Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G2253 Fragaria x ananassa HOM05D003962 ORTHO05D004714 0.0e+00 1955.3 1207 100.0
FAN10G3613 Fragaria x ananassa HOM05D003962 ORTHO05D004714 0.0e+00 1847.8 1207 95.9
FvH4_7g31740 Fragaria vesca HOM05D003962 ORTHO05D004714 0.0e+00 1802.3 1215 92.2
FAN06G4230 Fragaria x ananassa HOM05D003962 ORTHO05D004714 0.0e+00 1756.5 1215 90.5
FAN06G4429 Fragaria x ananassa HOM05D003962 ORTHO05D004714 0.0e+00 1756.1 1215 90.5
FAN01G0781 Fragaria x ananassa HOM05D003962 ORTHO05D004714 0.0e+00 1753.8 1210 92.9
FAN03G1461 Fragaria x ananassa HOM05D003962 ORTHO05D004714 0.0e+00 1725.3 1211 92.0
RcHm_v2.0_Chr1g0380961 Rosa chinensis HOM05D003962 ORTHO05D004714 0.0e+00 1480.7 1231 79.7
MD01G1219900 Malus domestica HOM05D003962 ORTHO05D004714 4.3e-303 1045.0 1252 64.5
Prupe.2G311300 Prunus persica HOM05D003962 ORTHO05D004714 3.1e-301 1038.9 1251 63.9
MD07G1290200 Malus domestica HOM05D003962 ORTHO05D004714 1.1e-274 950.7 1272 58.6
Cfa016250 Carpinus fangiana HOM05D003962 ORTHO05D004714 4.3e-226 789.3 1269 51.9
QL09p009481 Quercus lobata HOM05D003962 ORTHO05D004714 3.8e-222 776.2 1328 49.3
CiPaw.05G251700 Carya illinoinensis HOM05D003962 ORTHO05D004714 8.7e-219 765.0 1264 51.9
CANSAT21G2091 Cannabis sativa HOM05D003962 ORTHO05D004714 5.3e-216 755.7 1265 52.6
CiPaw.06G010000 Carya illinoinensis HOM05D003962 ORTHO05D004714 1.9e-194 684.1 1269 48.1
Haze_00190 Corylus avellana HOM05D003962 ORTHO05D004714 3.3e-194 683.3 1079 44.3
Thecc.03G196300 Theobroma cacao HOM05D003962 ORTHO05D004714 1.3e-193 681.4 1256 48.5
TWI23G0430 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 3.4e-191 673.3 1270 47.2
Ciclev10004179m.g Citrus clementina HOM05D003962 ORTHO05D004714 4.6e-188 662.9 1251 48.8
Duzib205G1946 Durio zibethinus HOM05D003962 ORTHO05D004714 3.9e-187 659.8 1254 46.2
COL.COLO4_11264 Corchorus olitorius HOM05D003962 ORTHO05D004714 6.3e-185 652.5 1250 40.6
Duzib084G0525 Durio zibethinus HOM05D003962 ORTHO05D004714 6.3e-185 652.5 1249 46.0
Atru.chr1.164 Acer truncatum HOM05D003962 ORTHO05D004714 5.3e-184 649.4 1264 49.5
TWI39G0414 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 3.2e-181 640.2 1260 46.9
Duzib068G0757 Durio zibethinus HOM05D003962 ORTHO05D004714 2.7e-180 637.1 1251 46.5
Potri.012G013800 Populus trichocarpa HOM05D003962 ORTHO05D004714 1.2e-175 621.7 1236 44.6
Potri.015G014800 Populus trichocarpa HOM05D003962 ORTHO05D004714 2.9e-174 617.1 1247 44.7
TWI14G0330 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 5.7e-170 602.8 1269 41.6
Cpa.g.sc3.71 Carica papaya HOM05D003962 ORTHO05D004714 2.2e-169 600.9 1292 46.5
Gorai.007G015000 Gossypium raimondii HOM05D003962 ORTHO05D004714 3.7e-169 600.1 1244 47.5
Duzib205G1416 Durio zibethinus HOM05D003962 ORTHO05D004714 8.2e-169 599.0 819 46.3
Gohir.D11G014600 Gossypium hirsutum HOM05D003962 ORTHO05D004714 7.0e-168 595.9 1242 46.6
Sabra15G0011900 Salix brachista HOM05D003962 ORTHO05D004714 1.2e-167 595.1 1025 45.1
VMungo1309G1284 Vigna mungo HOM05D003962 ORTHO05D004714 2.6e-167 594.0 1261 41.1
Manes.14G006600 Manihot esculenta HOM05D003962 ORTHO05D004714 1.5e-165 588.2 1021 48.8
Sabra12G0018000 Salix brachista HOM05D003962 ORTHO05D004714 1.8e-163 581.3 1243 43.1
Eucgr.A01465 Eucalyptus grandis HOM05D003962 ORTHO05D004714 2.2e-161 574.3 1247 43.4
Glyma.04G236700 Glycine max HOM05D003962 ORTHO05D004714 4.1e-160 570.1 1237 41.8
Gohir.A11G014500 Gossypium hirsutum HOM05D003962 ORTHO05D004714 4.1e-160 570.1 1244 46.6
Glyma.06G127600 Glycine max HOM05D003962 ORTHO05D004714 1.3e-158 565.1 1242 43.7
Gohir.A11G014600 Gossypium hirsutum HOM05D003962 ORTHO05D004714 7.2e-157 559.3 1245 45.3
Gohir.D11G014700 Gossypium hirsutum HOM05D003962 ORTHO05D004714 9.4e-157 558.9 1243 45.9
Manes.06G159800 Manihot esculenta HOM05D003962 ORTHO05D004714 3.8e-150 537.0 1246 43.5
arahy.Tifrunner.gnm1.ann1.JYM9I0 Arachis hypogaea HOM05D003962 ORTHO05D004714 8.8e-147 525.8 1250 40.5
Ca_16697_v3 Cicer arietinum L. HOM05D003962 ORTHO05D004714 5.7e-146 523.1 1231 37.4
Phvul.009G053600 Phaseolus vulgaris HOM05D003962 ORTHO05D004714 2.2e-145 521.2 1274 40.0
arahy.Tifrunner.gnm1.ann1.897SEY Arachis hypogaea HOM05D003962 ORTHO05D004714 1.2e-140 505.4 1252 41.1
Medtr3g091280 Medicago truncatula HOM05D003962 ORTHO05D004714 6.1e-140 503.1 1189 41.3
Lj1g0008504 Lotus japonicus HOM05D003962 ORTHO05D004714 3.0e-139 500.7 1152 42.0
Lalb_Chr23g0271551 Lupinus albus HOM05D003962 ORTHO05D004714 1.2e-138 498.8 1255 38.9
Lalb_Chr08g0240331 Lupinus albus HOM05D003962 ORTHO05D004714 4.6e-135 486.9 1239 40.1
Psat5g078120 Pisum sativum HOM05D003962 ORTHO05D004714 5.0e-134 483.4 1243 40.0
ClCG01G000470 Citrullus lanatus HOM05D003962 ORTHO05D004714 2.1e-132 478.0 1299 39.7
Nn1g01866 Nelumbo nucifera HOM05D003962 ORTHO05D004714 2.1e-132 478.0 1322 34.9
GSVIVG01038709001 Vitis vinifera HOM05D003962 ORTHO05D004714 6.8e-131 473.0 1323 40.4
CsaV3_5G000540 Cucumis sativus L. HOM05D003962 ORTHO05D004714 1.4e-128 465.3 1291 39.3
TAR374G0911 Trochodendron aralioides HOM05D003962 ORTHO05D004714 7.8e-127 459.5 1274 34.4
Sed0023111 Sechium edule HOM05D003962 ORTHO05D004714 3.9e-126 457.2 1259 39.0
MELO3C005882.2 Cucumis melo HOM05D003962 ORTHO05D004714 3.3e-125 454.1 1300 38.5
Lalb_Chr11g0066791 Lupinus albus HOM05D003962 ORTHO05D004714 9.5e-125 452.6 824 38.8
PGR042G1008 Punica granatum HOM05D003962 ORTHO05D004714 4.0e-123 447.2 1261 38.8
TPR.G17287 Trifolium pratense HOM05D003962 ORTHO05D004714 1.5e-122 445.3 1263 36.6
THA.LOC104800296 Tarenaya hassleriana HOM05D003962 ORTHO05D004714 3.4e-114 417.5 1075 43.3
EL10Ac3g05299 Beta vulgaris HOM05D003962 ORTHO05D004714 3.2e-112 411.0 1269 37.1
Sed0017272 Sechium edule HOM05D003962 ORTHO05D004714 6.0e-111 406.8 830 37.5
TAR629G3347 Trochodendron aralioides HOM05D003962 ORTHO05D004714 1.0e-110 406.0 802 38.2
TAR636G0021 Trochodendron aralioides HOM05D003962 ORTHO05D004714 3.0e-110 404.4 830 38.2
Sp6g15570 Schrenkiella parvula HOM05D003962 ORTHO05D004714 4.3e-109 400.6 1270 41.1
Dinv37529 Davidia involucrata HOM05D003962 ORTHO05D004714 2.8e-108 397.9 834 37.8
GSVIVG01019537001 Vitis vinifera HOM05D003962 ORTHO05D005685 6.8e-107 393.3 1132 37.7
CSS0043367 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 1.1e-104 386.0 1352 37.5
AUR62006109 Chenopodium quinoa HOM05D003962 ORTHO05D004714 5.4e-104 383.6 1251 33.8
Nn3g19007 Nelumbo nucifera HOM05D003962 ORTHO05D004714 1.7e-102 378.6 1183 32.5
Gorai.007G015100 Gossypium raimondii HOM05D003962 ORTHO05D004714 1.1e-101 375.9 622 42.6
Cc08_g16110 Coffea canephora HOM05D003962 ORTHO05D004714 7.6e-98 363.2 828 36.0
Dinv38828 Davidia involucrata HOM05D003962 ORTHO05D004714 1.3e-97 362.5 1278 36.7
AL8G28140 Arabidopsis lyrata HOM05D003962 ORTHO05D004714 4.9e-97 360.5 1294 38.2
Carub.0008s1360 Capsella rubella HOM05D003962 ORTHO05D004714 9.3e-96 356.3 1285 40.3
AT5G53440 Arabidopsis thaliana HOM05D003962 ORTHO05D004714 7.9e-95 353.2 1312 37.6
Ah.07g205820 Amaranthus hybridus HOM05D003962 ORTHO05D004714 5.1e-94 350.5 1031 39.7
CSS0016674 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 8.7e-94 349.7 744 37.1
Ah.13g070110 Amaranthus hybridus HOM05D003962 ORTHO05D004714 6.2e-92 343.6 1257 36.4
TAR375G1139 Trochodendron aralioides HOM05D003962 ORTHO05D004714 1.4e-91 342.4 490 43.3
DCAR_029893 Daucus carota HOM05D003962 ORTHO05D004714 1.8e-91 342.0 831 34.7
Aqoxy7G00097 Aquilegia oxysepala HOM05D003962 ORTHO05D004714 4.0e-91 340.9 1348 31.0
Hma1.2p1_0359F.1_g135210 Hydrangea macrophylla HOM05D003962 ORTHO05D004714 4.0e-91 340.9 824 35.6
Thhalv10012484m.g Eutrema salsugineum HOM05D003962 ORTHO05D004714 4.5e-90 337.4 1287 36.8
CARHR266560 Cardamine hirsuta HOM05D003962 ORTHO05D004714 7.6e-90 336.7 1108 39.4
AUR62019379 Chenopodium quinoa HOM05D003962 ORTHO05D004714 8.4e-89 333.2 1256 31.7
BolC3t14179H Brassica oleracea HOM05D003962 ORTHO05D004714 2.1e-87 328.6 820 35.6
PSO063G5170 Papaver somniferum HOM05D003962 ORTHO05D004714 1.3e-86 325.9 1055 32.4
BcaC01g06252 Brassica carinata HOM05D003962 ORTHO05D004714 2.3e-86 325.1 820 35.4
A03p15150 Brassica napus HOM05D003962 ORTHO05D004714 2.3e-86 325.1 820 35.4
BraA03t10810Z Brassica rapa HOM05D003962 ORTHO05D004714 1.1e-85 322.8 819 35.2
C03p17680 Brassica napus HOM05D003962 ORTHO05D004714 1.5e-85 322.4 820 35.5
BcaNung06205 Brassica carinata HOM05D003962 ORTHO05D004714 2.5e-85 321.6 818 35.7
Aa31sc139G70 Aethionema arabicum HOM05D003962 ORTHO05D004714 3.3e-85 321.2 1094 40.1
PSO170G0250 Papaver somniferum HOM05D003962 ORTHO05D004714 4.3e-85 320.9 1089 31.4
PSO384G0521 Papaver somniferum HOM05D003962 ORTHO05D004714 1.7e-81 308.9 603 39.0
PSO135G0074 Papaver somniferum HOM05D003962 ORTHO05D004714 8.4e-81 306.6 603 38.5
THA.LOC104825141 Tarenaya hassleriana HOM05D003962 ORTHO05D004714 1.9e-77 295.4 1025 35.1
MBI07_g07101_MAGBIO Magnolia biondii HOM05D003962 ORTHO05D004714 4.3e-77 294.3 615 35.8
Actinidia22731 Actinidia chinensis HOM05D003962 ORTHO05D004714 5.7e-77 293.9 780 32.9
CAN.G1804.9 Capsicum annuum HOM05D003962 ORTHO05D004714 5.7e-77 293.9 848 32.9
vmacro11467 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 1.3e-76 292.7 819 33.7
PGSC0003DMG400012278 Solanum tuberosum HOM05D003962 ORTHO05D004714 2.8e-76 291.6 686 35.1
Lj2A167T45 Lonicera japonica HOM05D003962 ORTHO05D004714 3.7e-76 291.2 1315 32.4
Rhsim02G0244100 Rhododendron simsii HOM05D003962 ORTHO05D004714 1.8e-75 288.9 810 33.6
Sc19g0000840 Simmondsia chinensis HOM05D003962 ORTHO05D004714 9.0e-75 286.6 1160 37.6
Solyc08g082410.4 Solanum lycopersicum HOM05D003962 ORTHO05D004714 1.3e-73 282.7 715 33.7
MSTRG.13886 Avicennia marina HOM05D003962 ORTHO05D004714 1.7e-73 282.3 819 32.2
SalBow1G2835 Salvia bowleyana HOM05D003962 ORTHO05D004714 2.2e-73 282.0 777 33.8
SalBow1G4038 Salvia bowleyana HOM05D003962 ORTHO05D004714 2.2e-73 282.0 777 33.8
Actinidia27315 Actinidia chinensis HOM05D003962 ORTHO05D004714 5.0e-73 280.8 629 34.8
Nitab4.5_0002944g0030 Nicotiana tabacum HOM05D003962 ORTHO05D004714 3.2e-72 278.1 830 31.9
Oeu063516.1 Olea europaea HOM05D003962 ORTHO05D004714 4.6e-71 274.2 828 30.8
CSS0006905 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 7.9e-71 273.5 662 33.8
MSTRG.25678 Avicennia marina HOM05D003962 ORTHO05D004714 1.9e-69 268.9 829 32.0
Peaxi162Scf00074g00821 Petunia axillaris HOM05D003962 ORTHO05D004714 7.4e-69 266.9 791 33.4
MBI06_g08468_MAGBIO Magnolia biondii HOM05D003962 ORTHO05D004714 1.3e-68 266.2 1312 32.6
Oeu054025.1 Olea europaea HOM05D003962 ORTHO05D004714 1.5e-66 259.2 836 31.8
Nitab4.5_0007367g0070 Nicotiana tabacum HOM05D003962 ORTHO05D004714 1.0e-65 256.5 813 31.1
Migut.A00639 Erythranthe guttata HOM05D003962 ORTHO05D004714 3.2e-64 251.5 1356 33.6
Thhalv10026934m.g Eutrema salsugineum HOM05D003962 ORTHO05D004714 7.2e-64 250.4 600 35.7
Sc25g0000880 Simmondsia chinensis HOM05D003962 ORTHO05D004714 7.4e-61 240.4 1332 33.8
Actinidia04199 Actinidia chinensis HOM05D003962 ORTHO05D004714 1.4e-59 236.1 1341 32.8
SGA_v2.0_scaffold96G29015 Striga asiatica HOM05D003962 ORTHO05D004714 3.8e-57 228.0 869 28.3
SHI02385 Sapria himalayana HOM05D003962 ORTHO05D004714 5.0e-57 227.6 464 38.4
SGA_v2.0_scaffold305G47981 Striga asiatica HOM05D003962 ORTHO05D004714 7.2e-56 223.8 843 29.1
Rhsim02G0244200 Rhododendron simsii HOM05D003962 ORTHO05D004714 2.1e-55 222.2 622 33.0
vmacro11361 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 8.8e-54 216.9 735 31.0
Oeu009961.1 Olea europaea HOM05D003962 ORTHO05D004714 2.0e-53 215.7 1307 28.8
ECA246G1296 Erigeron canadensis HOM05D003962 ORTHO05D004714 7.4e-53 213.8 811 29.7
ATR0602G039 Amborella trichopoda HOM05D003962 ORTHO05D004714 1.2e-50 206.5 650 30.8
Oeu058004.1 Olea europaea HOM05D003962 ORTHO05D004714 9.7e-45 186.8 419 35.8
Os01g0655400 Oryza sativa ssp. japonica HOM05D003962 ORTHO05D004714 2.0e-42 179.1 620 30.5
DCAR_006489 Daucus carota HOM05D003962 ORTHO05D004714 3.5e-42 178.3 776 28.2
Nitab4.5_0006775g0080 Nicotiana tabacum HOM05D003962 ORTHO05D004714 3.5e-42 178.3 763 28.0
Prupe.5G120600 Prunus persica HOM05D003962 ORTHO05D004714 1.3e-41 176.4 707 28.9
Zm00001eb359440 Zea mays HOM05D003962 ORTHO05D004714 2.9e-41 175.3 877 28.5
HanXRQChr06g0166431 Helianthus annuus HOM05D003962 ORTHO05D004714 3.6e-39 168.3 624 30.0
CDE10G0926 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 2.2e-33 149.1 667 27.9
HPP92_024026 Vanilla planifolia HOM05D003962 ORTHO05D004714 2.7e-31 142.1 536 27.8
CDE10G1062 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 3.6e-31 141.7 693 26.4
Nitab4.5_0001210g0080 Nicotiana tabacum HOM05D003962 ORTHO05D004714 3.6e-31 141.7 743 25.6
CDE09G1087 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 1.2e-29 136.7 601 27.0
HanXRQChr17g0534811 Helianthus annuus HOM05D003962 ORTHO05D004714 2.0e-29 136.0 1035 29.5
Zm00001eb158050 Zea mays HOM05D003962 ORTHO05D004714 2.6e-29 135.6 795 25.5
CDE02G1812 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 1.7e-25 122.9 601 25.5
unitig_88.g27642 Utricularia gibba HOM05D003962 ORTHO05D004714 8.9e-22 110.5 541 28.7
unitig_0.g2842 Utricularia gibba HOM05D003962 ORTHO05D004714 7.0e-19 100.9 405 30.1
SEGI_14221 Sequoiadendron giganteum HOM05D003962 ORTHO05D004714 1.2e-18 100.1 755 24.9
ECA233G2741 Erigeron canadensis HOM05D003962 ORTHO05D004714 6.2e-15 87.8 362 27.6
Lsat_1_v5_gn_3_10880 Lactuca sativa HOM05D003962 ORTHO05D004714 3.1e-14 85.5 1058 29.0
SEGI_41344 Sequoiadendron giganteum HOM05D003962 ORTHO05D004714 2.7e-10 72.4 756 23.1
SHI02387 Sapria himalayana HOM05D003962 ORTHO05D004714 1.0e-09 70.5 133 48.9
TAR375G1118 Trochodendron aralioides HOM05D003962 ORTHO05D004714 5.6e-08 64.7 538 27.0
vmacro11359 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 2.1e-07 62.8 160 32.5
vmacro11465 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 2.1e-07 62.8 160 32.5
C06p30100 Brassica napus HOM05D003962 ORTHO05D032564 2.8e-07 62.4 129 39.5
BolC6t38171H Brassica oleracea HOM05D003962 ORTHO05D032564 2.8e-07 62.4 129 39.5
BcaC08g45378 Brassica carinata HOM05D003962 ORTHO05D032564 1.8e-06 59.7 95 44.2


User provided reference genes

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