Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G2247 Fragaria x ananassa HOM05D006780 ORTHO05D008455 6.8e-142 507.3 253 100.0
FAN10G0287 Fragaria x ananassa HOM05D006780 ORTHO05D008455 3.4e-141 505.0 253 99.6
FvH4_7g33420 Fragaria vesca HOM05D006780 ORTHO05D008455 1.2e-138 496.5 253 98.0
FAN03G1919 Fragaria x ananassa HOM05D006780 ORTHO05D008455 4.6e-138 494.6 253 97.2
FAN01G1241 Fragaria x ananassa HOM05D006780 ORTHO05D008455 5.1e-137 491.1 253 97.2
RcHm_v2.0_Chr1g0383391 Rosa chinensis HOM05D006780 ORTHO05D008455 4.4e-125 451.4 260 90.4
Prupe.2G322900 Prunus persica HOM05D006780 ORTHO05D008455 8.4e-100 367.5 257 76.7
MD07G1304300 Malus domestica HOM05D006780 ORTHO05D008455 2.4e-94 349.4 261 74.3
MD01G1232400 Malus domestica HOM05D006780 ORTHO05D008455 9.0e-94 347.4 257 73.5
QL09p026712 Quercus lobata HOM05D006780 ORTHO05D008455 9.0e-94 347.4 262 69.5
Nn6g33682 Nelumbo nucifera HOM05D006780 ORTHO05D008455 2.9e-92 342.4 253 69.2
Thecc.05G208000 Theobroma cacao HOM05D006780 ORTHO05D008455 8.5e-92 340.9 233 73.8
CANSAT21G1469 Cannabis sativa HOM05D006780 ORTHO05D008455 1.9e-91 339.7 229 73.8
Cfa013613 Carpinus fangiana HOM05D006780 ORTHO05D008455 1.9e-91 339.7 218 76.6
COL.COLO4_34143 Corchorus olitorius HOM05D006780 ORTHO05D008455 3.2e-91 339.0 218 77.1
Gorai.012G029700 Gossypium raimondii HOM05D006780 ORTHO05D008455 2.1e-90 336.3 218 76.1
Gohir.A05G389500 Gossypium hirsutum HOM05D006780 ORTHO05D008455 4.6e-90 335.1 218 75.7
Gohir.D04G027000 Gossypium hirsutum HOM05D006780 ORTHO05D008455 7.9e-90 334.3 218 75.7
SalBow2G3389 Salvia bowleyana HOM05D006780 ORTHO05D008455 3.0e-89 332.4 249 67.1
Eucgr.K00108 Eucalyptus grandis HOM05D006780 ORTHO05D008455 5.1e-89 331.6 247 66.4
Nitab4.5_0007683g0020 Nicotiana tabacum HOM05D006780 ORTHO05D008455 6.7e-89 331.3 234 68.8
CiPaw.08G043400 Carya illinoinensis HOM05D006780 ORTHO05D008455 1.1e-88 330.5 233 71.2
Lj3A891T47 Lonicera japonica HOM05D006780 ORTHO05D008455 4.3e-88 328.6 231 69.7
Nitab4.5_0000011g0110 Nicotiana tabacum HOM05D006780 ORTHO05D008455 5.7e-88 328.2 234 68.8
Migut.F00963 Erythranthe guttata HOM05D006780 ORTHO05D008455 7.4e-88 327.8 232 69.8
Atru.chr12.2100 Acer truncatum HOM05D006780 ORTHO05D008455 2.8e-87 325.9 218 73.9
Cc02_g00520 Coffea canephora HOM05D006780 ORTHO05D008455 3.7e-87 325.5 222 73.0
Hma1.2p1_0115F.1_g055870 Hydrangea macrophylla HOM05D006780 ORTHO05D008455 3.7e-87 325.5 217 72.4
Solyc07g005550.4 Solanum lycopersicum HOM05D006780 ORTHO05D008455 8.2e-87 324.3 239 67.4
Dinv29183 Davidia involucrata HOM05D006780 ORTHO05D008455 1.1e-86 323.9 257 65.8
CSS0033689 Camellia sinensis var. sinensis HOM05D006780 ORTHO05D008455 2.4e-86 322.8 220 69.5
Gorai.004G260300 Gossypium raimondii HOM05D006780 ORTHO05D008455 2.4e-86 322.8 218 72.5
Sopen07g001650 Solanum pennellii HOM05D006780 ORTHO05D008455 2.4e-86 322.8 223 70.0
Ciclev10012613m.g Citrus clementina HOM05D006780 ORTHO05D008455 5.3e-86 321.6 242 64.9
MSTRG.17 Avicennia marina HOM05D006780 ORTHO05D008455 6.9e-86 321.2 218 71.6
HanXRQChr08g0225871 Helianthus annuus HOM05D006780 ORTHO05D008455 9.1e-86 320.9 220 70.0
Lsat_1_v5_gn_8_3841 Lactuca sativa HOM05D006780 ORTHO05D008455 9.1e-86 320.9 222 70.7
TAR636G2448 Trochodendron aralioides HOM05D006780 ORTHO05D008455 9.1e-86 320.9 227 70.9
Gohir.1Z049572 Gossypium hirsutum HOM05D006780 ORTHO05D008455 1.2e-85 320.5 218 72.0
SGA_v2.0_scaffold165G38216 Striga asiatica HOM05D006780 ORTHO05D008455 1.5e-85 320.1 231 68.0
Sc07g0007970 Simmondsia chinensis HOM05D006780 ORTHO05D008455 3.4e-85 318.9 253 64.0
PGR142G1227 Punica granatum HOM05D006780 ORTHO05D008455 4.5e-85 318.5 235 67.7
Gohir.A08G223700 Gossypium hirsutum HOM05D006780 ORTHO05D008455 5.0e-84 315.1 218 71.1
Aqoxy3G02533 Aquilegia oxysepala HOM05D006780 ORTHO05D008455 2.5e-83 312.8 227 67.8
PSO063G3320 Papaver somniferum HOM05D006780 ORTHO05D008455 7.2e-83 311.2 220 68.6
TWI34G0276 Tripterygium wilfordii HOM05D006780 ORTHO05D008455 7.2e-83 311.2 218 72.5
unitig_52.g16857 Utricularia gibba HOM05D006780 ORTHO05D008455 7.2e-83 311.2 248 63.3
Manes.09G119100 Manihot esculenta HOM05D006780 ORTHO05D008455 9.4e-83 310.8 255 64.7
Hund14300 Selenicereus undatus HOM05D006780 ORTHO05D008455 1.2e-82 310.5 247 61.9
Actinidia34294 Actinidia chinensis HOM05D006780 ORTHO05D008455 2.1e-82 309.7 228 65.4
TAR629G2389 Trochodendron aralioides HOM05D006780 ORTHO05D008455 2.1e-82 309.7 226 66.8
PSO782G3414 Papaver somniferum HOM05D006780 ORTHO05D008455 3.6e-82 308.9 220 68.6
GSVIVG01024468001 Vitis vinifera HOM05D006780 ORTHO05D008455 3.6e-82 308.9 217 70.0
Actinidia08727 Actinidia chinensis HOM05D006780 ORTHO05D008455 4.6e-82 308.5 244 63.9
Sabra04G0017100 Salix brachista HOM05D006780 ORTHO05D008455 4.6e-82 308.5 229 69.0
arahy.Tifrunner.gnm1.ann1.T2A0GP Arachis hypogaea HOM05D006780 ORTHO05D008455 1.4e-81 307.0 256 62.5
arahy.Tifrunner.gnm1.ann1.T66758 Arachis hypogaea HOM05D006780 ORTHO05D008455 1.4e-81 307.0 256 62.5
THA.LOC104805709 Tarenaya hassleriana HOM05D006780 ORTHO05D008455 1.4e-81 307.0 220 69.5
CiPaw.07G182200 Carya illinoinensis HOM05D006780 ORTHO05D008455 1.8e-81 306.6 203 74.9
Potri.004G030100 Populus trichocarpa HOM05D006780 ORTHO05D008455 8.8e-81 304.3 230 67.8
AUR62030415 Chenopodium quinoa HOM05D006780 ORTHO05D008455 2.0e-80 303.1 257 57.6
CAN.G160.70 Capsicum annuum HOM05D006780 ORTHO05D008455 4.4e-80 302.0 227 64.3
TWI60G0503 Tripterygium wilfordii HOM05D006780 ORTHO05D008455 5.7e-80 301.6 257 62.3
ECA233G5194 Erigeron canadensis HOM05D006780 ORTHO05D008455 9.7e-80 300.8 204 73.0
ClCG01G004850 Citrullus lanatus HOM05D006780 ORTHO05D008455 1.3e-79 300.4 247 62.8
Sed0025589 Sechium edule HOM05D006780 ORTHO05D008455 4.8e-79 298.5 249 61.8
Aa31LG2G2290 Aethionema arabicum HOM05D006780 ORTHO05D008455 6.3e-79 298.1 224 66.1
Ah.12g058490 Amaranthus hybridus HOM05D006780 ORTHO05D008455 1.4e-78 297.0 257 58.0
VMungo1127G1066 Vigna mungo HOM05D006780 ORTHO05D008455 1.4e-78 297.0 197 70.6
AUR62010478 Chenopodium quinoa HOM05D006780 ORTHO05D008455 3.1e-78 295.8 257 56.8
Hma1.2p1_0115F.1_g055860 Hydrangea macrophylla HOM05D006780 ORTHO05D008455 9.1e-78 294.3 225 66.2
PGSC0003DMG400011181 Solanum tuberosum HOM05D006780 ORTHO05D008455 9.1e-78 294.3 318 50.3
Peaxi162Scf00542g00012 Petunia axillaris HOM05D006780 ORTHO05D008455 1.2e-77 293.9 249 59.8
AT2G44870 Arabidopsis thaliana HOM05D006780 ORTHO05D008455 3.4e-77 292.4 236 63.1
Thhalv10022468m.g Eutrema salsugineum HOM05D006780 ORTHO05D008455 2.9e-76 289.3 228 64.0
MELO3C005448.2 Cucumis melo HOM05D006780 ORTHO05D008455 3.8e-76 288.9 245 59.6
Lj3g0022672 Lotus japonicus HOM05D006780 ORTHO05D008455 8.5e-76 287.7 197 70.6
Phvul.011G002600 Phaseolus vulgaris HOM05D006780 ORTHO05D008455 1.1e-75 287.3 212 64.6
vmacro06481 Vaccinium macrocarpon HOM05D006780 ORTHO05D008455 1.1e-75 287.3 247 59.5
vmacro10178 Vaccinium macrocarpon HOM05D006780 ORTHO05D008455 1.4e-75 287.0 259 56.4
CsaV3_5G005070 Cucumis sativus L. HOM05D006780 ORTHO05D008455 3.2e-75 285.8 245 59.2
Rhsim03G0219000 Rhododendron simsii HOM05D006780 ORTHO05D008455 4.2e-75 285.4 259 56.0
AL2G19830 Arabidopsis lyrata HOM05D006780 ORTHO05D008455 1.2e-74 283.9 224 64.3
Sp5g19750 Schrenkiella parvula HOM05D006780 ORTHO05D008455 2.7e-74 282.7 227 63.0
BraA02t06361Z Brassica rapa HOM05D006780 ORTHO05D008455 4.7e-74 282.0 269 58.0
BcaC03g14678 Brassica carinata HOM05D006780 ORTHO05D008455 7.9e-74 281.2 227 63.0
BolC2t08258H Brassica oleracea HOM05D006780 ORTHO05D008455 7.9e-74 281.2 227 63.0
DCAR_008997 Daucus carota HOM05D006780 ORTHO05D008455 7.9e-74 281.2 240 56.7
A02p13050 Brassica napus HOM05D006780 ORTHO05D008455 1.0e-73 280.8 269 57.6
Medtr4g033475 Medicago truncatula HOM05D006780 ORTHO05D008455 1.0e-73 280.8 196 69.9
CDE02G2736 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 3.9e-73 278.9 254 55.5
Glyma.12G002200 Glycine max HOM05D006780 ORTHO05D008455 5.2e-73 278.5 195 68.2
Glyma.09G234600 Glycine max HOM05D006780 ORTHO05D008455 1.5e-72 276.9 195 67.7
Rhsim09G0211500 Rhododendron simsii HOM05D006780 ORTHO05D008455 1.5e-72 276.9 293 50.5
C02p21190 Brassica napus HOM05D006780 ORTHO05D008455 3.3e-72 275.8 269 56.5
BcaB05g24083 Brassica carinata HOM05D006780 ORTHO05D008455 1.3e-71 273.9 228 60.1
Carub.0002s1056 Capsella rubella HOM05D006780 ORTHO05D008455 8.2e-71 271.2 225 60.9
CDE11G0765 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 9.1e-70 267.7 220 58.2
Ca_19681_v3 Cicer arietinum L. HOM05D006780 ORTHO05D008455 9.1e-70 267.7 197 66.0
EL10Ac5g12581 Beta vulgaris HOM05D006780 ORTHO05D008455 1.6e-69 266.9 296 48.6
Dinv17273 Davidia involucrata HOM05D006780 ORTHO05D008455 1.6e-69 266.9 165 74.5
TPR.G31925 Trifolium pratense HOM05D006780 ORTHO05D008455 1.6e-69 266.9 196 66.3
Psat7g145160 Pisum sativum HOM05D006780 ORTHO05D008455 7.7e-69 264.6 196 65.8
CDE02G3388 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 1.7e-68 263.5 216 57.9
CARHR056600 Cardamine hirsuta HOM05D006780 ORTHO05D008455 3.6e-66 255.8 228 57.9
Duzib128G1164 Durio zibethinus HOM05D006780 ORTHO05D008455 2.6e-64 249.6 233 57.5
Zm00001eb024190 Zea mays HOM05D006780 ORTHO05D008455 3.3e-64 249.2 229 55.0
Duzib177G1050 Durio zibethinus HOM05D006780 ORTHO05D008455 4.1e-62 242.3 218 58.7
CDE11G0053 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 4.7e-58 228.8 216 51.4
ATR0829G223 Amborella trichopoda HOM05D006780 ORTHO05D008455 6.3e-55 218.4 195 55.9
HPP92_025668 Vanilla planifolia HOM05D006780 ORTHO05D008455 8.3e-55 218.0 217 53.5
Cpa.g.sc39.45 Carica papaya HOM05D006780 ORTHO05D008455 1.6e-42 177.2 120 70.8
SMO301G0031 Selaginella moellendorffii HOM05D006780 ORTHO05D008455 6.6e-36 155.2 187 41.2
Pp3c8_4270 Physcomitrium patens HOM05D006780 ORTHO05D008455 3.3e-35 152.9 209 34.4
Mapoly0133s0055 Marchantia polymorpha HOM05D006780 ORTHO05D008455 3.9e-28 129.4 150 40.7
CSS0031860 Camellia sinensis var. sinensis HOM05D001955 ORTHO05D001917 4.9e-23 112.5 73 71.2
CBR_g642 Chara braunii HOM05D006780 ORTHO05D008455 3.5e-21 106.3 195 33.8
Os10g0569000 Oryza sativa ssp. japonica HOM05D006780 ORTHO05D008455 8.9e-17 91.7 118 45.8


User provided reference genes

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