Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G1950 Fragaria x ananassa HOM05D005178 ORTHO05D006123 1.9e-150 535.8 267 100.0
FAN06G4203 Fragaria x ananassa HOM05D005178 ORTHO05D006123 5.3e-137 491.1 264 93.9
FAN10G2759 Fragaria x ananassa HOM05D005178 ORTHO05D006123 9.4e-134 480.3 248 98.0
FAN06G0749 Fragaria x ananassa HOM05D005178 ORTHO05D006123 3.1e-129 465.3 248 94.8
FvH4_7g15840 Fragaria vesca HOM05D005178 ORTHO05D006123 5.4e-129 464.5 248 94.8
FAN03G0560 Fragaria x ananassa HOM05D005178 ORTHO05D006123 7.7e-128 460.7 248 94.0
RcHm_v2.0_Chr1g0358651 Rosa chinensis HOM05D005178 ORTHO05D006123 1.7e-106 389.8 248 79.0
MD07G1144100 Malus domestica HOM05D005178 ORTHO05D006123 2.5e-57 226.5 249 51.8
Prupe.2G183000 Prunus persica HOM05D005178 ORTHO05D006123 1.5e-51 207.2 249 49.8
MD01G1075000 Malus domestica HOM05D005178 ORTHO05D006123 8.7e-47 191.4 249 47.0
CANSAT56G4005 Cannabis sativa HOM05D005178 ORTHO05D006123 6.9e-44 181.8 250 42.8
Gohir.D12G113800 Gossypium hirsutum HOM05D005178 ORTHO05D006123 1.0e-42 177.9 247 41.7
Nn7g37376 Nelumbo nucifera HOM05D005178 ORTHO05D006123 1.4e-41 174.1 244 41.8
Gorai.008G123300 Gossypium raimondii HOM05D005178 ORTHO05D006123 3.2e-41 172.9 247 41.3
Haze_15614 Corylus avellana HOM05D005178 ORTHO05D006123 1.1e-38 164.5 245 42.0
Nn1g01788 Nelumbo nucifera HOM05D005178 ORTHO05D006123 3.3e-38 162.9 237 38.4
QL04p059571 Quercus lobata HOM05D005178 ORTHO05D006123 4.3e-38 162.5 253 39.9
PGR042G2135 Punica granatum HOM05D005178 ORTHO05D006123 8.2e-37 158.3 253 39.1
CiPaw.01G071600 Carya illinoinensis HOM05D005178 ORTHO05D006123 1.4e-36 157.5 250 42.0
Manes.05G026400 Manihot esculenta HOM05D005178 ORTHO05D006123 1.4e-36 157.5 236 40.3
Gorai.004G153000 Gossypium raimondii HOM05D005178 ORTHO05D006123 3.1e-36 156.4 244 38.9
Gohir.D08G147400 Gossypium hirsutum HOM05D005178 ORTHO05D006123 9.1e-36 154.8 244 38.5
Gohir.A08G126100 Gossypium hirsutum HOM05D005178 ORTHO05D006123 1.5e-35 154.1 238 38.7
Gorai.007G105400 Gossypium raimondii HOM05D005178 ORTHO05D006123 1.0e-34 151.4 248 39.5
Duzib133G0451 Durio zibethinus HOM05D005178 ORTHO05D006123 1.7e-34 150.6 249 40.6
Thecc.01G348100 Theobroma cacao HOM05D005178 ORTHO05D006123 2.2e-34 150.2 247 40.1
Gohir.D11G099200 Gossypium hirsutum HOM05D005178 ORTHO05D006123 2.9e-34 149.8 248 39.5
Sabra02G0144400 Salix brachista HOM05D005178 ORTHO05D006123 3.8e-34 149.4 243 36.2
Potri.002G167300 Populus trichocarpa HOM05D005178 ORTHO05D006123 6.5e-34 148.7 243 36.6
Gohir.A11G094200 Gossypium hirsutum HOM05D005178 ORTHO05D006123 1.1e-33 147.9 248 39.5
HPP92_005223 Vanilla planifolia HOM05D005178 ORTHO05D006123 2.5e-33 146.7 252 34.1
Sc01g0002990 Simmondsia chinensis HOM05D005178 ORTHO05D006123 2.1e-32 143.7 243 39.5
Hma1.2p1_2972F.1_g331100 Hydrangea macrophylla HOM05D005178 ORTHO05D006123 3.6e-32 142.9 254 37.4
Potri.014G094400 Populus trichocarpa HOM05D005178 ORTHO05D006123 3.6e-32 142.9 239 38.1
Duzib138G0021 Durio zibethinus HOM05D005178 ORTHO05D006123 7.9e-32 141.7 249 38.6
MBI06_g02230_MAGBIO Magnolia biondii HOM05D005178 ORTHO05D006123 1.8e-31 140.6 241 36.5
Hma1.2p1_0384F.1_g141000 Hydrangea macrophylla HOM05D005178 ORTHO05D006123 2.3e-31 140.2 253 38.7
AL4G45600 Arabidopsis lyrata HOM05D005178 ORTHO05D006123 3.9e-31 139.4 247 34.4
CsaV3_3G008390 Cucumis sativus L. HOM05D000050 ORTHO05D000380 8.8e-31 138.3 245 35.9
C03p30470 Brassica napus HOM05D005178 ORTHO05D006123 1.1e-30 137.9 249 35.7
BolC3t15395H Brassica oleracea HOM05D005178 ORTHO05D006123 1.1e-30 137.9 249 35.7
ClCG08G003840 Citrullus lanatus HOM05D005178 ORTHO05D006123 1.1e-30 137.9 261 35.6
BcaC01g05079 Brassica carinata HOM05D005178 ORTHO05D006123 2.0e-30 137.1 252 38.1
Dinv43890 Davidia involucrata HOM05D005178 ORTHO05D006123 3.3e-30 136.3 253 36.8
A05p01500 Brassica napus HOM05D005178 ORTHO05D006123 4.4e-30 136.0 255 36.5
BraA05t19146Z Brassica rapa HOM05D005178 ORTHO05D006123 4.4e-30 136.0 255 36.5
Dinv32550 Davidia involucrata HOM05D005178 ORTHO05D006123 4.4e-30 136.0 241 37.3
Aa31LG1G27670 Aethionema arabicum HOM05D005178 ORTHO05D006123 7.4e-30 135.2 240 33.3
Aa31LG5G850 Aethionema arabicum HOM05D005178 ORTHO05D006123 9.7e-30 134.8 250 35.6
C03p38880 Brassica napus HOM05D005178 ORTHO05D006123 9.7e-30 134.8 247 40.1
MELO3C006056.2 Cucumis melo HOM05D005178 ORTHO05D006123 9.7e-30 134.8 245 35.9
AL1G10980 Arabidopsis lyrata HOM05D005178 ORTHO05D006123 4.8e-29 132.5 251 36.3
BcaC02g12521 Brassica carinata HOM05D005178 ORTHO05D006123 4.8e-29 132.5 254 36.2
C04p01700 Brassica napus HOM05D005178 ORTHO05D006123 4.8e-29 132.5 254 36.2
BolC4t21822H Brassica oleracea HOM05D005178 ORTHO05D006123 4.8e-29 132.5 254 36.2
AT2G46300 Arabidopsis thaliana HOM05D005178 ORTHO05D006123 1.4e-28 131.0 247 33.6
CiPaw.02G038200 Carya illinoinensis HOM05D005178 ORTHO05D006123 1.8e-28 130.6 245 36.3
C05p00550 Brassica napus HOM05D005178 ORTHO05D006123 2.4e-28 130.2 256 37.1
PSO135G0875 Papaver somniferum HOM05D005178 ORTHO05D006123 2.4e-28 130.2 248 34.7
A10p00520 Brassica napus HOM05D005178 ORTHO05D006123 3.1e-28 129.8 256 37.9
BcaB03g13583 Brassica carinata HOM05D005178 ORTHO05D006123 7.0e-28 128.6 256 37.5
Lj1g0025938 Lotus japonicus HOM05D005178 ORTHO05D006123 7.0e-28 128.6 245 34.3
PSO384G3117 Papaver somniferum HOM05D005178 ORTHO05D006123 7.0e-28 128.6 248 34.7
BolC5t28844H Brassica oleracea HOM05D005178 ORTHO05D006123 9.1e-28 128.3 256 37.5
Thhalv10001596m.g Eutrema salsugineum HOM05D005178 ORTHO05D006123 9.1e-28 128.3 251 32.7
FAN01G2778 Fragaria x ananassa HOM05D005178 ORTHO05D006123 2.0e-27 127.1 59 96.6
CARHR000970 Cardamine hirsuta HOM05D005178 ORTHO05D006123 2.6e-27 126.7 251 35.1
BolC3t16162H Brassica oleracea HOM05D005178 ORTHO05D006123 3.5e-27 126.3 253 37.5
Lj7A504T56 Lonicera japonica HOM05D005178 ORTHO05D006123 4.5e-27 125.9 235 37.4
Phvul.006G110000 Phaseolus vulgaris HOM05D005178 ORTHO05D006123 4.5e-27 125.9 259 34.7
Sopen10g005540 Solanum pennellii HOM05D005178 ORTHO05D006123 5.9e-27 125.6 244 35.2
Ciclev10021837m.g Citrus clementina HOM05D005178 ORTHO05D006123 7.7e-27 125.2 242 37.6
Sed0006216 Sechium edule HOM05D005178 ORTHO05D006123 7.7e-27 125.2 233 32.2
BraA10t42331Z Brassica rapa HOM05D005178 ORTHO05D006123 1.0e-26 124.8 256 36.7
SGA_v2.0_scaffold11G05717 Striga asiatica HOM05D005178 ORTHO05D006123 1.0e-26 124.8 246 35.4
Atru.chr5.616 Acer truncatum HOM05D005178 ORTHO05D006123 1.3e-26 124.4 248 34.7
A03p31890 Brassica napus HOM05D005178 ORTHO05D006123 1.7e-26 124.0 259 36.7
Sed0019896 Sechium edule HOM05D005178 ORTHO05D006123 1.7e-26 124.0 258 35.7
Solyc10g011750.3 Solanum lycopersicum HOM05D005178 ORTHO05D006123 2.2e-26 123.6 244 35.2
Medtr7g116930 Medicago truncatula HOM05D005178 ORTHO05D006123 2.9e-26 123.2 252 35.7
Rhsim07G0007300 Rhododendron simsii HOM05D005178 ORTHO05D006123 2.9e-26 123.2 238 37.4
CARHR249180 Cardamine hirsuta HOM05D005178 ORTHO05D006123 5.0e-26 122.5 257 35.8
Carub.0006s3617 Capsella rubella HOM05D005178 ORTHO05D006123 6.5e-26 122.1 262 36.6
BcaB01g02336 Brassica carinata HOM05D005178 ORTHO05D006123 8.5e-26 121.7 253 36.4
BcaC01g06846 Brassica carinata HOM05D005178 ORTHO05D006123 8.5e-26 121.7 247 38.1
Ca_09491_v3 Cicer arietinum L. HOM05D005178 ORTHO05D006123 1.1e-25 121.3 252 35.3
AL6G52250 Arabidopsis lyrata HOM05D005178 ORTHO05D006123 1.5e-25 120.9 257 36.2
THA.LOC104825868 Tarenaya hassleriana HOM05D005178 ORTHO05D006123 2.5e-25 120.2 257 35.4
VMungo0540G0638 Vigna mungo HOM05D005178 ORTHO05D006123 2.5e-25 120.2 265 33.2
Carub.0001s0080 Capsella rubella HOM05D005178 ORTHO05D006123 3.2e-25 119.8 253 36.8
Sed0008780 Sechium edule HOM05D005178 ORTHO05D006123 3.2e-25 119.8 242 33.9
Thhalv10028895m.g Eutrema salsugineum HOM05D005178 ORTHO05D006123 4.2e-25 119.4 256 35.9
C02p38280 Brassica napus HOM05D005178 ORTHO05D006123 5.5e-25 119.0 252 37.7
BolC2t09843H Brassica oleracea HOM05D005178 ORTHO05D006123 5.5e-25 119.0 251 37.8
CsaV3_6G003970 Cucumis sativus L. HOM05D005178 ORTHO05D006123 5.5e-25 119.0 255 34.1
BcaB01g03231 Brassica carinata HOM05D005178 ORTHO05D006123 9.4e-25 118.2 249 34.1
BcaC01g05085 Brassica carinata HOM05D005178 ORTHO05D006123 9.4e-25 118.2 249 34.1
BcaC03g16062 Brassica carinata HOM05D005178 ORTHO05D006123 9.4e-25 118.2 251 37.5
BraA02t07418Z Brassica rapa HOM05D005178 ORTHO05D006123 9.4e-25 118.2 252 37.7
PGSC0003DMG400019400 Solanum tuberosum HOM05D005178 ORTHO05D006123 1.6e-24 117.5 244 35.2
AT1G01453 Arabidopsis thaliana HOM05D005178 ORTHO05D006123 2.1e-24 117.1 251 34.3
MELO3C029922.2 Cucumis melo HOM05D005178 ORTHO05D006123 3.6e-24 116.3 246 32.9
AT4G01110 Arabidopsis thaliana HOM05D005178 ORTHO05D006123 6.1e-24 115.5 259 35.9
Sp6g01000 Schrenkiella parvula HOM05D005178 ORTHO05D006123 6.1e-24 115.5 257 36.6
Aqoxy7G00174 Aquilegia oxysepala HOM05D005178 ORTHO05D006123 1.0e-23 114.8 249 33.3
Thhalv10009686m.g Eutrema salsugineum HOM05D005178 ORTHO05D006123 1.0e-23 114.8 254 36.2
BraA03t12361Z Brassica rapa HOM05D005178 ORTHO05D006123 1.4e-23 114.4 259 34.7
HPP92_026775 Vanilla planifolia HOM05D005178 ORTHO05D006123 1.8e-23 114.0 241 33.2
Aa31LG1G10830 Aethionema arabicum HOM05D005178 ORTHO05D006123 2.3e-23 113.6 246 34.1
THA.LOC104802056 Tarenaya hassleriana HOM05D005178 ORTHO05D006123 4.0e-23 112.8 246 34.1
A03p25540 Brassica napus HOM05D005178 ORTHO05D006123 5.2e-23 112.5 249 33.7
BraA03t11771Z Brassica rapa HOM05D005178 ORTHO05D006123 5.2e-23 112.5 249 33.7
Sp1g00860 Schrenkiella parvula HOM05D005178 ORTHO05D006123 1.5e-22 110.9 248 35.9
Carub.0004s2900 Capsella rubella HOM05D005178 ORTHO05D006123 4.4e-22 109.4 246 30.1
Gohir.A12G110633 Gossypium hirsutum HOM05D005178 ORTHO05D006123 2.2e-21 107.1 146 42.5
CARHR141580 Cardamine hirsuta HOM05D005178 ORTHO05D006123 2.8e-21 106.7 248 30.2
CAN.G1651.2 Capsicum annuum HOM05D005178 ORTHO05D006123 3.7e-21 106.3 242 31.8
SHI13195 Sapria himalayana HOM05D005178 ORTHO05D006123 8.2e-21 105.1 247 27.1
Nitab4.5_0005619g0010 Nicotiana tabacum HOM05D005178 ORTHO05D006123 1.1e-20 104.8 242 33.5
Lalb_Chr04g0261721 Lupinus albus HOM05D005178 ORTHO05D006123 1.8e-20 104.0 178 34.3
Peaxi162Scf00403g00074 Petunia axillaris HOM05D005178 ORTHO05D006123 2.4e-20 103.6 232 32.3
Glyma.03G255300 Glycine max HOM05D005178 ORTHO05D006123 4.1e-20 102.8 243 31.7
Sp4g28340 Schrenkiella parvula HOM05D005178 ORTHO05D006123 4.1e-20 102.8 251 31.1
TWI14G0215 Tripterygium wilfordii HOM05D005178 ORTHO05D006123 4.1e-20 102.8 243 30.5
Glyma.19G252900 Glycine max HOM05D005178 ORTHO05D006123 7.0e-20 102.1 243 32.1
THA.LOC104817334 Tarenaya hassleriana HOM05D005178 ORTHO05D006123 2.0e-19 100.5 243 31.3
Actinidia10100 Actinidia chinensis HOM05D005178 ORTHO05D006123 1.7e-18 97.4 255 32.9
Oeu008679.1 Olea europaea HOM05D005178 ORTHO05D006123 1.7e-18 97.4 162 32.1
A02p24280 Brassica napus HOM05D005178 ORTHO05D006123 1.1e-17 94.7 174 35.6
CSS0038689 Camellia sinensis var. sinensis HOM05D005178 ORTHO05D006123 1.5e-17 94.4 242 33.1
Nitab4.5_0003779g0030 Nicotiana tabacum HOM05D005178 ORTHO05D006123 2.5e-17 93.6 234 29.9
TPR.G4707 Trifolium pratense HOM05D005178 ORTHO05D006123 3.2e-17 93.2 242 31.0
Sabra14G0069000 Salix brachista HOM05D005178 ORTHO05D006123 9.4e-17 91.7 161 32.3
Peaxi162Scf00099g00191 Petunia axillaris HOM05D005178 ORTHO05D006123 3.6e-16 89.7 237 31.6
Nitab4.5_0002262g0140 Nicotiana tabacum HOM05D005178 ORTHO05D006123 6.1e-16 89.0 235 32.3
Nitab4.5_0000522g0010 Nicotiana tabacum HOM05D005178 ORTHO05D006123 4.0e-15 86.3 218 31.7
vmacro13200 Vaccinium macrocarpon HOM05D005178 ORTHO05D006123 4.4e-14 82.8 206 37.9
TAR375G0073 Trochodendron aralioides HOM05D005178 ORTHO05D006123 4.8e-13 79.3 107 38.3
SalBow5G4166 Salvia bowleyana HOM05D005178 ORTHO05D006123 3.1e-12 76.6 259 26.6
ATR1127G036 Amborella trichopoda HOM05D005178 ORTHO05D006123 2.2e-10 70.5 243 25.9
AUR62023503 Chenopodium quinoa HOM05D005178 ORTHO05D006123 5.0e-10 69.3 98 33.7
BcaC01g05083 Brassica carinata HOM05D005178 ORTHO05D006123 6.5e-10 68.9 98 34.7
AUR62004447 Chenopodium quinoa HOM05D005178 ORTHO05D006123 5.5e-09 65.9 98 31.6
SEGI_25000 Sequoiadendron giganteum HOM05D000973 ORTHO05D000652 5.5e-09 65.9 250 28.0
SEGI_09853 Sequoiadendron giganteum HOM05D000973 ORTHO05D000652 1.2e-08 64.7 225 27.6
Psat3g003480 Pisum sativum HOM05D005178 ORTHO05D006123 2.7e-08 63.5 132 28.0
GSVIVG01016858001 Vitis vinifera HOM05D002137 ORTHO05D002144 4.7e-08 62.8 215 26.0
Pp3c23_12930 Physcomitrium patens HOM05D000973 ORTHO05D003779 8.0e-08 62.0 221 24.4
SEGI_30112 Sequoiadendron giganteum HOM05D000973 ORTHO05D000652 1.8e-07 60.8 244 27.0
Dinv30376 Davidia involucrata HOM05D002137 ORTHO05D002144 4.0e-07 59.7 211 24.6
MBI19_g28097_MAGBIO Magnolia biondii HOM05D000973 ORTHO05D000652 4.0e-07 59.7 231 31.2
CDE08G0759 Ceratophyllum demersum HOM05D002649 ORTHO05D002838 6.8e-07 58.9 172 30.8
Dinv10735 Davidia involucrata HOM05D000973 ORTHO05D000652 8.8e-07 58.5 200 33.0
Lalb_Chr04g0249711 Lupinus albus HOM05D000973 ORTHO05D000652 8.8e-07 58.5 207 29.5
CiPaw.02G139800 Carya illinoinensis HOM05D002137 ORTHO05D002144 2.0e-06 57.4 213 24.9
TAR636G1424 Trochodendron aralioides HOM05D000973 ORTHO05D000652 2.0e-06 57.4 237 28.3
unitig_26.g8929 Utricularia gibba HOM05D002137 ORTHO05D002144 7.5e-06 55.5 257 24.9


User provided reference genes

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