Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G2235 Fragaria x ananassa HOM05D006232 ORTHO05D007746 1.2e-143 513.8 260 100.0
FAN10G2312 Fragaria x ananassa HOM05D006232 ORTHO05D007746 7.8e-106 388.3 244 82.4
FvH4_7g18170 Fragaria vesca HOM05D006232 ORTHO05D007746 4.7e-95 352.4 178 97.8
FAN06G0943 Fragaria x ananassa HOM05D006232 ORTHO05D007746 6.2e-95 352.1 178 97.8
FAN06G1608 Fragaria x ananassa HOM05D006232 ORTHO05D007746 3.1e-94 349.7 178 97.2
FAN03G0759 Fragaria x ananassa HOM05D006232 ORTHO05D007746 8.9e-94 348.2 179 96.6
RcHm_v2.0_Chr1g0361811 Rosa chinensis HOM05D006232 ORTHO05D007746 1.4e-83 314.3 181 86.2
MD01G1095900 Malus domestica HOM05D006232 ORTHO05D007746 7.1e-83 312.0 251 65.3
MD01G1097600 Malus domestica HOM05D006232 ORTHO05D007746 9.5e-80 301.6 252 62.7
Oeu062029.1 Olea europaea HOM05D006232 ORTHO05D007746 4.4e-77 292.7 245 58.0
CAN.G691.16 Capsicum annuum HOM05D006232 ORTHO05D007746 2.9e-76 290.0 240 60.8
Migut.F01833 Erythranthe guttata HOM05D006232 ORTHO05D007746 9.2e-75 285.0 243 60.9
Peaxi162Scf00254g00041 Petunia axillaris HOM05D006232 ORTHO05D007746 6.0e-74 282.3 234 60.7
SalBow8G3454 Salvia bowleyana HOM05D006232 ORTHO05D007746 1.7e-73 280.8 244 59.0
Solyc11g008760.3 Solanum lycopersicum HOM05D006232 ORTHO05D007746 2.3e-73 280.4 236 59.3
Sopen11g004540 Solanum pennellii HOM05D006232 ORTHO05D007746 3.9e-73 279.6 235 59.1
PGSC0003DMG400016173 Solanum tuberosum HOM05D006232 ORTHO05D007746 3.9e-73 279.6 230 60.0
BcaB01g02134 Brassica carinata HOM05D006232 ORTHO05D007746 1.5e-72 277.7 251 56.6
Phvul.011G061000 Phaseolus vulgaris HOM05D006232 ORTHO05D007746 3.6e-71 273.1 214 65.0
Peaxi162Scf00890g00001 Petunia axillaris HOM05D006232 ORTHO05D007746 4.0e-70 269.6 235 61.3
FAN01G1185 Fragaria x ananassa HOM05D006232 ORTHO05D007746 4.4e-69 266.2 139 95.0
Cc09_g04270 Coffea canephora HOM05D006232 ORTHO05D007746 5.8e-69 265.8 230 58.7
C09p01210 Brassica napus HOM05D006232 ORTHO05D007746 1.3e-68 264.6 244 57.0
BolC9t53055H Brassica oleracea HOM05D006232 ORTHO05D007746 1.3e-68 264.6 244 57.0
Prupe.2G203600 Prunus persica HOM05D006232 ORTHO05D007746 1.9e-67 260.8 173 74.0
TAR371G1107 Trochodendron aralioides HOM05D006232 ORTHO05D007746 2.5e-64 250.4 198 58.6
GSVIVG01010456001 Vitis vinifera HOM05D006232 ORTHO05D007746 2.1e-63 247.3 196 61.7
BcaC04g24085 Brassica carinata HOM05D006232 ORTHO05D007746 4.8e-63 246.1 244 54.5
MSTRG.8185 Avicennia marina HOM05D006232 ORTHO05D007746 6.9e-62 242.3 210 56.7
Nitab4.5_0001677g0020 Nicotiana tabacum HOM05D006232 ORTHO05D007746 2.6e-61 240.4 207 58.9
arahy.Tifrunner.gnm1.ann1.NHK9RM Arachis hypogaea HOM05D006232 ORTHO05D007746 4.5e-61 239.6 219 55.7
Nitab4.5_0000743g0190 Nicotiana tabacum HOM05D006232 ORTHO05D007746 6.4e-60 235.7 206 56.8
QL08p048137 Quercus lobata HOM05D006232 ORTHO05D007746 2.4e-59 233.8 172 64.0
Atru.chr5.807 Acer truncatum HOM05D006232 ORTHO05D007746 2.1e-58 230.7 176 63.1
A09p01130 Brassica napus HOM05D006232 ORTHO05D007746 2.7e-58 230.3 244 52.5
BraA09t35784Z Brassica rapa HOM05D006232 ORTHO05D007746 2.7e-58 230.3 244 52.5
DCAR_015569 Daucus carota HOM05D006232 ORTHO05D007746 4.6e-58 229.6 184 57.6
SGA_v2.0_scaffold153G36899 Striga asiatica HOM05D006232 ORTHO05D007315 3.0e-57 226.9 209 58.4
Potri.002G183100 Populus trichocarpa HOM05D006232 ORTHO05D007746 1.1e-56 224.9 175 63.4
Potri.002G182900 Populus trichocarpa HOM05D006232 ORTHO05D007746 1.9e-56 224.2 171 64.9
TWI59G0137 Tripterygium wilfordii HOM05D006232 ORTHO05D007746 3.3e-56 223.4 182 58.2
Sabra02G0132400 Salix brachista HOM05D006232 ORTHO05D007746 9.6e-56 221.9 175 63.4
Thecc.01G330100 Theobroma cacao HOM05D006232 ORTHO05D007746 1.3e-55 221.5 165 65.5
Gohir.A07G133100 Gossypium hirsutum HOM05D006232 ORTHO05D007746 2.1e-55 220.7 172 62.8
CSS0005474 Camellia sinensis var. sinensis HOM05D006232 ORTHO05D007746 6.2e-55 219.2 170 62.9
CSS0021551 Camellia sinensis var. sinensis HOM05D006232 ORTHO05D007746 6.2e-55 219.2 170 62.9
Glyma.11G135300 Glycine max HOM05D006232 ORTHO05D007746 6.2e-55 219.2 173 63.0
Manes.07G094000 Manihot esculenta HOM05D006232 ORTHO05D007746 6.2e-55 219.2 172 63.4
VMungo1127G1689 Vigna mungo HOM05D006232 ORTHO05D007746 6.2e-55 219.2 174 63.8
Actinidia23019 Actinidia chinensis HOM05D006232 ORTHO05D007746 1.4e-54 218.0 172 62.2
Zm00001eb055010 Zea mays HOM05D006232 ORTHO05D007746 1.4e-54 218.0 235 47.2
Gohir.D07G137500 Gossypium hirsutum HOM05D006232 ORTHO05D007746 1.8e-54 217.6 172 61.0
Gorai.001G149600 Gossypium raimondii HOM05D006232 ORTHO05D007746 1.8e-54 217.6 172 61.0
Haze_15770 Corylus avellana HOM05D006232 ORTHO05D007746 5.3e-54 216.1 164 64.0
CiPaw.11G045400 Carya illinoinensis HOM05D006232 ORTHO05D007746 9.0e-54 215.3 158 65.8
CSS0030017 Camellia sinensis var. sinensis HOM05D006232 ORTHO05D007746 2.6e-53 213.8 170 61.2
Cpa.g.sc314.5 Carica papaya HOM05D006232 ORTHO05D007746 3.4e-53 213.4 180 54.4
COL.COLO4_23076 Corchorus olitorius HOM05D006232 ORTHO05D007746 3.4e-53 213.4 171 60.2
Lj1g0009831 Lotus japonicus HOM05D006232 ORTHO05D007746 7.6e-53 212.2 172 57.0
Duzib138G0398 Durio zibethinus HOM05D006232 ORTHO05D007746 2.9e-52 210.3 165 63.0
Rhsim06G0114200 Rhododendron simsii HOM05D006232 ORTHO05D007746 8.4e-52 208.8 172 58.7
Lalb_Chr15g0076621 Lupinus albus HOM05D006232 ORTHO05D007746 3.5e-50 203.4 161 62.1
AUR62025831 Chenopodium quinoa HOM05D006232 ORTHO05D007746 3.0e-49 200.3 172 56.4
arahy.Tifrunner.gnm1.ann1.YGP4KT Arachis hypogaea HOM05D006232 ORTHO05D007746 1.5e-48 198.0 172 58.7
Psat3g203240 Pisum sativum HOM05D006232 ORTHO05D007746 3.3e-48 196.8 175 56.0
vmacro04311 Vaccinium macrocarpon HOM05D006232 ORTHO05D007746 7.4e-48 195.7 170 58.2
Eucgr.A00015 Eucalyptus grandis HOM05D006232 ORTHO05D007746 1.6e-47 194.5 172 57.0
arahy.Tifrunner.gnm1.ann1.E4FCEH Arachis hypogaea HOM05D006232 ORTHO05D007746 2.8e-47 193.7 172 56.4
Ca_06909_v3 Cicer arietinum L. HOM05D006232 ORTHO05D007746 3.7e-47 193.4 173 56.1
arahy.Tifrunner.gnm1.ann1.MJ9C76 Arachis hypogaea HOM05D006232 ORTHO05D007746 4.8e-47 193.0 172 56.4
Aqoxy3G03779 Aquilegia oxysepala HOM05D006232 ORTHO05D007746 1.8e-46 191.0 162 56.8
HanXRQChr09g0270591 Helianthus annuus HOM05D006232 ORTHO05D007746 5.3e-46 189.5 196 51.5
Medtr7g016910 Medicago truncatula HOM05D006232 ORTHO05D007746 5.3e-46 189.5 175 53.1
Os03g0712900 Oryza sativa ssp. japonica HOM05D006232 ORTHO05D007746 6.9e-46 189.1 204 47.5
THA.LOC104801339 Tarenaya hassleriana HOM05D006232 ORTHO05D007746 1.2e-45 188.3 179 52.0
Nn2g14420 Nelumbo nucifera HOM05D006232 ORTHO05D007746 2.6e-45 187.2 169 50.9
PGR092G0006 Punica granatum HOM05D006232 ORTHO05D007746 2.6e-45 187.2 163 57.7
TPR.G23396 Trifolium pratense HOM05D006232 ORTHO05D007746 3.2e-43 180.3 162 56.8
Sed0020235 Sechium edule HOM05D006232 ORTHO05D007746 4.2e-43 179.9 171 56.1
Sc15g0005080 Simmondsia chinensis HOM05D006232 ORTHO05D007746 5.5e-43 179.5 171 55.0
EL10Ac1g00635 Beta vulgaris HOM05D006232 ORTHO05D007746 9.3e-43 178.7 169 52.7
Hund17178 Selenicereus undatus HOM05D006232 ORTHO05D007746 9.3e-43 178.7 210 47.1
ECA247G0464 Erigeron canadensis HOM05D006232 ORTHO05D007746 1.2e-42 178.3 181 50.3
Nn6g33415 Nelumbo nucifera HOM05D006232 ORTHO05D007746 3.5e-42 176.8 161 52.2
MBI12_g26899_MAGBIO Magnolia biondii HOM05D006232 ORTHO05D007746 6.1e-42 176.0 166 51.8
EL10Ac1g00638 Beta vulgaris HOM05D006232 ORTHO05D007746 3.9e-41 173.3 169 50.9
CsaV3_6G008430 Cucumis sativus L. HOM05D006232 ORTHO05D007746 6.7e-41 172.6 177 48.0
PSO782G2059 Papaver somniferum HOM05D006232 ORTHO05D007746 1.1e-40 171.8 177 49.2
HPP92_002273 Vanilla planifolia HOM05D006232 ORTHO05D007746 1.3e-39 168.3 180 52.2
Lj1P725T29 Lonicera japonica HOM05D006232 ORTHO05D007746 2.2e-39 167.5 194 46.9
ClCG06G002380 Citrullus lanatus HOM05D007869 ORTHO05D009962 3.7e-39 166.8 163 52.8
SHI19982 Sapria himalayana HOM05D006232 ORTHO05D007746 3.7e-39 166.8 182 47.3
AT4G01570 Arabidopsis thaliana HOM05D006232 ORTHO05D007746 2.4e-38 164.1 170 51.2
ATR0684G123 Amborella trichopoda HOM05D006232 ORTHO05D007746 6.9e-38 162.5 171 50.3
CDE09G0095 Ceratophyllum demersum HOM05D006232 ORTHO05D007746 6.9e-38 162.5 172 45.9
Thhalv10028437m.g Eutrema salsugineum HOM05D006232 ORTHO05D007746 1.2e-37 161.8 168 51.2
MELO3C022296.2 Cucumis melo HOM05D006232 ORTHO05D007746 2.6e-37 160.6 166 50.6
AL6G51770 Arabidopsis lyrata HOM05D006232 ORTHO05D007746 1.0e-36 158.7 168 50.6
Lsat_1_v5_gn_4_109581 Lactuca sativa HOM05D006232 ORTHO05D007746 1.1e-35 155.2 169 47.3
CARHR250090 Cardamine hirsuta HOM05D006232 ORTHO05D007746 3.2e-35 153.7 172 49.4
Sp6g01480 Schrenkiella parvula HOM05D006232 ORTHO05D007746 5.5e-35 152.9 166 51.2
Aa31LG5G1290 Aethionema arabicum HOM05D006232 ORTHO05D007746 7.2e-35 152.5 165 51.5
Carub.0006s3563 Capsella rubella HOM05D006232 ORTHO05D007746 2.7e-34 150.6 166 49.4
CSS0047958 Camellia sinensis var. sinensis HOM05D006232 ORTHO05D007746 1.0e-33 148.7 170 46.5
SGA_v2.0_scaffold83G26364 Striga asiatica HOM05D003442 ORTHO05D004005 3.7e-31 140.2 143 53.1
SGA_v2.0_scaffold83G26365 Striga asiatica HOM05D006232 ORTHO05D007746 2.2e-28 131.0 113 59.3
MD01G1096300 Malus domestica HOM05D006232 ORTHO05D007746 7.9e-26 122.5 77 77.9
Dinv01553 Davidia involucrata HOM05D006232 ORTHO05D007746 1.2e-21 108.6 77 67.5
CAN.G395.52 Capsicum annuum HOM05D006232 ORTHO05D007746 9.4e-19 99.0 165 36.4
MD01G1096200 Malus domestica HOM05D006232 ORTHO05D007746 9.4e-19 99.0 77 59.7
Hma1.2p1_0074F.1_g038910 Hydrangea macrophylla HOM05D006232 ORTHO05D007746 1.8e-17 94.7 72 54.2
SEGI_19483 Sequoiadendron giganteum HOM05D006232 ORTHO05D007746 3.8e-12 77.0 301 23.6
Lj1P725T28 Lonicera japonica HOM05D006232 ORTHO05D007746 1.5e-11 75.1 46 71.7
MD01G1131700 Malus domestica HOM05D006232 ORTHO05D007746 1.5e-11 75.1 46 78.3
CAN.G395.53 Capsicum annuum HOM05D006232 ORTHO05D007746 2.1e-10 71.2 39 84.6


User provided reference genes

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