Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G2259 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.8e-157 558.5 275 100.0
FAN03G2321 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.4e-156 555.4 275 98.9
FAN06G4414 Fragaria x ananassa HOM05D003837 ORTHO05D004751 6.9e-156 553.9 275 98.5
FAN10G2900 Fragaria x ananassa HOM05D003837 ORTHO05D004751 3.0e-151 538.5 275 97.5
FvH4_7g14620 Fragaria vesca HOM05D003837 ORTHO05D004751 5.7e-150 534.3 275 96.4
FAN06G1674 Fragaria x ananassa HOM05D003837 ORTHO05D004751 5.7e-150 534.3 275 96.4
FAN01G2145 Fragaria x ananassa HOM05D003837 ORTHO05D004751 3.7e-149 531.6 275 96.0
RcHm_v2.0_Chr1g0356141 Rosa chinensis HOM05D003837 ORTHO05D004751 1.9e-145 519.2 275 93.1
MD01G1065200 Malus domestica HOM05D003837 ORTHO05D004751 2.6e-134 482.3 275 84.7
FAN01G0904 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.7e-133 479.6 275 85.8
Gorai.004G042000 Gossypium raimondii HOM05D003837 ORTHO05D004751 2.4e-132 475.7 275 83.3
Thecc.01G357600 Theobroma cacao HOM05D003837 ORTHO05D004751 5.3e-132 474.6 275 82.5
Gohir.D08G043400 Gossypium hirsutum HOM05D003837 ORTHO05D004751 2.6e-131 472.2 275 82.5
Gohir.A08G032500 Gossypium hirsutum HOM05D003837 ORTHO05D004751 5.9e-131 471.1 275 82.9
MELO3C021202.2 Cucumis melo HOM05D003837 ORTHO05D004751 7.7e-131 470.7 276 83.0
Duzib138G0194 Durio zibethinus HOM05D003837 ORTHO05D004751 7.7e-131 470.7 275 81.8
Sed0000473 Sechium edule HOM05D003837 ORTHO05D004751 7.7e-131 470.7 275 82.5
Dinv43830 Davidia involucrata HOM05D003837 ORTHO05D004751 2.2e-130 469.2 275 82.9
PGSC0003DMG400006508 Solanum tuberosum HOM05D003837 ORTHO05D004751 1.9e-129 466.1 275 81.1
QL04p053649 Quercus lobata HOM05D003837 ORTHO05D004751 3.2e-129 465.3 274 81.0
Cc02_g38180 Coffea canephora HOM05D003837 ORTHO05D004751 5.5e-129 464.5 275 80.7
Glyma.18G234200 Glycine max HOM05D003837 ORTHO05D004751 7.2e-129 464.2 275 80.7
Potri.014G086100 Populus trichocarpa HOM05D003837 ORTHO05D004751 7.2e-129 464.2 275 80.7
Nitab4.5_0000386g0040 Nicotiana tabacum HOM05D003837 ORTHO05D004751 9.4e-129 463.8 275 80.7
Psat3g107800 Pisum sativum HOM05D003837 ORTHO05D004751 2.1e-128 462.6 275 79.6
Sabra14G0062400 Salix brachista HOM05D003837 ORTHO05D004751 2.1e-128 462.6 275 82.2
Ah.05g180500 Amaranthus hybridus HOM05D003837 ORTHO05D004751 4.7e-128 461.5 277 79.8
CiPaw.01G063000 Carya illinoinensis HOM05D003837 ORTHO05D004751 4.7e-128 461.5 275 80.7
Eucgr.E01551 Eucalyptus grandis HOM05D003837 ORTHO05D004751 4.7e-128 461.5 275 80.0
Manes.01G255600 Manihot esculenta HOM05D003837 ORTHO05D004751 4.7e-128 461.5 269 81.8
Phvul.008G061600 Phaseolus vulgaris HOM05D003837 ORTHO05D004751 4.7e-128 461.5 275 80.4
arahy.Tifrunner.gnm1.ann1.50MGD9 Arachis hypogaea HOM05D003837 ORTHO05D004751 8.0e-128 460.7 275 80.0
Solyc10g012410.3 Solanum lycopersicum HOM05D003837 ORTHO05D004751 8.0e-128 460.7 275 80.0
vmacro21886 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 8.0e-128 460.7 275 80.7
vmacro23130 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 8.0e-128 460.7 275 80.7
arahy.Tifrunner.gnm1.ann1.8FQY9T Arachis hypogaea HOM05D003837 ORTHO05D004751 1.0e-127 460.3 275 79.6
CANSAT56G1308 Cannabis sativa HOM05D003837 ORTHO05D004751 1.0e-127 460.3 275 80.4
Sopen10g006240 Solanum pennellii HOM05D003837 ORTHO05D004751 1.0e-127 460.3 275 79.6
arahy.Tifrunner.gnm1.ann1.LGM3J9 Arachis hypogaea HOM05D003837 ORTHO05D004751 1.8e-127 459.5 275 79.3
GSVIVG01026949001 Vitis vinifera HOM05D003837 ORTHO05D004751 1.8e-127 459.5 275 80.0
AUR62004375 Chenopodium quinoa HOM05D003837 ORTHO05D004751 3.9e-127 458.4 277 79.8
PGR042G3540 Punica granatum HOM05D003837 ORTHO05D004751 5.2e-127 458.0 276 80.4
AUR62022582 Chenopodium quinoa HOM05D003837 ORTHO05D004751 8.8e-127 457.2 277 79.1
Nitab4.5_0002811g0010 Nicotiana tabacum HOM05D003837 ORTHO05D004751 8.8e-127 457.2 275 79.6
CAN.G116.14 Capsicum annuum HOM05D003837 ORTHO05D004751 1.1e-126 456.8 275 80.0
Hma1.2p1_0780F.1_g216730 Hydrangea macrophylla HOM05D003837 ORTHO05D004751 1.5e-126 456.4 273 80.2
Medtr7g077870 Medicago truncatula HOM05D003837 ORTHO05D004751 1.5e-126 456.4 275 78.9
Rhsim01G0163300 Rhododendron simsii HOM05D003837 ORTHO05D004751 2.0e-126 456.1 275 80.7
EL10Ac1g00400 Beta vulgaris HOM05D003837 ORTHO05D004751 5.7e-126 454.5 280 79.3
TAR629G3438 Trochodendron aralioides HOM05D003837 ORTHO05D004751 9.7e-126 453.8 275 79.3
ECA236G1077 Erigeron canadensis HOM05D003837 ORTHO05D004751 1.7e-125 453.0 275 77.5
Thhalv10001586m.g Eutrema salsugineum HOM05D003837 ORTHO05D004751 1.7e-125 453.0 275 78.2
Sp4g28060 Schrenkiella parvula HOM05D003837 ORTHO05D004751 1.7e-125 453.0 275 79.3
Prupe.2G172200 Prunus persica HOM05D003837 ORTHO05D004751 2.2e-125 452.6 275 81.5
Atru.chr5.511 Acer truncatum HOM05D003837 ORTHO05D004751 2.8e-125 452.2 275 78.9
AL4G45220 Arabidopsis lyrata HOM05D003837 ORTHO05D004751 2.8e-125 452.2 275 78.9
Lj9A584G62 Lonicera japonica HOM05D003837 ORTHO05D004751 3.7e-125 451.8 274 79.2
arahy.Tifrunner.gnm1.ann1.MHF7VE Arachis hypogaea HOM05D003837 ORTHO05D004751 4.8e-125 451.4 275 78.2
Rhsim01G0190400 Rhododendron simsii HOM05D003837 ORTHO05D004751 4.8e-125 451.4 275 80.0
Oeu010619.1 Olea europaea HOM05D003837 ORTHO05D004751 6.3e-125 451.1 275 78.9
MSTRG.17276 Avicennia marina HOM05D003837 ORTHO05D004751 8.2e-125 450.7 275 77.8
Ca_07930_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 1.4e-124 449.9 287 75.3
Haze_15524 Corylus avellana HOM05D003837 ORTHO05D004751 1.8e-124 449.5 312 72.8
Migut.B01769 Erythranthe guttata HOM05D003837 ORTHO05D004751 1.8e-124 449.5 275 78.2
Lsat_1_v5_gn_7_4380 Lactuca sativa HOM05D003837 ORTHO05D004751 2.4e-124 449.1 272 77.9
FvH4_7g14540 Fragaria vesca HOM05D003837 ORTHO05D004751 3.1e-124 448.7 275 80.4
AT2G45990 Arabidopsis thaliana HOM05D003837 ORTHO05D004751 9.1e-124 447.2 275 78.5
Carub.0004s2869 Capsella rubella HOM05D003837 ORTHO05D004751 9.1e-124 447.2 275 77.8
SalBow3G2595 Salvia bowleyana HOM05D003837 ORTHO05D004751 1.2e-123 446.8 276 77.9
RcHm_v2.0_Chr1g0356101 Rosa chinensis HOM05D003837 ORTHO05D004751 2.0e-123 446.0 275 81.5
MBI18_g02839_MAGBIO Magnolia biondii HOM05D003837 ORTHO05D004751 4.5e-123 444.9 275 75.6
CARHR141260 Cardamine hirsuta HOM05D003837 ORTHO05D004751 5.9e-123 444.5 275 77.8
FAN06G3658 Fragaria x ananassa HOM05D003837 ORTHO05D004751 5.9e-123 444.5 275 81.8
FAN06G3536 Fragaria x ananassa HOM05D003837 ORTHO05D004751 7.7e-123 444.1 276 77.2
C04p06910 Brassica napus HOM05D003837 ORTHO05D004751 1.3e-122 443.4 276 77.9
Aa31LG1G27400 Aethionema arabicum HOM05D003837 ORTHO05D004751 1.7e-122 443.0 275 77.1
BcaC02g12159 Brassica carinata HOM05D003837 ORTHO05D004751 2.9e-122 442.2 276 77.5
FAN06G0309 Fragaria x ananassa HOM05D003837 ORTHO05D004751 6.5e-122 441.0 275 81.1
A05p05980 Brassica napus HOM05D003837 ORTHO05D004751 8.5e-122 440.7 276 77.5
DCAR_025196 Daucus carota HOM05D003837 ORTHO05D004751 1.5e-121 439.9 275 78.2
PSO017G1131 Papaver somniferum HOM05D003837 ORTHO05D004751 1.9e-121 439.5 275 76.4
FAN01G2925 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.5e-121 439.1 276 77.2
BraA05t19561Z Brassica rapa HOM05D003837 ORTHO05D004751 3.2e-121 438.7 276 77.2
Ciclev10021689m.g Citrus clementina HOM05D003837 ORTHO05D004751 4.2e-121 438.3 275 76.7
Migut.B01768 Erythranthe guttata HOM05D003837 ORTHO05D004751 4.2e-121 438.3 277 76.2
FAN06G3952 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.2e-120 436.8 276 76.4
ClCG06G003610 Citrullus lanatus HOM05D003837 ORTHO05D004751 1.6e-120 436.4 275 78.2
Lalb_Chr10g0095951 Lupinus albus HOM05D003837 ORTHO05D004751 2.1e-120 436.0 273 79.1
arahy.Tifrunner.gnm1.ann1.AX1MHW Arachis hypogaea HOM05D003837 ORTHO05D004751 2.7e-120 435.6 275 76.4
CsaV3_6G000640 Cucumis sativus L. HOM05D003837 ORTHO05D004751 1.0e-119 433.7 275 78.2
BolC4t22312H Brassica oleracea HOM05D003837 ORTHO05D004751 1.8e-119 433.0 292 73.6
Lalb_Chr04g0253801 Lupinus albus HOM05D003837 ORTHO05D004751 2.3e-119 432.6 273 75.8
PSO063G2236 Papaver somniferum HOM05D003837 ORTHO05D004751 3.0e-119 432.2 266 77.8
Lj1g0003798 Lotus japonicus HOM05D003837 ORTHO05D004751 4.0e-119 431.8 275 76.4
TPR.G37852 Trifolium pratense HOM05D003837 ORTHO05D004751 5.2e-119 431.4 275 75.3
Psat3g107760 Pisum sativum HOM05D003837 ORTHO05D004751 2.6e-118 429.1 275 75.6
unitig_61.g26385 Utricularia gibba HOM05D003837 ORTHO05D004751 2.6e-118 429.1 274 75.2
HPP92_025965 Vanilla planifolia HOM05D003837 ORTHO05D004751 3.4e-118 428.7 275 74.9
Cpa.g.sc11.20 Carica papaya HOM05D003837 ORTHO05D004751 4.4e-118 428.3 275 76.4
CANSAT56G2444 Cannabis sativa HOM05D003837 ORTHO05D004751 9.8e-118 427.2 275 75.6
Glyma.18G234300 Glycine max HOM05D003837 ORTHO05D004751 1.3e-117 426.8 275 74.5
arahy.Tifrunner.gnm1.ann1.1HB2SZ Arachis hypogaea HOM05D003837 ORTHO05D004751 1.7e-117 426.4 275 73.8
TPR.G37767 Trifolium pratense HOM05D003837 ORTHO05D004751 4.8e-117 424.9 275 74.5
arahy.Tifrunner.gnm1.ann1.SJDP6S Arachis hypogaea HOM05D003837 ORTHO05D004751 6.3e-117 424.5 275 73.8
Ciclev10021690m.g Citrus clementina HOM05D003837 ORTHO05D004751 6.3e-117 424.5 275 75.6
THA.LOC104802037 Tarenaya hassleriana HOM05D003837 ORTHO05D004751 2.4e-116 422.5 275 76.0
VMungo1383G2611 Vigna mungo HOM05D003837 ORTHO05D004751 2.4e-116 422.5 274 74.5
Medtr7g077880 Medicago truncatula HOM05D003837 ORTHO05D004751 3.1e-116 422.2 275 73.5
TWI14G0320 Tripterygium wilfordii HOM05D003837 ORTHO05D004751 1.2e-115 420.2 275 75.6
FAN10G0266 Fragaria x ananassa HOM05D003837 ORTHO05D004751 3.5e-115 418.7 276 75.4
FAN10G3579 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.0e-114 417.2 276 75.0
VMungo1383G0868 Vigna mungo HOM05D003837 ORTHO05D004751 1.0e-114 417.2 275 74.9
Cfa003906 Carpinus fangiana HOM05D003837 ORTHO05D004751 3.8e-114 415.2 258 77.9
FAN16G2327 Fragaria x ananassa HOM05D003837 ORTHO05D004751 5.0e-114 414.8 277 72.9
FvH4_3g44250 Fragaria vesca HOM05D003837 ORTHO05D004751 1.1e-113 413.7 277 72.9
Ca_07931_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 1.5e-113 413.3 275 72.4
Actinidia02836 Actinidia chinensis HOM05D003837 ORTHO05D004751 2.5e-113 412.5 281 74.0
Phvul.008G061500 Phaseolus vulgaris HOM05D003837 ORTHO05D004751 2.5e-113 412.5 273 73.3
FAN11G2601 Fragaria x ananassa HOM05D003837 ORTHO05D004751 4.2e-113 411.8 277 72.6
arahy.Tifrunner.gnm1.ann1.I86G4G Arachis hypogaea HOM05D003837 ORTHO05D004751 7.2e-113 411.0 250 79.6
SEGI_21942 Sequoiadendron giganteum HOM05D003837 ORTHO05D004751 2.7e-112 409.1 275 71.3
COL.COLO4_12726 Corchorus olitorius HOM05D003837 ORTHO05D004751 6.8e-111 404.4 275 74.2
CDE05G2325 Ceratophyllum demersum HOM05D003837 ORTHO05D004751 1.2e-110 403.7 272 71.0
HanXRQChr04g0121181 Helianthus annuus HOM05D003837 ORTHO05D004751 1.2e-110 403.7 275 71.3
Os07g0418000 Oryza sativa ssp. japonica HOM05D003837 ORTHO05D004751 1.7e-109 399.8 274 67.9
RcHm_v2.0_Chr1g0356011 Rosa chinensis HOM05D003837 ORTHO05D004751 1.8e-108 396.4 276 71.0
Hund27264 Selenicereus undatus HOM05D003837 ORTHO05D004751 4.1e-108 395.2 275 70.2
Zm00001eb094870 Zea mays HOM05D003837 ORTHO05D004751 7.0e-108 394.4 274 66.8
RcHm_v2.0_Chr1g0356041 Rosa chinensis HOM05D003837 ORTHO05D004751 2.7e-107 392.5 276 70.7
ATR0680G377 Amborella trichopoda HOM05D003837 ORTHO05D004751 5.9e-107 391.3 241 76.8
HanXRQChr04g0121171 Helianthus annuus HOM05D003837 ORTHO05D004751 5.9e-107 391.3 275 68.7
Peaxi162Scf00008g02421 Petunia axillaris HOM05D003837 ORTHO05D004751 5.0e-106 388.3 275 71.3
Lj1g0022323 Lotus japonicus HOM05D003837 ORTHO05D004751 8.6e-106 387.5 242 78.9
RcHm_v2.0_Chr1g0356051 Rosa chinensis HOM05D003837 ORTHO05D004751 1.9e-105 386.3 277 70.4
Pp3c11_2170 Physcomitrium patens HOM05D003837 ORTHO05D004751 9.5e-105 384.0 276 66.3
SMO118G0280 Selaginella moellendorffii HOM05D003837 ORTHO05D004751 4.7e-104 381.7 273 66.7
AagrBONN_evm.TU.Sc2ySwM_228.2910 Anthoceros agrestis HOM05D003837 ORTHO05D004751 6.1e-104 381.3 276 66.3
RcHm_v2.0_Chr1g0355961 Rosa chinensis HOM05D003837 ORTHO05D004751 1.4e-103 380.2 277 69.0
Nn1g01565 Nelumbo nucifera HOM05D003837 ORTHO05D004751 8.9e-103 377.5 275 67.3
AagrBONN_evm.TU.Sc2ySwM_228.5133 Anthoceros agrestis HOM05D003837 ORTHO05D004751 1.2e-102 377.1 275 66.2
arahy.Tifrunner.gnm1.ann1.438NR4 Arachis hypogaea HOM05D003837 ORTHO05D004751 3.4e-102 375.6 278 69.1
Ca_07932_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 4.4e-102 375.2 275 66.2
Pp3c23_10590 Physcomitrium patens HOM05D003837 ORTHO05D004751 4.4e-102 375.2 277 66.1
Mapoly0002s0196 Marchantia polymorpha HOM05D003837 ORTHO05D004751 8.3e-101 370.9 276 65.9
Atru.chr5.512 Acer truncatum HOM05D003837 ORTHO05D004751 5.9e-99 364.8 218 80.7
Pp3c24_7060 Physcomitrium patens HOM05D003837 ORTHO05D004751 2.2e-93 346.3 255 64.7
FAN10G2608 Fragaria x ananassa HOM05D003837 ORTHO05D004751 3.2e-92 342.4 195 85.1
AUR62004376 Chenopodium quinoa HOM05D003837 ORTHO05D004751 7.0e-92 341.3 217 77.0
CBR_g30756 Chara braunii HOM05D003837 ORTHO05D004751 5.6e-89 331.6 301 56.8
Actinidia02835 Actinidia chinensis HOM05D003837 ORTHO05D004751 3.6e-88 328.9 203 79.3
Glyma.09G258500 Glycine max HOM05D003837 ORTHO05D004751 1.8e-87 326.6 223 74.0
Sc26g0000870 Simmondsia chinensis HOM05D003837 ORTHO05D004751 1.7e-85 320.1 193 79.8
SMO118G0457 Selaginella moellendorffii HOM05D003837 ORTHO05D004751 1.7e-74 283.5 275 52.4
FAN10G2382 Fragaria x ananassa HOM05D003837 ORTHO05D004751 9.0e-63 244.6 133 86.5
RcHm_v2.0_Chr1g0356441 Rosa chinensis HOM05D003837 ORTHO05D004751 1.5e-62 243.8 188 72.3
FvH4_7g14570 Fragaria vesca HOM05D003837 ORTHO05D004751 3.4e-62 242.7 149 81.9
CSS0003015 Camellia sinensis var. sinensis HOM05D003837 ORTHO05D004751 9.3e-60 234.6 192 60.4
vmacro20932 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 4.0e-55 219.2 187 63.1
Cre06.g278117 Chlamydomonas reinhardtii HOM05D003837 ORTHO05D004751 2.9e-53 213.0 271 42.8
Glyma.09G258400 Glycine max HOM05D003837 ORTHO05D004751 1.8e-50 203.8 127 74.0
MCO05G263 Micromonas commoda HOM05D003837 ORTHO05D004751 7.4e-49 198.4 273 41.4
SGA_v2.0_scaffold95G28830 Striga asiatica HOM05D003837 ORTHO05D004751 9.3e-44 181.4 275 40.4
Cre13.g578900 Chlamydomonas reinhardtii HOM05D003837 ORTHO05D004751 2.6e-38 163.3 284 35.9
FvH4_7g14571 Fragaria vesca HOM05D003837 ORTHO05D004751 4.5e-38 162.5 88 88.6
MD09G1245400 Malus domestica HOM05D003837 ORTHO05D004751 2.7e-35 153.3 82 87.8
MD09G1245300 Malus domestica HOM05D003837 ORTHO05D004751 2.4e-31 140.2 83 84.3
Glyma.04G165300 Glycine max HOM05D003837 ORTHO05D004751 2.6e-30 136.7 109 63.3
arahy.Tifrunner.gnm1.ann1.B43A3C Arachis hypogaea HOM05D003837 ORTHO05D004751 1.1e-28 131.3 101 60.4
RcHm_v2.0_Chr1g0356021 Rosa chinensis HOM05D003837 ORTHO05D004751 2.8e-24 116.7 108 57.4
arahy.Tifrunner.gnm1.ann1.DBMD67 Arachis hypogaea HOM05D003837 ORTHO05D004751 3.7e-24 116.3 68 79.4
Actinidia37295 Actinidia chinensis HOM05D003837 ORTHO05D004751 1.7e-21 107.5 69 73.9
Ciclev10006592m.g Citrus clementina HOM05D003837 ORTHO05D033091 8.8e-18 95.1 73 60.3
Ciclev10013186m.g Citrus clementina HOM05D003837 ORTHO05D004751 1.4e-15 87.8 70 58.6
A06p08350 Brassica napus HOM05D003837 ORTHO05D099682 9.1e-15 85.1 68 61.8
BolC9t54120H Brassica oleracea HOM05D003837 ORTHO05D033622 9.4e-12 75.1 60 61.7
BolC7t40474H Brassica oleracea HOM05D003837 ORTHO05D033622 1.6e-11 74.3 60 60.0
AUR62043290 Chenopodium quinoa HOM05D008055 ORTHO05D009927 1.8e-10 70.9 60 53.3
A05p05950 Brassica napus HOM05D003837 ORTHO05D033091 6.7e-10 68.9 55 60.0
BraA05t19558Z Brassica rapa HOM05D003837 ORTHO05D033091 6.7e-10 68.9 55 60.0
C09p56440 Brassica napus HOM05D003837 ORTHO05D101394 4.8e-08 62.8 54 59.3
Ciclev10003222m.g Citrus clementina HOM05D003684 ORTHO05D004428 9.1e-07 58.5 40 65.0


User provided reference genes

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