Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G2357 Fragaria x ananassa HOM05D006127 ORTHO05D007465 0.0e+00 1077.0 540 100.0
FAN10G0315 Fragaria x ananassa HOM05D006127 ORTHO05D007465 3.1e-301 1037.7 522 99.4
FAN06G1782 Fragaria x ananassa HOM05D006127 ORTHO05D007465 1.5e-292 1008.8 522 97.1
FAN06G3350 Fragaria x ananassa HOM05D006127 ORTHO05D007465 2.6e-292 1008.1 522 96.9
FAN03G3352 Fragaria x ananassa HOM05D006127 ORTHO05D007465 1.7e-291 1005.4 522 96.9
FAN03G2078 Fragaria x ananassa HOM05D006127 ORTHO05D007465 5.0e-291 1003.8 520 96.9
RcHm_v2.0_Chr1g0378611 Rosa chinensis HOM05D006127 ORTHO05D007465 4.7e-257 891.0 509 88.2
Prupe.2G302400 Prunus persica HOM05D006127 ORTHO05D007465 2.2e-214 749.2 535 74.4
MD07G1280200 Malus domestica HOM05D006127 ORTHO05D007465 1.6e-212 743.0 539 72.9
MD01G1210100 Malus domestica HOM05D006127 ORTHO05D007465 3.9e-203 711.8 433 80.8
FvH4_7g30450 Fragaria vesca HOM05D006127 ORTHO05D007465 3.6e-201 705.3 373 95.7
Cfa016302 Carpinus fangiana HOM05D006127 ORTHO05D007465 2.4e-192 676.0 530 67.5
QL09p012458 Quercus lobata HOM05D006127 ORTHO05D007465 4.5e-191 671.8 540 67.0
Ciclev10004691m.g Citrus clementina HOM05D006127 ORTHO05D007465 3.9e-187 658.7 541 64.7
CiPaw.06G004100 Carya illinoinensis HOM05D006127 ORTHO05D007465 5.3e-184 648.3 526 65.0
Gorai.003G069400 Gossypium raimondii HOM05D006127 ORTHO05D007465 5.8e-183 644.8 543 63.7
Sabra17G0124200 Salix brachista HOM05D006127 ORTHO05D007465 3.8e-182 642.1 529 64.8
Gohir.D11G229300 Gossypium hirsutum HOM05D006127 ORTHO05D007465 2.5e-181 639.4 542 63.1
Potri.017G148900 Populus trichocarpa HOM05D006127 ORTHO05D007465 1.3e-179 633.6 529 64.3
Atru.chr1.338 Acer truncatum HOM05D006127 ORTHO05D007465 5.1e-179 631.7 529 63.5
Dinv35267 Davidia involucrata HOM05D006127 ORTHO05D007465 5.1e-179 631.7 530 63.2
Gohir.A11G225200 Gossypium hirsutum HOM05D006127 ORTHO05D007465 5.1e-179 631.7 543 62.4
Thecc.03G186000 Theobroma cacao HOM05D006127 ORTHO05D007465 1.6e-177 626.7 549 62.8
Potri.004G072100 Populus trichocarpa HOM05D006127 ORTHO05D007465 3.7e-177 625.5 513 65.3
CSS0002355 Camellia sinensis var. sinensis HOM05D006127 ORTHO05D007465 8.2e-177 624.4 536 63.6
COL.COLO4_30292 Corchorus olitorius HOM05D006127 ORTHO05D007465 3.1e-176 622.5 485 67.8
Lj2g0027649 Lotus japonicus HOM05D006127 ORTHO05D007465 1.0e-174 617.5 536 62.1
Manes.06G153500 Manihot esculenta HOM05D006127 ORTHO05D007465 1.3e-174 617.1 554 61.9
CiPaw.05G261300 Carya illinoinensis HOM05D006127 ORTHO05D007465 3.8e-174 615.5 427 72.1
TWI23G0320 Tripterygium wilfordii HOM05D006127 ORTHO05D007465 9.3e-173 610.9 506 63.8
CSS0021566 Camellia sinensis var. sinensis HOM05D006127 ORTHO05D007465 2.1e-172 609.8 540 62.4
Phvul.004G105900 Phaseolus vulgaris HOM05D006127 ORTHO05D007465 3.6e-172 609.0 507 64.9
PGR044G2596 Punica granatum HOM05D006127 ORTHO05D007465 6.1e-172 608.2 519 64.4
Lalb_Chr01g0009501 Lupinus albus HOM05D006127 ORTHO05D007465 1.0e-171 607.4 508 63.6
Eucgr.A02719 Eucalyptus grandis HOM05D006127 ORTHO05D007465 2.3e-171 606.3 484 65.7
Ca_26803_v3 Cicer arietinum L. HOM05D006127 ORTHO05D007465 2.5e-170 602.8 483 65.8
TAR374G0777 Trochodendron aralioides HOM05D006127 ORTHO05D007465 3.3e-170 602.4 472 66.7
Actinidia34165 Actinidia chinensis HOM05D006127 ORTHO05D007465 5.7e-170 601.7 526 62.2
Glyma.09G129300 Glycine max HOM05D006127 ORTHO05D007465 5.7e-170 601.7 506 64.2
CsaV3_5G001020 Cucumis sativus L. HOM05D006127 ORTHO05D007465 1.3e-169 600.5 526 60.3
Haze_00059 Corylus avellana HOM05D006127 ORTHO05D007465 2.2e-169 599.7 530 63.0
Nitab4.5_0000472g0230 Nicotiana tabacum HOM05D006127 ORTHO05D007465 6.3e-169 598.2 454 67.8
PGSC0003DMG400009503 Solanum tuberosum HOM05D006127 ORTHO05D007465 1.1e-168 597.4 458 67.7
THA.LOC104818243 Tarenaya hassleriana HOM05D006127 ORTHO05D007465 2.4e-168 596.3 466 65.0
Aa31LG11G990 Aethionema arabicum HOM05D006127 ORTHO05D007465 1.5e-167 593.6 525 62.1
Solyc03g007620.3 Solanum lycopersicum HOM05D006127 ORTHO05D007465 1.5e-167 593.6 458 67.0
Sabra04G0047500 Salix brachista HOM05D006127 ORTHO05D007465 4.5e-167 592.0 587 57.8
Sopen03g003570 Solanum pennellii HOM05D006127 ORTHO05D007465 7.7e-167 591.3 458 66.8
Peaxi162Scf00444g00314 Petunia axillaris HOM05D006127 ORTHO05D007465 8.5e-166 587.8 456 68.0
Carub.0008s2341 Capsella rubella HOM05D006127 ORTHO05D007465 1.9e-165 586.6 475 63.8
ClCG01G000890 Citrullus lanatus HOM05D006127 ORTHO05D007465 3.2e-165 585.9 523 60.6
AT5G62650 Arabidopsis thaliana HOM05D006127 ORTHO05D007465 5.5e-165 585.1 517 62.1
Nitab4.5_0001331g0020 Nicotiana tabacum HOM05D006127 ORTHO05D007465 7.2e-165 584.7 465 66.5
AL8G39630 Arabidopsis lyrata HOM05D006127 ORTHO05D007465 1.6e-164 583.6 519 61.1
CAN.G236.3 Capsicum annuum HOM05D006127 ORTHO05D007465 1.6e-164 583.6 456 66.4
MELO3C005842.2 Cucumis melo HOM05D006127 ORTHO05D007465 2.1e-164 583.2 524 59.5
Thhalv10003967m.g Eutrema salsugineum HOM05D006127 ORTHO05D007465 2.7e-164 582.8 517 60.7
Medtr6g053110 Medicago truncatula HOM05D006127 ORTHO05D007465 3.6e-164 582.4 536 60.4
Dinv28380 Davidia involucrata HOM05D006127 ORTHO05D007465 7.9e-164 581.3 528 60.2
CARHR276460 Cardamine hirsuta HOM05D006127 ORTHO05D007465 1.8e-163 580.1 514 60.7
Aqoxy7G00200 Aquilegia oxysepala HOM05D006127 ORTHO05D007465 5.1e-163 578.6 463 65.4
MSTRG.8699 Avicennia marina HOM05D006127 ORTHO05D007465 1.5e-162 577.0 529 59.0
Sp2g25830 Schrenkiella parvula HOM05D006127 ORTHO05D007465 2.0e-162 576.6 518 60.8
arahy.Tifrunner.gnm1.ann1.AR9FJK Arachis hypogaea HOM05D006127 ORTHO05D007465 1.3e-161 573.9 536 59.9
Sc13g0009280 Simmondsia chinensis HOM05D006127 ORTHO05D007465 2.8e-161 572.8 490 61.0
arahy.Tifrunner.gnm1.ann1.HXNP43 Arachis hypogaea HOM05D006127 ORTHO05D007465 8.2e-161 571.2 527 60.5
Lsat_1_v5_gn_9_56840 Lactuca sativa HOM05D006127 ORTHO05D007465 1.4e-160 570.5 456 64.5
Sed0008008 Sechium edule HOM05D006127 ORTHO05D007465 3.1e-160 569.3 523 58.5
Gohir.D09G177600 Gossypium hirsutum HOM05D006127 ORTHO05D007465 4.5e-159 565.5 528 60.0
Gorai.006G199600 Gossypium raimondii HOM05D006127 ORTHO05D007465 4.5e-159 565.5 528 60.0
HanXRQChr00c0486g0575011 Helianthus annuus HOM05D006127 ORTHO05D007465 4.5e-159 565.5 543 55.8
ECA232G4568 Erigeron canadensis HOM05D006127 ORTHO05D007465 5.9e-159 565.1 467 62.3
BraA06t25889Z Brassica rapa HOM05D006127 ORTHO05D007465 1.4e-157 560.5 514 59.5
BcaC01g02503 Brassica carinata HOM05D006127 ORTHO05D007465 3.2e-157 559.3 514 59.3
Glyma.16G177100 Glycine max HOM05D006127 ORTHO05D007465 3.2e-157 559.3 543 57.3
A06p29390 Brassica napus HOM05D006127 ORTHO05D007465 4.2e-157 558.9 514 59.5
Cc02_g02250 Coffea canephora HOM05D006127 ORTHO05D007465 5.5e-157 558.5 436 65.6
PSO266G0017 Papaver somniferum HOM05D006127 ORTHO05D007465 5.5e-157 558.5 459 61.7
PSO478G4852 Papaver somniferum HOM05D006127 ORTHO05D007465 1.2e-156 557.4 464 62.3
Migut.F00277 Erythranthe guttata HOM05D006127 ORTHO05D007465 1.6e-156 557.0 553 56.6
Lj1A1007G54 Lonicera japonica HOM05D006127 ORTHO05D007465 2.1e-156 556.6 477 61.8
Gohir.A09G182900 Gossypium hirsutum HOM05D006127 ORTHO05D007465 4.7e-156 555.4 523 59.3
C03p64120 Brassica napus HOM05D006127 ORTHO05D007465 6.1e-156 555.1 467 62.7
BolC3t18667H Brassica oleracea HOM05D006127 ORTHO05D007465 6.7e-155 551.6 514 58.8
EL10Ac3g05405 Beta vulgaris HOM05D006127 ORTHO05D007465 3.1e-152 542.7 464 62.9
GSVIVG01028824001 Vitis vinifera HOM05D006127 ORTHO05D007465 3.1e-152 542.7 425 64.9
BcaB02g09667 Brassica carinata HOM05D006127 ORTHO05D007465 5.3e-152 542.0 513 58.9
DCAR_008898 Daucus carota HOM05D006127 ORTHO05D007465 2.0e-151 540.0 485 58.6
AUR62031438 Chenopodium quinoa HOM05D006127 ORTHO05D007465 1.3e-150 537.3 445 63.4
Cpa.g.sc107.127 Carica papaya HOM05D006127 ORTHO05D007465 3.8e-150 535.8 454 63.7
HanXRQChr15g0494171 Helianthus annuus HOM05D006127 ORTHO05D007465 1.5e-149 533.9 517 56.7
Oeu003330.1 Olea europaea HOM05D006127 ORTHO05D007465 2.5e-149 533.1 412 65.5
Nn6g32416 Nelumbo nucifera HOM05D006127 ORTHO05D007465 9.4e-149 531.2 531 56.3
Ah.07g206460 Amaranthus hybridus HOM05D006127 ORTHO05D007465 1.5e-146 523.9 550 54.4
SGA_v2.0_scaffold60G21123 Striga asiatica HOM05D006127 ORTHO05D007465 7.5e-146 521.5 556 54.1
unitig_747.g21859 Utricularia gibba HOM05D006127 ORTHO05D007465 1.7e-145 520.4 516 55.2
ATR0721G168 Amborella trichopoda HOM05D006127 ORTHO05D007465 3.7e-137 492.7 507 53.3
Hund04798 Selenicereus undatus HOM05D006127 ORTHO05D007465 1.4e-136 490.7 645 47.3
CDE04G3725 Ceratophyllum demersum HOM05D006127 ORTHO05D007465 3.8e-134 482.6 489 53.4
Psat0s2186g0040 Pisum sativum HOM05D006127 ORTHO05D007465 2.5e-133 479.9 342 71.9
TPR.G9177 Trifolium pratense HOM05D006127 ORTHO05D007465 4.2e-133 479.2 332 73.5
vmacro06616 Vaccinium macrocarpon HOM05D006127 ORTHO05D007465 4.2e-133 479.2 497 54.7
Zm00001eb119480 Zea mays HOM05D006127 ORTHO05D007465 2.1e-132 476.9 515 52.0
AUR62021102 Chenopodium quinoa HOM05D006127 ORTHO05D007465 2.0e-130 470.3 458 57.4
Rhsim03G0192200 Rhododendron simsii HOM05D006127 ORTHO05D007465 2.8e-129 466.5 524 52.9
Ah.13g069260 Amaranthus hybridus HOM05D006127 ORTHO05D007465 5.4e-128 462.2 405 60.2
HPP92_008801 Vanilla planifolia HOM05D006127 ORTHO05D007465 2.3e-123 446.8 514 50.6
FAN01G1207 Fragaria x ananassa HOM05D006127 ORTHO05D007465 3.7e-121 439.5 232 95.7
VMungo0464G0768 Vigna mungo HOM05D006127 ORTHO05D007465 1.0e-102 378.3 286 69.2
Oeu027861.1 Olea europaea HOM05D006127 ORTHO05D007465 5.1e-102 375.9 441 49.4
BcaB02g09671 Brassica carinata HOM05D006127 ORTHO05D007465 9.9e-98 361.7 472 47.7
HPP92_005266 Vanilla planifolia HOM05D006127 ORTHO05D007465 1.9e-96 357.5 367 52.0
SGA_v2.0_scaffold192G40622 Striga asiatica HOM05D006127 ORTHO05D007465 9.3e-88 328.6 260 63.8
Nn1g01683 Nelumbo nucifera HOM05D006127 ORTHO05D007465 4.3e-85 319.7 553 40.1
CDE03G0317 Ceratophyllum demersum HOM05D006127 ORTHO05D007465 5.6e-85 319.3 277 57.0
Mapoly0009s0032 Marchantia polymorpha HOM05D006127 ORTHO05D007465 1.9e-69 267.7 529 36.3
AagrBONN_evm.TU.Sc2ySwM_368.2100 Anthoceros agrestis HOM05D006127 ORTHO05D007465 2.1e-68 264.2 368 41.8
Os01g0225300 Oryza sativa ssp. japonica HOM05D006127 ORTHO05D007465 2.9e-65 253.8 287 48.4
Pp3c17_22580 Physcomitrium patens HOM05D006127 ORTHO05D007465 6.9e-59 232.6 538 31.8
arahy.Tifrunner.gnm1.ann1.KML1I1 Arachis hypogaea HOM05D006127 ORTHO05D007465 5.1e-46 189.9 245 45.7
SEGI_03634 Sequoiadendron giganteum HOM05D006127 ORTHO05D007465 1.7e-36 158.3 132 56.8
SMO266G0103 Selaginella moellendorffii HOM05D006127 ORTHO05D007465 3.5e-34 150.6 194 37.1
AL8G39600 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 5.5e-32 143.3 95 72.6
Cfa002216 Carpinus fangiana HOM05D006127 ORTHO05D007465 4.8e-28 130.2 233 39.9
TPR.G27774 Trifolium pratense HOM05D006127 ORTHO05D007465 5.3e-27 126.7 163 49.1
TPR.G9175 Trifolium pratense HOM05D006127 ORTHO05D007465 1.3e-25 122.1 80 71.2
COL.COLO4_36023 Corchorus olitorius HOM05D006127 ORTHO05D161883 7.5e-21 106.3 63 77.8
SEGI_25179 Sequoiadendron giganteum HOM05D006127 ORTHO05D007465 4.4e-13 80.5 83 50.6
Ah.13g069250 Amaranthus hybridus HOM05D006127 ORTHO05D007465 3.7e-12 77.4 116 47.4
Aqoxy1G04253 Aquilegia oxysepala HOM05D006127 ORTHO05D078839 5.2e-06 57.0 49 63.3


User provided reference genes

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