.2 Cucumis melo HOM05D004502 ORTHO05D005579 4.7e-11 74.3 143 37.8
Hund14838 Selenicereus undatus HOM05D004502 ORTHO05D005579 1.8e-10 72.4 120 34.2
SEGI_31877 Sequoiadendron giganteum HOM05D004502 ORTHO05D005579 5.2e-10 70.9 88 37.5
MELO3C034807.2 Cucumis melo HOM05D004502 ORTHO05D011879 8.8e-10 70.1 79 50.6
arahy.Tifrunner.gnm1.ann1.YV6W0W Arachis hypogaea HOM05D000064 ORTHO05D001480 1.2e-09 69.7 48 64.6
arahy.Tifrunner.gnm1.ann1.I8C0YZ Arachis hypogaea HOM05D000064 ORTHO05D001480 1.5e-09 69.3 48 64.6
Thecc.03G282200 Theobroma cacao HOM05D004502 ORTHO05D005579 2.6e-09 68.6 57 56.1
arahy.Tifrunner.gnm1.ann1.R57FTB Arachis hypogaea HOM05D004502 ORTHO05D002623 8.3e-08 63.5 45 60.0
Hund14846 Selenicereus undatus HOM05D004502 ORTHO05D005579 1.8e-07 62.4 65 46.2


User provided reference genes

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