Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G2394 Fragaria x ananassa HOM05D007333 ORTHO05D008874 2.2e-67 258.8 130 100.0
FAN01G0324 Fragaria x ananassa HOM05D007333 ORTHO05D008874 3.1e-66 255.0 130 98.5
FAN03G1611 Fragaria x ananassa HOM05D007333 ORTHO05D008874 3.1e-66 255.0 130 97.7
FAN06G2923 Fragaria x ananassa HOM05D007333 ORTHO05D008874 4.5e-65 251.1 130 96.2
RcHm_v2.0_Chr1g0334731 Rosa chinensis HOM05D007333 ORTHO05D008874 1.7e-48 196.1 134 76.9
FvH4_7g06450 Fragaria vesca HOM05D007333 ORTHO05D008874 1.3e-43 179.9 90 96.7
Prupe.2G091100 Prunus persica HOM05D007333 ORTHO05D008874 1.2e-30 136.7 137 59.9
CiPaw.14G027900 Carya illinoinensis HOM05D007333 ORTHO05D008874 4.6e-25 118.2 143 49.7
CANSAT56G1926 Cannabis sativa HOM05D007333 ORTHO05D008874 3.3e-23 112.1 138 45.7
Potri.010G233400 Populus trichocarpa HOM05D007333 ORTHO05D008874 1.6e-22 109.8 134 47.8
Thecc.10G097500 Theobroma cacao HOM05D007333 ORTHO05D008874 5.2e-21 104.8 130 43.1
Ciclev10032982m.g Citrus clementina HOM05D007333 ORTHO05D008874 1.5e-20 103.2 146 44.5
Manes.10G054600 Manihot esculenta HOM05D007333 ORTHO05D008874 1.7e-19 99.8 135 42.2
PGR044G2090 Punica granatum HOM05D007333 ORTHO05D008874 4.2e-18 95.1 133 45.9
COL.COLO4_34172 Corchorus olitorius HOM05D007333 ORTHO05D008874 7.1e-18 94.4 113 42.5
Gohir.D05G290801 Gossypium hirsutum HOM05D007333 ORTHO05D008874 3.5e-17 92.0 126 44.4
Gorai.009G305900 Gossypium raimondii HOM05D007333 ORTHO05D008874 4.6e-17 91.7 126 44.4
Duzib114G0443 Durio zibethinus HOM05D007333 ORTHO05D008874 6.0e-17 91.3 124 40.3
Manes.07G092300 Manihot esculenta HOM05D007333 ORTHO05D008874 7.8e-17 90.9 139 37.4
Sabra10G0181000 Salix brachista HOM05D007333 ORTHO05D008874 1.0e-16 90.5 163 38.0
CsaV3_2G032900 Cucumis sativus L. HOM05D007333 ORTHO05D008874 2.3e-16 89.4 120 42.5
Sed0000251 Sechium edule HOM05D007333 ORTHO05D008874 2.3e-16 89.4 106 43.4
Duzib128G0626 Durio zibethinus HOM05D007333 ORTHO05D008874 8.7e-16 87.4 131 38.9
Gohir.A05G289401 Gossypium hirsutum HOM05D007333 ORTHO05D008874 1.1e-15 87.0 126 43.7
arahy.Tifrunner.gnm1.ann1.N9I1MN Arachis hypogaea HOM05D007333 ORTHO05D008874 1.5e-15 86.7 156 38.5
arahy.Tifrunner.gnm1.ann1.YB4FNL Arachis hypogaea HOM05D007333 ORTHO05D008874 1.5e-15 86.7 156 39.1
MELO3C019874.2 Cucumis melo HOM05D007333 ORTHO05D008874 2.5e-15 85.9 121 43.0
TWI38G1382 Tripterygium wilfordii HOM05D007333 ORTHO05D008874 3.3e-15 85.5 144 39.6
TWI63G0473 Tripterygium wilfordii HOM05D007333 ORTHO05D008874 5.6e-15 84.7 143 40.6
Atru.chr12.950 Acer truncatum HOM05D007333 ORTHO05D008874 9.6e-15 84.0 144 40.3
Dinv20855 Davidia involucrata HOM05D007333 ORTHO05D008874 9.6e-15 84.0 144 39.6
Lj5g0012880 Lotus japonicus HOM05D007333 ORTHO05D008874 9.6e-15 84.0 152 38.2
ClCG08G008020 Citrullus lanatus HOM05D007333 ORTHO05D008874 2.1e-14 82.8 139 36.7
Aqoxy2G01500 Aquilegia oxysepala HOM05D007333 ORTHO05D008874 1.4e-13 80.1 135 36.3
Cpa.g.sc128.62 Carica papaya HOM05D007333 ORTHO05D008874 1.4e-13 80.1 143 37.1
Aa31LG10G7320 Aethionema arabicum HOM05D007333 ORTHO05D008874 9.0e-13 77.4 111 44.1
Eucgr.J01027 Eucalyptus grandis HOM05D007333 ORTHO05D008874 9.0e-13 77.4 141 36.9
Ah.06g184540 Amaranthus hybridus HOM05D007333 ORTHO05D008874 2.0e-12 76.3 80 52.5
Lalb_Chr21g0313181 Lupinus albus HOM05D007333 ORTHO05D008874 2.0e-12 76.3 147 39.5
Dinv31280 Davidia involucrata HOM05D007333 ORTHO05D008874 3.4e-12 75.5 147 36.7
Lalb_Chr06g0170141 Lupinus albus HOM05D007333 ORTHO05D008874 9.9e-12 73.9 140 40.0
TAR633G0429 Trochodendron aralioides HOM05D007333 ORTHO05D008874 1.7e-11 73.2 130 35.4
Carub.0005s1859 Capsella rubella HOM05D007333 ORTHO05D008874 2.2e-11 72.8 140 41.4
QL04p040607 Quercus lobata HOM05D007333 ORTHO05D008874 2.2e-11 72.8 104 41.3
DCAR_019045 Daucus carota HOM05D007333 ORTHO05D008874 3.8e-11 72.0 104 38.5
THA.LOC104823559 Tarenaya hassleriana HOM05D007333 ORTHO05D008874 6.4e-11 71.2 133 33.8
GSVIVG01034686001 Vitis vinifera HOM05D007333 ORTHO05D008874 8.4e-11 70.9 120 35.0
AL5G32820 Arabidopsis lyrata HOM05D007333 ORTHO05D008874 1.4e-10 70.1 132 36.4
Migut.F01662 Erythranthe guttata HOM05D007333 ORTHO05D008874 1.4e-10 70.1 123 34.1
Nitab4.5_0003408g0030 Nicotiana tabacum HOM05D007333 ORTHO05D008874 1.4e-10 70.1 142 35.2
Glyma.10G201500 Glycine max HOM05D007333 ORTHO05D008874 1.9e-10 69.7 134 31.3
Thhalv10010807m.g Eutrema salsugineum HOM05D007333 ORTHO05D008874 3.2e-10 68.9 113 40.7
Nitab4.5_0000593g0040 Nicotiana tabacum HOM05D007333 ORTHO05D008874 4.2e-10 68.6 141 34.8
Ca_10485_v3 Cicer arietinum L. HOM05D007333 ORTHO05D008874 5.4e-10 68.2 143 37.8
AT3G52230 Arabidopsis thaliana HOM05D007333 ORTHO05D008874 7.1e-10 67.8 133 38.3
Cc02_g10320 Coffea canephora HOM05D007333 ORTHO05D008874 7.1e-10 67.8 74 41.9
PGSC0003DMG402027350 Solanum tuberosum HOM05D007333 ORTHO05D008874 7.1e-10 67.8 118 35.6
Lsat_1_v5_gn_8_23060 Lactuca sativa HOM05D007333 ORTHO05D008874 1.6e-09 66.6 69 46.4
ECA233G0976 Erigeron canadensis HOM05D007333 ORTHO05D008874 2.1e-09 66.2 108 38.9
Sp5g10030 Schrenkiella parvula HOM05D007333 ORTHO05D008874 2.1e-09 66.2 123 40.7
TPR.G2540 Trifolium pratense HOM05D007333 ORTHO05D008874 2.1e-09 66.2 144 36.8
C08p27470 Brassica napus HOM05D007333 ORTHO05D008874 2.7e-09 65.9 131 34.4
MBI17_g20230_MAGBIO Magnolia biondii HOM05D007333 ORTHO05D008874 2.7e-09 65.9 71 52.1
Sc20g0001370 Simmondsia chinensis HOM05D007333 ORTHO05D008874 2.7e-09 65.9 110 34.5
Actinidia34782 Actinidia chinensis HOM05D007333 ORTHO05D008874 4.6e-09 65.1 121 39.7
Glyma.20G188900 Glycine max HOM05D007333 ORTHO05D008874 4.6e-09 65.1 137 32.8
Actinidia38900 Actinidia chinensis HOM05D007333 ORTHO05D008874 6.0e-09 64.7 123 36.6
BcaC07g39593 Brassica carinata HOM05D007333 ORTHO05D008874 6.0e-09 64.7 131 33.6
BolC8t50364H Brassica oleracea HOM05D007333 ORTHO05D008874 6.0e-09 64.7 130 34.6
HanXRQChr08g0218141 Helianthus annuus HOM05D007333 ORTHO05D008874 6.0e-09 64.7 112 34.8
MSTRG.408 Avicennia marina HOM05D007333 ORTHO05D008874 7.8e-09 64.3 132 30.3
SEGI_06473 Sequoiadendron giganteum HOM05D007333 ORTHO05D008874 7.8e-09 64.3 73 46.6
vmacro10268 Vaccinium macrocarpon HOM05D007333 ORTHO05D008874 7.8e-09 64.3 135 34.8
SalBow6G6510 Salvia bowleyana HOM05D007333 ORTHO05D008874 1.0e-08 63.9 128 35.2
Hma1.2p1_0567F.1_g180010 Hydrangea macrophylla HOM05D007333 ORTHO05D008874 1.3e-08 63.5 74 35.1
Medtr1g492600 Medicago truncatula HOM05D007333 ORTHO05D008874 1.3e-08 63.5 130 33.1
Cfa011213 Carpinus fangiana HOM05D018442 ORTHO05D020347 2.3e-08 62.8 102 37.3
Oeu015044.1 Olea europaea HOM05D007333 ORTHO05D008874 2.3e-08 62.8 143 32.9
BraA09t39992Z Brassica rapa HOM05D007333 ORTHO05D008874 3.0e-08 62.4 116 36.2
HanXRQChr14g0456271 Helianthus annuus HOM05D007333 ORTHO05D008874 3.9e-08 62.0 102 33.3
A09p45290 Brassica napus HOM05D007333 ORTHO05D008874 5.1e-08 61.6 96 38.5
Medtr1g492630 Medicago truncatula HOM05D007333 ORTHO05D008874 5.1e-08 61.6 133 33.1
Peaxi162Scf00398g00057 Petunia axillaris HOM05D007333 ORTHO05D008874 5.1e-08 61.6 133 35.3
Phvul.007G105600 Phaseolus vulgaris HOM05D007333 ORTHO05D008874 5.1e-08 61.6 137 32.1
CARHR162000 Cardamine hirsuta HOM05D007333 ORTHO05D008874 6.6e-08 61.2 117 38.5
Solyc11g007680.2 Solanum lycopersicum HOM05D007333 ORTHO05D008874 6.6e-08 61.2 124 32.3
Sopen11g003540 Solanum pennellii HOM05D007333 ORTHO05D008874 6.6e-08 61.2 124 32.3
SGA_v2.0_scaffold62G21322 Striga asiatica HOM05D007333 ORTHO05D008874 6.6e-08 61.2 131 33.6
unitig_746.g26629 Utricularia gibba HOM05D007333 ORTHO05D008874 8.7e-08 60.8 78 41.0
VMungo0720G1448 Vigna mungo HOM05D007333 ORTHO05D008874 1.1e-07 60.5 135 33.3
Haze_02631 Corylus avellana HOM05D007333 ORTHO05D008874 5.6e-07 58.2 132 34.1
ECA238G3189 Erigeron canadensis HOM05D007333 ORTHO05D008874 7.3e-07 57.8 108 31.5
Oeu030485.1 Olea europaea HOM05D007333 ORTHO05D008874 7.3e-07 57.8 118 32.2
Lsat_1_v5_gn_2_102881 Lactuca sativa HOM05D007333 ORTHO05D008874 9.6e-07 57.4 127 31.5
A04p07130 Brassica napus HOM05D007333 ORTHO05D008874 4.8e-06 55.1 57 54.4


User provided reference genes

Program Settings