Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G2377 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.9e-61 238.4 123 100.0
FAN28G3009 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.5e-49 198.7 103 99.0
FAN10G0042 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.3e-48 196.4 101 100.0
FAN03G1221 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.8e-48 195.3 101 99.0
FAN01G2456 Fragaria x ananassa HOM05D005367 ORTHO05D006328 4.8e-48 194.5 101 99.0
FAN10G0871 Fragaria x ananassa HOM05D005367 ORTHO05D006328 6.2e-48 194.1 101 99.0
FvH4_7g14150 Fragaria vesca HOM05D005367 ORTHO05D006328 1.5e-46 189.5 101 98.0
FAN10G3879 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.6e-46 188.7 101 97.0
FAN06G0563 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.3e-45 186.4 101 96.0
RcHm_v2.0_Chr1g0355051 Rosa chinensis HOM05D005367 ORTHO05D006328 1.3e-37 159.8 114 76.3
RcHm_v2.0_Chr1g0354801 Rosa chinensis HOM05D005367 ORTHO05D006328 8.2e-32 140.6 114 68.4
Prupe.2G167900 Prunus persica HOM05D005367 ORTHO05D006328 4.1e-23 111.7 108 63.0
TWI14G0016 Tripterygium wilfordii HOM05D005367 ORTHO05D006328 1.6e-19 99.8 87 64.4
MD01G1057500 Malus domestica HOM05D005367 ORTHO05D006328 5.1e-18 94.7 130 46.9
Haze_15487 Corylus avellana HOM05D005367 ORTHO05D006328 8.8e-18 94.0 107 52.3
Cfa003939 Carpinus fangiana HOM05D005367 ORTHO05D006328 2.5e-17 92.4 107 52.3
Ciclev10021865m.g Citrus clementina HOM05D005367 ORTHO05D006328 3.3e-17 92.0 112 48.2
Dinv43805 Davidia involucrata HOM05D005367 ORTHO05D006328 3.3e-17 92.0 92 54.3
MD07G1139200 Malus domestica HOM05D005367 ORTHO05D006328 7.4e-17 90.9 124 47.6
Atru.chr5.466 Acer truncatum HOM05D005367 ORTHO05D006328 1.3e-16 90.1 100 50.0
CSS0040093 Camellia sinensis var. sinensis HOM05D005367 ORTHO05D006328 1.3e-16 90.1 91 52.7
Hma1.2p1_0001F.1_g001380 Hydrangea macrophylla HOM05D005367 ORTHO05D006328 1.3e-16 90.1 85 56.5
CSS0033809 Camellia sinensis var. sinensis HOM05D005367 ORTHO05D006328 2.2e-16 89.4 82 53.7
Actinidia20916 Actinidia chinensis HOM05D005367 ORTHO05D006328 6.3e-16 87.8 75 58.7
QL08p049031 Quercus lobata HOM05D005367 ORTHO05D006328 1.4e-15 86.7 72 59.7
Manes.05G036200 Manihot esculenta HOM05D005367 ORTHO05D006328 2.4e-15 85.9 79 55.7
TAR636G2389 Trochodendron aralioides HOM05D003133 ORTHO05D003642 9.1e-15 84.0 105 47.6
GSVIVG01026893001 Vitis vinifera HOM05D005367 ORTHO05D006328 9.1e-15 84.0 106 50.9
Duzib133G0249 Durio zibethinus HOM05D005367 ORTHO05D006328 1.5e-14 83.2 70 58.6
Lsat_1_v5_gn_4_36280 Lactuca sativa HOM05D005367 ORTHO05D006328 2.6e-14 82.4 88 52.3
Cpa.g.sc18.245 Carica papaya HOM05D005367 ORTHO05D006328 4.5e-14 81.6 109 47.7
Gohir.D08G152300 Gossypium hirsutum HOM05D005367 ORTHO05D006328 4.5e-14 81.6 106 49.1
COL.COLO4_12698 Corchorus olitorius HOM05D005367 ORTHO05D006328 1.0e-13 80.5 134 42.5
Migut.B01742 Erythranthe guttata HOM05D005367 ORTHO05D006328 1.0e-13 80.5 68 55.9
Potri.014G082600 Populus trichocarpa HOM05D005367 ORTHO05D006328 1.0e-13 80.5 68 60.3
CiPaw.02G029900 Carya illinoinensis HOM05D005367 ORTHO05D006328 1.3e-13 80.1 109 45.9
Glyma.18G231900 Glycine max HOM05D005367 ORTHO05D006328 1.3e-13 80.1 66 54.5
Sopen05g028210 Solanum pennellii HOM05D005367 ORTHO05D006328 1.3e-13 80.1 97 45.4
HanXRQChr16g0522831 Helianthus annuus HOM05D005367 ORTHO05D006328 2.2e-13 79.3 76 53.9
Phvul.008G065800 Phaseolus vulgaris HOM05D005367 ORTHO05D006328 2.2e-13 79.3 84 45.2
Eucgr.D02282 Eucalyptus grandis HOM05D005367 ORTHO05D006328 2.9e-13 79.0 106 48.1
Solyc05g049880.3 Solanum lycopersicum HOM05D005367 ORTHO05D006328 2.9e-13 79.0 97 45.4
Lalb_Chr01g0011531 Lupinus albus HOM05D005367 ORTHO05D006328 3.8e-13 78.6 67 56.7
Lalb_Chr24g0401631 Lupinus albus HOM05D005367 ORTHO05D006328 3.8e-13 78.6 67 56.7
THA.LOC104801446 Tarenaya hassleriana HOM05D005367 ORTHO05D006328 3.8e-13 78.6 69 55.1
PGSC0003DMG400021656 Solanum tuberosum HOM05D005367 ORTHO05D006328 5.0e-13 78.2 97 45.4
vmacro13291 Vaccinium macrocarpon HOM05D005367 ORTHO05D006328 5.0e-13 78.2 73 50.7
Nn1g01501 Nelumbo nucifera HOM05D005367 ORTHO05D006328 6.5e-13 77.8 96 49.0
Gorai.004G158200 Gossypium raimondii HOM05D005367 ORTHO05D006328 8.5e-13 77.4 103 46.6
VMungo1383G2792 Vigna mungo HOM05D005367 ORTHO05D006328 8.5e-13 77.4 74 51.4
SalBow3G2019 Salvia bowleyana HOM05D005367 ORTHO05D006328 1.1e-12 77.0 95 44.2
TAR375G0799 Trochodendron aralioides HOM05D005367 ORTHO05D006328 1.1e-12 77.0 103 47.6
arahy.Tifrunner.gnm1.ann1.D8DQXR Arachis hypogaea HOM05D005367 ORTHO05D006328 1.4e-12 76.6 79 45.6
PSO782G1827 Papaver somniferum HOM05D005367 ORTHO05D006328 1.4e-12 76.6 103 41.7
Nitab4.5_0001702g0150 Nicotiana tabacum HOM05D005367 ORTHO05D006328 1.9e-12 76.3 68 51.5
PSO478G0766 Papaver somniferum HOM05D005367 ORTHO05D006328 2.5e-12 75.9 100 43.0
Ca_07909_v3 Cicer arietinum L. HOM05D005367 ORTHO05D006328 3.2e-12 75.5 96 44.8
Atru.chr1.441 Acer truncatum HOM05D005367 ORTHO05D006328 5.5e-12 74.7 69 49.3
arahy.Tifrunner.gnm1.ann1.G5US7K Arachis hypogaea HOM05D005367 ORTHO05D006328 5.5e-12 74.7 79 44.3
Lj9A582T87 Lonicera japonica HOM05D005367 ORTHO05D006328 5.5e-12 74.7 98 43.9
Manes.01G258500 Manihot esculenta HOM05D005367 ORTHO05D006328 5.5e-12 74.7 121 40.5
SGA_v2.0_scaffold11G05663 Striga asiatica HOM05D000368 ORTHO05D006328 5.5e-12 74.7 76 47.4
MSTRG.20826 Avicennia marina HOM05D005367 ORTHO05D006328 7.2e-12 74.3 69 49.3
Oeu056369.1 Olea europaea HOM05D005367 ORTHO05D006328 7.2e-12 74.3 107 42.1
Nn6g33454 Nelumbo nucifera HOM05D005367 ORTHO05D006328 9.4e-12 73.9 94 47.9
ClCG06G003800 Citrullus lanatus HOM05D005367 ORTHO05D006328 1.2e-11 73.6 96 47.9
Gohir.A08G130800 Gossypium hirsutum HOM05D005367 ORTHO05D006328 1.2e-11 73.6 103 44.7
unitig_61.g26388 Utricularia gibba HOM05D005367 ORTHO05D006328 1.2e-11 73.6 82 45.1
Carub.0001s0048 Capsella rubella HOM05D005367 ORTHO05D006328 2.1e-11 72.8 77 49.4
PGR031G3282 Punica granatum HOM05D005367 ORTHO05D006328 2.1e-11 72.8 108 40.7
QL09p013904 Quercus lobata HOM05D005367 ORTHO05D006328 2.1e-11 72.8 93 47.3
Gohir.A11G088100 Gossypium hirsutum HOM05D005367 ORTHO05D006328 3.6e-11 72.0 67 52.2
Lj1g0004821 Lotus japonicus HOM05D005367 ORTHO05D006328 4.7e-11 71.6 91 45.1
Nitab4.5_0008050g0010 Nicotiana tabacum HOM05D005367 ORTHO05D006328 4.7e-11 71.6 82 43.9
Sc01g0003360 Simmondsia chinensis HOM05D005367 ORTHO05D006328 4.7e-11 71.6 88 45.5
TWI59G0064 Tripterygium wilfordii HOM05D005367 ORTHO05D006328 4.7e-11 71.6 77 51.9
Cc02_g37850 Coffea canephora HOM05D005367 ORTHO05D006328 6.1e-11 71.2 65 49.2
Eucgr.E00158 Eucalyptus grandis HOM05D005367 ORTHO05D006328 7.9e-11 70.9 70 51.4
Manes.06G148200 Manihot esculenta HOM05D005367 ORTHO05D006328 7.9e-11 70.9 97 46.4
Thhalv10008538m.g Eutrema salsugineum HOM05D005367 ORTHO05D006328 1.0e-10 70.5 88 48.9
Gohir.D11G092400 Gossypium hirsutum HOM05D005367 ORTHO05D006328 1.0e-10 70.5 109 44.0
Gorai.007G098700 Gossypium raimondii HOM05D005367 ORTHO05D006328 1.0e-10 70.5 109 44.0
AL1G10610 Arabidopsis lyrata HOM05D005367 ORTHO05D006328 1.8e-10 69.7 102 45.1
Peaxi162Scf00191g01425 Petunia axillaris HOM05D005367 ORTHO05D006328 1.8e-10 69.7 70 45.7
FAN10G3657 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.3e-10 69.3 99 48.5
FAN10G4254 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.3e-10 69.3 99 48.5
Potri.002G158500 Populus trichocarpa HOM05D005367 ORTHO05D006328 2.3e-10 69.3 111 40.5
PGR042G0868 Punica granatum HOM05D005367 ORTHO05D006328 3.0e-10 68.9 115 38.3
C08p53830 Brassica napus HOM05D006991 ORTHO05D009188 3.9e-10 68.6 100 41.0
BolC8t52897H Brassica oleracea HOM05D000368 ORTHO05D000289 3.9e-10 68.6 100 41.0
Dinv35219 Davidia involucrata HOM05D005367 ORTHO05D006328 3.9e-10 68.6 103 37.9
Sp1g00570 Schrenkiella parvula HOM05D005367 ORTHO05D006328 3.9e-10 68.6 92 42.4
Thecc.01G360700 Theobroma cacao HOM05D005367 ORTHO05D006328 3.9e-10 68.6 117 41.9
Ciclev10006075m.g Citrus clementina HOM05D005367 ORTHO05D006328 5.1e-10 68.2 73 47.9
MELO3C021217.2 Cucumis melo HOM05D005367 ORTHO05D006328 5.1e-10 68.2 91 46.2
ECA234G3275 Erigeron canadensis HOM05D005367 ORTHO05D006328 5.1e-10 68.2 84 41.7
Medtr7g077380 Medicago truncatula HOM05D005367 ORTHO05D006328 5.1e-10 68.2 100 39.0
MBI17_g24635_MAGBIO Magnolia biondii HOM05D005367 ORTHO05D006328 6.7e-10 67.8 63 47.6
AT1G01730 Arabidopsis thaliana HOM05D005367 ORTHO05D006328 8.8e-10 67.4 95 44.2
DCAR_010300 Daucus carota HOM05D005367 ORTHO05D006328 8.8e-10 67.4 73 46.6
CANSAT56G3377 Cannabis sativa HOM05D005367 ORTHO05D006328 1.5e-09 66.6 103 41.7
Aa31LG1G11100 Aethionema arabicum HOM05D005367 ORTHO05D006328 2.6e-09 65.9 74 43.2
VMungo1383G2823 Vigna mungo HOM05D005367 ORTHO05D006328 2.6e-09 65.9 82 39.0
EL10Ac1g00429 Beta vulgaris HOM05D005367 ORTHO05D006328 3.3e-09 65.5 83 43.4
BraA09t42260Z Brassica rapa HOM05D005367 ORTHO05D006328 3.3e-09 65.5 100 39.0
Psat3g109400 Pisum sativum HOM05D005367 ORTHO05D006328 3.3e-09 65.5 100 41.0
Atru.chr1.440 Acer truncatum HOM05D005367 ORTHO05D006328 4.4e-09 65.1 98 45.9
FvH4_7g29600 Fragaria vesca HOM05D005367 ORTHO05D006328 5.7e-09 64.7 109 43.1
MD01G1202200 Malus domestica HOM05D005367 ORTHO05D006328 5.7e-09 64.7 59 50.8
TPR.G37815 Trifolium pratense HOM05D005367 ORTHO05D006328 7.4e-09 64.3 97 40.2
RcHm_v2.0_Chr1g0377581 Rosa chinensis HOM05D005367 ORTHO05D006328 9.7e-09 63.9 93 40.9
vmacro06668 Vaccinium macrocarpon HOM05D005367 ORTHO05D006328 9.7e-09 63.9 118 35.6
Hund16930 Selenicereus undatus HOM05D005367 ORTHO05D006328 1.3e-08 63.5 144 34.7
Actinidia34119 Actinidia chinensis HOM05D005367 ORTHO05D006328 1.7e-08 63.2 91 40.7
Duzib205G1257 Durio zibethinus HOM05D005367 ORTHO05D006328 2.8e-08 62.4 80 38.8
AUR62022543 Chenopodium quinoa HOM05D000713 ORTHO05D000547 3.7e-08 62.0 81 48.1
CsaV3_6G000470 Cucumis sativus L. HOM05D005367 ORTHO05D006328 3.7e-08 62.0 92 42.4
Sed0017642 Sechium edule HOM05D005367 ORTHO05D006328 3.7e-08 62.0 60 53.3
Aqoxy7G00339 Aquilegia oxysepala HOM05D005367 ORTHO05D006328 6.3e-08 61.2 81 40.7
AUR62004342 Chenopodium quinoa HOM05D005367 ORTHO05D006328 3.1e-07 58.9 55 49.1
Ah.05g180710 Amaranthus hybridus HOM05D005367 ORTHO05D006328 2.0e-06 56.2 92 43.5
COL.COLO4_14330 Corchorus olitorius HOM05D005367 ORTHO05D006328 2.0e-06 56.2 85 40.0
Sabra02G0126000 Salix brachista HOM05D005367 ORTHO05D006328 5.9e-06 54.7 116 35.3
HPP92_022052 Vanilla planifolia HOM05D005367 ORTHO05D006328 5.9e-06 54.7 56 46.4
HPP92_027620 Vanilla planifolia HOM05D005367 ORTHO05D006328 5.9e-06 54.7 56 46.4


User provided reference genes

Program Settings