Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G2382 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.8e-72 275.8 134 100.0
FAN10G2608 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.3e-72 275.4 133 100.0
FAN01G0904 Fragaria x ananassa HOM05D003837 ORTHO05D004751 8.8e-72 273.5 133 98.5
RcHm_v2.0_Chr1g0356141 Rosa chinensis HOM05D003837 ORTHO05D004751 2.3e-64 248.8 133 88.0
FvH4_7g14620 Fragaria vesca HOM05D003837 ORTHO05D004751 6.7e-64 247.3 133 87.2
FAN06G1674 Fragaria x ananassa HOM05D003837 ORTHO05D004751 6.7e-64 247.3 133 87.2
FAN06G4414 Fragaria x ananassa HOM05D003837 ORTHO05D004751 6.7e-64 247.3 133 87.2
FAN03G2321 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.1e-63 246.5 133 87.2
FAN10G2259 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.1e-63 246.5 133 86.5
FAN10G2900 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.5e-63 246.1 133 86.5
FAN01G2145 Fragaria x ananassa HOM05D003837 ORTHO05D004751 3.3e-63 245.0 133 85.7
MD01G1065200 Malus domestica HOM05D003837 ORTHO05D004751 1.1e-61 240.0 133 84.2
Sopen10g006240 Solanum pennellii HOM05D003837 ORTHO05D004751 1.4e-61 239.6 133 82.0
Nitab4.5_0000386g0040 Nicotiana tabacum HOM05D003837 ORTHO05D004751 2.4e-61 238.8 133 82.0
PGSC0003DMG400006508 Solanum tuberosum HOM05D003837 ORTHO05D004751 4.1e-61 238.0 133 81.2
Sabra14G0062400 Salix brachista HOM05D003837 ORTHO05D004751 5.3e-61 237.7 133 85.0
Solyc10g012410.3 Solanum lycopersicum HOM05D003837 ORTHO05D004751 5.3e-61 237.7 133 82.0
Thecc.01G357600 Theobroma cacao HOM05D003837 ORTHO05D004751 7.0e-61 237.3 133 82.7
Actinidia02835 Actinidia chinensis HOM05D003837 ORTHO05D004751 9.1e-61 236.9 133 82.0
Actinidia02836 Actinidia chinensis HOM05D003837 ORTHO05D004751 9.1e-61 236.9 133 82.0
CiPaw.01G063000 Carya illinoinensis HOM05D003837 ORTHO05D004751 9.1e-61 236.9 133 83.5
Sed0000473 Sechium edule HOM05D003837 ORTHO05D004751 9.1e-61 236.9 133 82.7
Atru.chr5.512 Acer truncatum HOM05D003837 ORTHO05D004751 1.6e-60 236.1 133 84.2
Potri.014G086100 Populus trichocarpa HOM05D003837 ORTHO05D004751 1.6e-60 236.1 133 81.2
FvH4_7g14540 Fragaria vesca HOM05D003837 ORTHO05D004751 2.0e-60 235.7 133 82.7
Gorai.004G042000 Gossypium raimondii HOM05D003837 ORTHO05D004751 2.0e-60 235.7 133 82.0
Nitab4.5_0002811g0010 Nicotiana tabacum HOM05D003837 ORTHO05D004751 2.0e-60 235.7 133 80.5
Psat3g107800 Pisum sativum HOM05D003837 ORTHO05D004751 2.6e-60 235.3 133 81.2
CAN.G116.14 Capsicum annuum HOM05D003837 ORTHO05D004751 3.5e-60 235.0 133 79.7
QL04p053649 Quercus lobata HOM05D003837 ORTHO05D004751 3.5e-60 235.0 133 82.7
Dinv43830 Davidia involucrata HOM05D003837 ORTHO05D004751 5.9e-60 234.2 133 82.0
Manes.01G255600 Manihot esculenta HOM05D003837 ORTHO05D004751 5.9e-60 234.2 131 83.2
Duzib138G0194 Durio zibethinus HOM05D003837 ORTHO05D004751 1.0e-59 233.4 133 81.2
Gohir.D08G043400 Gossypium hirsutum HOM05D003837 ORTHO05D004751 1.0e-59 233.4 133 80.5
GSVIVG01026949001 Vitis vinifera HOM05D003837 ORTHO05D004751 1.3e-59 233.0 133 82.0
Eucgr.E01551 Eucalyptus grandis HOM05D003837 ORTHO05D004751 1.7e-59 232.6 133 80.5
Atru.chr5.511 Acer truncatum HOM05D003837 ORTHO05D004751 2.9e-59 231.9 133 82.0
MELO3C021202.2 Cucumis melo HOM05D003837 ORTHO05D004751 2.9e-59 231.9 134 82.1
Cc02_g38180 Coffea canephora HOM05D003837 ORTHO05D004751 3.8e-59 231.5 133 79.7
Hma1.2p1_0780F.1_g216730 Hydrangea macrophylla HOM05D003837 ORTHO05D004751 3.8e-59 231.5 133 80.5
Glyma.18G234200 Glycine max HOM05D003837 ORTHO05D004751 6.5e-59 230.7 133 79.7
Gohir.A08G032500 Gossypium hirsutum HOM05D003837 ORTHO05D004751 6.5e-59 230.7 133 80.5
Lj9A584G62 Lonicera japonica HOM05D003837 ORTHO05D004751 6.5e-59 230.7 132 81.1
vmacro21886 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 6.5e-59 230.7 133 79.7
vmacro23130 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 6.5e-59 230.7 133 79.7
Medtr7g077870 Medicago truncatula HOM05D003837 ORTHO05D004751 8.5e-59 230.3 130 80.8
CANSAT56G1308 Cannabis sativa HOM05D003837 ORTHO05D004751 1.5e-58 229.6 133 79.7
AL4G45220 Arabidopsis lyrata HOM05D003837 ORTHO05D004751 2.5e-58 228.8 133 78.9
Migut.B01769 Erythranthe guttata HOM05D003837 ORTHO05D004751 2.5e-58 228.8 133 78.9
AT2G45990 Arabidopsis thaliana HOM05D003837 ORTHO05D004751 3.2e-58 228.4 133 79.7
Sp4g28060 Schrenkiella parvula HOM05D003837 ORTHO05D004751 3.2e-58 228.4 133 78.9
MSTRG.17276 Avicennia marina HOM05D003837 ORTHO05D004751 4.2e-58 228.0 133 77.4
ECA236G1077 Erigeron canadensis HOM05D003837 ORTHO05D004751 5.5e-58 227.6 133 77.4
Phvul.008G061600 Phaseolus vulgaris HOM05D003837 ORTHO05D004751 7.2e-58 227.3 130 80.0
TAR629G3438 Trochodendron aralioides HOM05D003837 ORTHO05D004751 9.4e-58 226.9 133 78.9
CARHR141260 Cardamine hirsuta HOM05D003837 ORTHO05D004751 1.2e-57 226.5 133 78.2
Thhalv10001586m.g Eutrema salsugineum HOM05D003837 ORTHO05D004751 1.2e-57 226.5 133 78.2
arahy.Tifrunner.gnm1.ann1.50MGD9 Arachis hypogaea HOM05D003837 ORTHO05D004751 1.6e-57 226.1 133 76.7
arahy.Tifrunner.gnm1.ann1.AX1MHW Arachis hypogaea HOM05D003837 ORTHO05D004751 1.6e-57 226.1 133 76.7
Oeu010619.1 Olea europaea HOM05D003837 ORTHO05D004751 1.6e-57 226.1 133 78.2
Aa31LG1G27400 Aethionema arabicum HOM05D003837 ORTHO05D004751 2.7e-57 225.3 133 77.4
arahy.Tifrunner.gnm1.ann1.LGM3J9 Arachis hypogaea HOM05D003837 ORTHO05D004751 2.7e-57 225.3 133 76.7
FAN06G3658 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.7e-57 225.3 133 85.0
arahy.Tifrunner.gnm1.ann1.MHF7VE Arachis hypogaea HOM05D003837 ORTHO05D004751 3.6e-57 224.9 133 75.9
Carub.0004s2869 Capsella rubella HOM05D003837 ORTHO05D004751 4.7e-57 224.6 133 76.7
AUR62004375 Chenopodium quinoa HOM05D003837 ORTHO05D004751 4.7e-57 224.6 135 77.0
Ah.05g180500 Amaranthus hybridus HOM05D003837 ORTHO05D004751 6.1e-57 224.2 135 77.8
arahy.Tifrunner.gnm1.ann1.8FQY9T Arachis hypogaea HOM05D003837 ORTHO05D004751 6.1e-57 224.2 133 75.9
Lsat_1_v5_gn_7_4380 Lactuca sativa HOM05D003837 ORTHO05D004751 6.1e-57 224.2 133 76.7
Rhsim01G0163300 Rhododendron simsii HOM05D003837 ORTHO05D004751 6.1e-57 224.2 133 77.4
AUR62022582 Chenopodium quinoa HOM05D003837 ORTHO05D004751 8.0e-57 223.8 135 76.3
Rhsim01G0190400 Rhododendron simsii HOM05D003837 ORTHO05D004751 8.0e-57 223.8 133 77.4
Sc26g0000870 Simmondsia chinensis HOM05D003837 ORTHO05D004751 8.0e-57 223.8 131 78.6
Ciclev10021690m.g Citrus clementina HOM05D003837 ORTHO05D004751 1.8e-56 222.6 133 78.9
PGR042G3540 Punica granatum HOM05D003837 ORTHO05D004751 1.8e-56 222.6 134 77.6
SalBow3G2595 Salvia bowleyana HOM05D003837 ORTHO05D004751 1.8e-56 222.6 134 76.9
CANSAT56G2444 Cannabis sativa HOM05D003837 ORTHO05D004751 2.3e-56 222.2 133 76.7
MBI18_g02839_MAGBIO Magnolia biondii HOM05D003837 ORTHO05D004751 2.3e-56 222.2 133 74.4
CSS0003015 Camellia sinensis var. sinensis HOM05D003837 ORTHO05D004751 4.0e-56 221.5 139 74.1
BcaC02g12159 Brassica carinata HOM05D003837 ORTHO05D004751 5.2e-56 221.1 134 76.9
PSO017G1131 Papaver somniferum HOM05D003837 ORTHO05D004751 5.2e-56 221.1 133 78.2
PSO063G2236 Papaver somniferum HOM05D003837 ORTHO05D004751 8.8e-56 220.3 133 77.4
Migut.B01768 Erythranthe guttata HOM05D003837 ORTHO05D004751 1.2e-55 219.9 135 76.3
Ca_07930_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 2.0e-55 219.2 142 72.5
C04p06910 Brassica napus HOM05D003837 ORTHO05D004751 2.6e-55 218.8 134 76.1
BolC4t22312H Brassica oleracea HOM05D003837 ORTHO05D004751 2.6e-55 218.8 134 76.1
BraA05t19561Z Brassica rapa HOM05D003837 ORTHO05D004751 2.6e-55 218.8 134 76.1
FAN06G0309 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.6e-55 218.8 133 82.7
Lalb_Chr10g0095951 Lupinus albus HOM05D003837 ORTHO05D004751 2.6e-55 218.8 130 78.5
ATR0680G377 Amborella trichopoda HOM05D003837 ORTHO05D004751 3.4e-55 218.4 130 76.9
A05p05980 Brassica napus HOM05D003837 ORTHO05D004751 3.4e-55 218.4 134 76.1
Haze_15524 Corylus avellana HOM05D003837 ORTHO05D004751 5.7e-55 217.6 170 65.9
RcHm_v2.0_Chr1g0356101 Rosa chinensis HOM05D003837 ORTHO05D004751 5.7e-55 217.6 133 81.2
EL10Ac1g00400 Beta vulgaris HOM05D003837 ORTHO05D004751 1.3e-54 216.5 138 75.4
HanXRQChr04g0121181 Helianthus annuus HOM05D003837 ORTHO05D004751 2.2e-54 215.7 133 72.9
unitig_61.g26385 Utricularia gibba HOM05D003837 ORTHO05D004751 2.8e-54 215.3 129 76.0
Ciclev10021689m.g Citrus clementina HOM05D003837 ORTHO05D004751 3.7e-54 214.9 133 75.2
AUR62004376 Chenopodium quinoa HOM05D003837 ORTHO05D004751 4.8e-54 214.5 135 74.1
Lalb_Chr04g0253801 Lupinus albus HOM05D003837 ORTHO05D004751 4.8e-54 214.5 130 75.4
Phvul.008G061500 Phaseolus vulgaris HOM05D003837 ORTHO05D004751 1.1e-53 213.4 130 74.6
arahy.Tifrunner.gnm1.ann1.1HB2SZ Arachis hypogaea HOM05D003837 ORTHO05D004751 1.8e-53 212.6 130 73.8
arahy.Tifrunner.gnm1.ann1.SJDP6S Arachis hypogaea HOM05D003837 ORTHO05D004751 1.8e-53 212.6 130 73.8
Glyma.18G234300 Glycine max HOM05D003837 ORTHO05D004751 1.8e-53 212.6 130 74.6
FAN06G3536 Fragaria x ananassa HOM05D003837 ORTHO05D004751 3.1e-53 211.8 133 73.7
VMungo1383G2611 Vigna mungo HOM05D003837 ORTHO05D004751 4.1e-53 211.5 131 75.6
Glyma.09G258400 Glycine max HOM05D003837 ORTHO05D004751 5.4e-53 211.1 127 75.6
HPP92_025965 Vanilla planifolia HOM05D003837 ORTHO05D004751 5.4e-53 211.1 131 72.5
TPR.G37852 Trifolium pratense HOM05D003837 ORTHO05D004751 1.6e-52 209.5 130 72.3
Medtr7g077880 Medicago truncatula HOM05D003837 ORTHO05D004751 2.0e-52 209.1 130 72.3
CDE05G2325 Ceratophyllum demersum HOM05D003837 ORTHO05D004751 2.7e-52 208.8 136 69.9
Ca_07932_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 4.5e-52 208.0 130 72.3
FAN01G2925 Fragaria x ananassa HOM05D003837 ORTHO05D004751 4.5e-52 208.0 133 72.2
Hund27264 Selenicereus undatus HOM05D003837 ORTHO05D004751 1.0e-51 206.8 131 72.5
FAN06G3952 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.3e-51 206.5 133 72.2
Psat3g107760 Pisum sativum HOM05D003837 ORTHO05D004751 1.3e-51 206.5 130 71.5
Lj1g0003798 Lotus japonicus HOM05D003837 ORTHO05D004751 1.7e-51 206.1 130 72.3
RcHm_v2.0_Chr1g0356011 Rosa chinensis HOM05D003837 ORTHO05D004751 2.2e-51 205.7 133 72.2
Os07g0418000 Oryza sativa ssp. japonica HOM05D003837 ORTHO05D004751 8.5e-51 203.8 130 69.2
Prupe.2G172200 Prunus persica HOM05D003837 ORTHO05D004751 8.5e-51 203.8 133 74.4
SEGI_21942 Sequoiadendron giganteum HOM05D003837 ORTHO05D004751 1.5e-50 203.0 133 69.9
FAN10G0266 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.9e-50 202.6 133 72.2
FAN10G3579 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.9e-50 202.6 133 72.2
DCAR_025196 Daucus carota HOM05D003837 ORTHO05D004751 2.5e-50 202.2 133 73.7
RcHm_v2.0_Chr1g0356041 Rosa chinensis HOM05D003837 ORTHO05D004751 2.5e-50 202.2 133 71.4
Zm00001eb094870 Zea mays HOM05D003837 ORTHO05D004751 2.5e-50 202.2 129 69.0
FvH4_3g44250 Fragaria vesca HOM05D003837 ORTHO05D004751 5.5e-50 201.1 133 69.9
FAN11G2601 Fragaria x ananassa HOM05D003837 ORTHO05D004751 5.5e-50 201.1 133 69.9
FAN16G2327 Fragaria x ananassa HOM05D003837 ORTHO05D004751 5.5e-50 201.1 133 69.9
Ca_07931_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 1.2e-49 199.9 130 68.5
Pp3c23_10590 Physcomitrium patens HOM05D003837 ORTHO05D004751 3.0e-48 195.3 132 69.7
SMO118G0280 Selaginella moellendorffii HOM05D003837 ORTHO05D004751 8.8e-48 193.7 131 70.2
TWI14G0320 Tripterygium wilfordii HOM05D003837 ORTHO05D004751 1.2e-47 193.4 133 71.4
AagrBONN_evm.TU.Sc2ySwM_228.2910 Anthoceros agrestis HOM05D003837 ORTHO05D004751 2.0e-47 192.6 132 68.9
ClCG06G003610 Citrullus lanatus HOM05D003837 ORTHO05D004751 2.0e-47 192.6 133 69.9
Lj1g0022323 Lotus japonicus HOM05D003837 ORTHO05D004751 2.0e-47 192.6 133 69.2
CsaV3_6G000640 Cucumis sativus L. HOM05D003837 ORTHO05D004751 4.4e-47 191.4 133 69.9
THA.LOC104802037 Tarenaya hassleriana HOM05D003837 ORTHO05D004751 5.7e-47 191.0 133 69.9
TPR.G37767 Trifolium pratense HOM05D003837 ORTHO05D004751 5.7e-47 191.0 130 70.0
AagrBONN_evm.TU.Sc2ySwM_228.5133 Anthoceros agrestis HOM05D003837 ORTHO05D004751 7.5e-47 190.7 132 68.9
Pp3c11_2170 Physcomitrium patens HOM05D003837 ORTHO05D004751 7.5e-47 190.7 133 64.7
Mapoly0002s0196 Marchantia polymorpha HOM05D003837 ORTHO05D004751 1.3e-46 189.9 128 70.3
Cpa.g.sc11.20 Carica papaya HOM05D003837 ORTHO05D004751 1.7e-46 189.5 133 67.7
Cfa003906 Carpinus fangiana HOM05D003837 ORTHO05D004751 1.4e-45 186.4 116 76.7
VMungo1383G0868 Vigna mungo HOM05D003837 ORTHO05D004751 2.0e-44 182.6 130 66.9
Pp3c24_7060 Physcomitrium patens HOM05D003837 ORTHO05D004751 5.9e-44 181.0 134 62.7
RcHm_v2.0_Chr1g0355961 Rosa chinensis HOM05D003837 ORTHO05D004751 7.7e-44 180.6 133 63.2
arahy.Tifrunner.gnm1.ann1.438NR4 Arachis hypogaea HOM05D003837 ORTHO05D004751 3.8e-43 178.3 118 71.2
RcHm_v2.0_Chr1g0356051 Rosa chinensis HOM05D003837 ORTHO05D004751 6.6e-43 177.6 133 64.7
arahy.Tifrunner.gnm1.ann1.I86G4G Arachis hypogaea HOM05D003837 ORTHO05D004751 1.9e-42 176.0 108 74.1
COL.COLO4_12726 Corchorus olitorius HOM05D003837 ORTHO05D004751 1.9e-42 176.0 133 67.7
HanXRQChr04g0121171 Helianthus annuus HOM05D003837 ORTHO05D004751 1.9e-42 176.0 118 68.6
Peaxi162Scf00008g02421 Petunia axillaris HOM05D003837 ORTHO05D004751 4.2e-42 174.9 133 66.2
FvH4_7g14571 Fragaria vesca HOM05D003837 ORTHO05D004751 9.5e-42 173.7 88 96.6
CBR_g30756 Chara braunii HOM05D003837 ORTHO05D004751 8.9e-40 167.2 155 55.5
Nn1g01565 Nelumbo nucifera HOM05D003837 ORTHO05D004751 5.9e-36 154.5 133 53.4
MD09G1245400 Malus domestica HOM05D003837 ORTHO05D004751 2.9e-35 152.1 82 87.8
Cre06.g278117 Chlamydomonas reinhardtii HOM05D003837 ORTHO05D004751 1.6e-25 119.8 129 47.3
SMO118G0457 Selaginella moellendorffii HOM05D003837 ORTHO05D004751 4.7e-25 118.2 131 48.9
MCO05G263 Micromonas commoda HOM05D003837 ORTHO05D004751 2.0e-23 112.8 128 46.9
Glyma.09G258500 Glycine max HOM05D003837 ORTHO05D004751 1.3e-22 110.2 71 71.8
SGA_v2.0_scaffold95G28830 Striga asiatica HOM05D003837 ORTHO05D004751 4.9e-22 108.2 108 54.6
Cre13.g578900 Chlamydomonas reinhardtii HOM05D003837 ORTHO05D004751 1.6e-17 93.2 130 40.0
A06p08350 Brassica napus HOM05D003837 ORTHO05D099682 7.1e-13 77.8 65 56.9
Ciclev10013186m.g Citrus clementina HOM05D003837 ORTHO05D004751 3.5e-12 75.5 62 59.7
arahy.Tifrunner.gnm1.ann1.B43A3C Arachis hypogaea HOM05D003837 ORTHO05D004751 5.1e-11 71.6 45 66.7
AUR62043290 Chenopodium quinoa HOM05D008055 ORTHO05D009927 1.9e-10 69.7 58 55.2
BolC9t54120H Brassica oleracea HOM05D003837 ORTHO05D033622 2.5e-10 69.3 57 57.9
BolC7t40474H Brassica oleracea HOM05D003837 ORTHO05D033622 4.3e-10 68.6 57 56.1
C09p56440 Brassica napus HOM05D003837 ORTHO05D101394 6.8e-08 61.2 51 56.9
Ciclev10006592m.g Citrus clementina HOM05D003837 ORTHO05D033091 6.8e-08 61.2 40 60.0
Ciclev10003222m.g Citrus clementina HOM05D003684 ORTHO05D004428 1.3e-06 57.0 40 60.0
RcHm_v2.0_Chr1g0356441 Rosa chinensis HOM05D003837 ORTHO05D004751 6.4e-06 54.7 29 79.3


User provided reference genes

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