Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G1904 Fragaria x ananassa HOM05D005916 ORTHO05D007168 1.6e-115 419.5 211 100.0
FAN01G2833 Fragaria x ananassa HOM05D005916 ORTHO05D007168 1.4e-103 379.8 213 93.0
FAN06G3885 Fragaria x ananassa HOM05D005916 ORTHO05D007168 1.2e-102 376.7 205 94.1
FvH4_7g26530 Fragaria vesca HOM05D005916 ORTHO05D007168 1.9e-100 369.4 211 91.0
RcHm_v2.0_Chr1g0373201 Rosa chinensis HOM05D005916 ORTHO05D007168 3.9e-98 361.7 206 90.3
MD01G1174300 Malus domestica HOM05D005916 ORTHO05D007168 8.6e-82 307.4 211 77.7
Prupe.2G269700 Prunus persica HOM05D005916 ORTHO05D007168 1.1e-79 300.4 211 76.8
CANSAT56G4429 Cannabis sativa HOM05D005916 ORTHO05D007168 6.4e-77 291.2 206 73.8
QL09p027336 Quercus lobata HOM05D005916 ORTHO05D007168 4.2e-76 288.5 202 75.2
Gorai.001G052400 Gossypium raimondii HOM05D005916 ORTHO05D007168 9.3e-76 287.3 211 73.0
Psat6g202080 Pisum sativum HOM05D005916 ORTHO05D007168 1.2e-75 287.0 205 73.2
Cpa.g.sc13.218 Carica papaya HOM05D005916 ORTHO05D007168 2.1e-75 286.2 210 73.3
Gohir.D07G049300 Gossypium hirsutum HOM05D005916 ORTHO05D007168 3.5e-75 285.4 211 72.5
Potri.012G113400 Populus trichocarpa HOM05D005916 ORTHO05D007168 3.5e-75 285.4 207 73.4
Eucgr.A02936 Eucalyptus grandis HOM05D005916 ORTHO05D007168 2.3e-74 282.7 186 76.9
Phvul.007G063000 Phaseolus vulgaris HOM05D005916 ORTHO05D007168 3.0e-74 282.3 210 72.9
Glyma.10G242500 Glycine max HOM05D005916 ORTHO05D007168 1.5e-73 280.0 208 73.1
Thecc.03G145100 Theobroma cacao HOM05D005916 ORTHO05D007168 1.5e-73 280.0 211 72.0
COL.COLO4_37304 Corchorus olitorius HOM05D005916 ORTHO05D007168 2.5e-73 279.3 210 71.0
Lj5g0003841 Lotus japonicus HOM05D005916 ORTHO05D007168 5.6e-73 278.1 209 70.3
Atru.chr6.1973 Acer truncatum HOM05D005916 ORTHO05D007168 9.6e-73 277.3 207 71.0
Haze_22228 Corylus avellana HOM05D005916 ORTHO05D007168 9.6e-73 277.3 211 70.1
MD07G1241000 Malus domestica HOM05D005916 ORTHO05D007168 9.6e-73 277.3 211 71.6
Manes.06G129600 Manihot esculenta HOM05D005916 ORTHO05D007168 1.6e-72 276.6 201 73.6
Ciclev10032791m.g Citrus clementina HOM05D005916 ORTHO05D007168 2.8e-72 275.8 206 71.4
SGA_v2.0_scaffold136G34977 Striga asiatica HOM05D005916 ORTHO05D007168 2.8e-72 275.8 206 69.9
VMungo0720G1184 Vigna mungo HOM05D005916 ORTHO05D007168 4.8e-72 275.0 210 71.4
FvH4_5g39330 Fragaria vesca HOM05D005916 ORTHO05D007168 6.2e-72 274.6 152 89.5
FAN08G1750 Fragaria x ananassa HOM05D005916 ORTHO05D007168 6.2e-72 274.6 152 89.5
Ca_10837_v3 Cicer arietinum L. HOM05D005916 ORTHO05D007168 1.1e-71 273.9 208 72.1
arahy.Tifrunner.gnm1.ann1.VH0MPJ Arachis hypogaea HOM05D005916 ORTHO05D007168 1.8e-71 273.1 211 70.6
FAN18G1579 Fragaria x ananassa HOM05D005916 ORTHO05D007168 6.9e-71 271.2 152 88.8
Oeu046440.1 Olea europaea HOM05D005916 ORTHO05D007168 9.0e-71 270.8 186 73.7
TPR.G26100 Trifolium pratense HOM05D005916 ORTHO05D007168 9.0e-71 270.8 205 69.8
Sabra15G0132700 Salix brachista HOM05D005916 ORTHO05D007168 1.2e-70 270.4 207 70.0
Aqoxy3G02650 Aquilegia oxysepala HOM05D005916 ORTHO05D007168 1.5e-70 270.0 185 74.6
DCAR_014647 Daucus carota HOM05D005916 ORTHO05D007168 2.0e-70 269.6 190 75.8
CSS0012195 Camellia sinensis var. sinensis HOM05D005916 ORTHO05D007168 2.6e-70 269.2 206 69.9
Dinv34531 Davidia involucrata HOM05D005916 ORTHO05D007168 2.6e-70 269.2 207 70.5
EL10Ac5g12406 Beta vulgaris HOM05D005916 ORTHO05D007168 3.4e-70 268.9 206 68.0
PSO782G0331 Papaver somniferum HOM05D005916 ORTHO05D007168 7.6e-70 267.7 202 68.8
SGA_v2.0_scaffold69G23310 Striga asiatica HOM05D005916 ORTHO05D007168 1.3e-69 266.9 185 74.6
Ah.01g021910 Amaranthus hybridus HOM05D005916 ORTHO05D007168 1.7e-69 266.5 208 66.8
Carub.0006s1828 Capsella rubella HOM05D005916 ORTHO05D007168 3.8e-69 265.4 202 71.3
PSO063G1306 Papaver somniferum HOM05D005916 ORTHO05D007168 4.9e-69 265.0 202 68.3
CsaV3_4G004400 Cucumis sativus L. HOM05D005916 ORTHO05D007168 1.9e-68 263.1 183 73.2
Cc00_g13060 Coffea canephora HOM05D005916 ORTHO05D007168 2.4e-68 262.7 186 73.7
Sp6g24470 Schrenkiella parvula HOM05D005916 ORTHO05D007168 2.4e-68 262.7 206 67.5
AL6G31440 Arabidopsis lyrata HOM05D005916 ORTHO05D007168 4.2e-68 261.9 202 70.3
MSTRG.8396 Avicennia marina HOM05D005916 ORTHO05D007168 1.2e-67 260.4 183 73.2
Migut.F01212 Erythranthe guttata HOM05D005916 ORTHO05D007168 2.1e-67 259.6 187 71.7
Thhalv10014735m.g Eutrema salsugineum HOM05D005916 ORTHO05D007168 2.1e-67 259.6 203 69.0
FAN25G1847 Fragaria x ananassa HOM05D005916 ORTHO05D007168 2.7e-67 259.2 154 85.7
Potri.015G110900 Populus trichocarpa HOM05D005916 ORTHO05D007168 2.7e-67 259.2 207 68.1
Gohir.A07G044800 Gossypium hirsutum HOM05D005916 ORTHO05D007168 7.9e-67 257.7 207 67.6
GSVIVG01024482001 Vitis vinifera HOM05D005916 ORTHO05D007168 2.3e-66 256.1 206 67.5
Glyma.20G151600 Glycine max HOM05D005916 ORTHO05D007168 3.0e-66 255.8 210 68.1
arahy.Tifrunner.gnm1.ann1.7NV6YZ Arachis hypogaea HOM05D005916 ORTHO05D007168 3.9e-66 255.4 208 67.8
vmacro09932 Vaccinium macrocarpon HOM05D005916 ORTHO05D007168 3.9e-66 255.4 213 65.3
ECA233G3320 Erigeron canadensis HOM05D005916 ORTHO05D007168 5.1e-66 255.0 207 68.6
Sc17g0004780 Simmondsia chinensis HOM05D005916 ORTHO05D007168 5.1e-66 255.0 194 67.5
PSO675G3127 Papaver somniferum HOM05D005916 ORTHO05D007168 1.9e-65 253.1 184 70.7
PSO541G5205 Papaver somniferum HOM05D005916 ORTHO05D007168 3.3e-65 252.3 202 66.3
BcaB08g36557 Brassica carinata HOM05D005916 ORTHO05D007168 5.6e-65 251.5 210 66.7
Medtr1g102540 Medicago truncatula HOM05D005916 ORTHO05D007168 2.1e-64 249.6 206 67.5
CARHR192950 Cardamine hirsuta HOM05D005916 ORTHO05D007168 3.6e-64 248.8 202 68.3
Sopen03g024920 Solanum pennellii HOM05D005916 ORTHO05D007168 6.2e-64 248.1 186 70.4
THA.LOC104799659 Tarenaya hassleriana HOM05D005916 ORTHO05D007168 6.2e-64 248.1 214 65.4
PGSC0003DMG403008332 Solanum tuberosum HOM05D005916 ORTHO05D007168 8.1e-64 247.7 186 70.4
Nitab4.5_0000103g0220 Nicotiana tabacum HOM05D005916 ORTHO05D007168 1.8e-63 246.5 185 70.8
Solyc03g094030.4 Solanum lycopersicum HOM05D005916 ORTHO05D007168 2.4e-63 246.1 184 70.7
PGR083G1688 Punica granatum HOM05D005916 ORTHO05D007168 4.0e-63 245.4 208 64.4
MELO3C017626.2 Cucumis melo HOM05D005916 ORTHO05D007168 5.3e-63 245.0 183 69.9
Aa31LG2G19640 Aethionema arabicum HOM05D005916 ORTHO05D007168 9.0e-63 244.2 188 71.8
HPP92_020684 Vanilla planifolia HOM05D005916 ORTHO05D007168 2.0e-62 243.0 183 70.5
AT5G19910 Arabidopsis thaliana HOM05D005916 ORTHO05D007168 3.4e-62 242.3 210 66.7
EL10Ac9g22675 Beta vulgaris HOM05D005916 ORTHO05D007168 4.5e-62 241.9 203 64.0
A02p05910 Brassica napus HOM05D005916 ORTHO05D007168 7.6e-62 241.1 210 62.9
BraA02t05543Z Brassica rapa HOM05D005916 ORTHO05D007168 7.6e-62 241.1 210 62.9
MBI04_g13855_MAGBIO Magnolia biondii HOM05D005916 ORTHO05D007168 7.6e-62 241.1 187 69.0
Zm00001eb038950 Zea mays HOM05D005916 ORTHO05D007168 1.3e-61 240.4 187 66.3
BNapus_Darmor_BZH_scaffold_38p01960 Brassica napus HOM05D005916 ORTHO05D007168 2.2e-61 239.6 210 62.9
Hund13383 Selenicereus undatus HOM05D005916 ORTHO05D007168 2.2e-61 239.6 199 64.3
BolC2t06995H Brassica oleracea HOM05D005916 ORTHO05D007168 4.9e-61 238.4 210 62.9
CDE06G1827 Ceratophyllum demersum HOM05D005916 ORTHO05D007168 6.4e-61 238.0 188 66.0
BcaC04g19397 Brassica carinata HOM05D005916 ORTHO05D007168 1.1e-60 237.3 209 64.6
BolC9t58480H Brassica oleracea HOM05D003971 ORTHO05D004762 1.4e-60 236.9 210 64.3
ClCG07G017200 Citrullus lanatus HOM05D005916 ORTHO05D007168 3.2e-60 235.7 183 67.8
Sed0012421 Sechium edule HOM05D001364 ORTHO05D007168 4.2e-60 235.3 173 71.7
TWI39G0778 Tripterygium wilfordii HOM05D005916 ORTHO05D007168 7.1e-60 234.6 202 61.4
C09p56130 Brassica napus HOM05D003971 ORTHO05D004762 1.6e-59 233.4 210 63.8
AUR62029119 Chenopodium quinoa HOM05D005916 ORTHO05D007168 3.5e-59 232.3 190 64.7
ATR1098G017 Amborella trichopoda HOM05D005916 ORTHO05D007168 4.6e-59 231.9 186 65.6
Nn6g33759 Nelumbo nucifera HOM05D005916 ORTHO05D007168 1.0e-58 230.7 213 60.1
Lalb_Chr24g0402981 Lupinus albus HOM05D005916 ORTHO05D007168 1.8e-58 229.9 208 62.0
Nitab4.5_0003429g0010 Nicotiana tabacum HOM05D005916 ORTHO05D007168 1.8e-58 229.9 185 67.6
Lsat_1_v5_gn_8_11541 Lactuca sativa HOM05D005916 ORTHO05D007168 3.0e-58 229.2 207 63.8
CiPaw.07G182800 Carya illinoinensis HOM05D005916 ORTHO05D007168 5.1e-58 228.4 204 64.2
Hma1.2p1_1014F.1_g247870 Hydrangea macrophylla HOM05D005916 ORTHO05D007168 1.9e-57 226.5 213 64.3
HanXRQChr08g0223361 Helianthus annuus HOM05D005916 ORTHO05D007168 4.3e-57 225.3 206 62.6
HanXRQChr03g0069461 Helianthus annuus HOM05D005916 ORTHO05D007168 1.1e-55 220.7 206 61.7
Os10g0564100 Oryza sativa ssp. japonica HOM05D005916 ORTHO05D007168 2.4e-55 219.5 190 63.7
CAN.G297.9 Capsicum annuum HOM05D005916 ORTHO05D007168 4.0e-55 218.8 202 62.4
TPR.G9644 Trifolium pratense HOM05D005916 ORTHO05D007168 4.0e-55 218.8 185 61.6
Atru.chr6.592 Acer truncatum HOM05D005916 ORTHO05D007168 2.0e-54 216.5 155 69.0
Mapoly0098s0031 Marchantia polymorpha HOM05D005916 ORTHO05D007168 7.6e-54 214.5 139 77.0
QL02p099223 Quercus lobata HOM05D005916 ORTHO05D007168 7.6e-54 214.5 207 57.5
Lj8A49T46 Lonicera japonica HOM05D005916 ORTHO05D007168 4.9e-53 211.8 156 73.7
Pp3c26_180 Physcomitrium patens HOM05D005916 ORTHO05D007168 1.1e-52 210.7 116 81.0
Os07g0164600 Oryza sativa ssp. japonica HOM05D005916 ORTHO05D007168 9.3e-52 207.6 191 60.2
CDE06G2153 Ceratophyllum demersum HOM05D005916 ORTHO05D007168 1.2e-51 207.2 194 60.3
AagrBONN_evm.TU.Sc2ySwM_362.2892 Anthoceros agrestis HOM05D005916 ORTHO05D007168 6.7e-50 201.4 119 79.0
Rhsim09G0188200 Rhododendron simsii HOM05D001364 ORTHO05D001316 5.7e-49 198.4 205 56.1
SalBow2G2523 Salvia bowleyana HOM05D005916 ORTHO05D007168 8.2e-48 194.5 159 68.6
Dinv21889 Davidia involucrata HOM05D005916 ORTHO05D007168 2.4e-47 193.0 199 56.3
CAN.G706.26 Capsicum annuum HOM05D005916 ORTHO05D007168 2.9e-45 186.0 159 66.0
SEGI_39874 Sequoiadendron giganteum HOM05D005916 ORTHO05D007168 3.8e-45 185.7 91 93.4
AUR62015003 Chenopodium quinoa HOM05D005916 ORTHO05D007168 5.0e-45 185.3 104 81.7
Hma1.2p1_1014F.1_g247880 Hydrangea macrophylla HOM05D005916 ORTHO05D007168 5.5e-44 181.8 90 91.1
SMO197G0072 Selaginella moellendorffii HOM05D005916 ORTHO05D007168 3.0e-34 149.4 87 77.0
Actinidia31761 Actinidia chinensis HOM05D005916 ORTHO05D007168 2.5e-33 146.4 213 46.5
PRCOL_00001580 Prasinoderma coloniale HOM05D005916 ORTHO05D007168 6.5e-29 131.7 112 50.9
Peaxi162Scf00073g01818 Petunia axillaris HOM05D005916 ORTHO05D007168 1.4e-28 130.6 121 62.8
unitig_90.g27553 Utricularia gibba HOM05D005916 ORTHO05D007168 2.5e-28 129.8 128 60.9
Dinv34527 Davidia involucrata HOM05D005916 ORTHO05D007168 1.7e-24 117.1 59 89.8
MCO04G185 Micromonas commoda HOM05D005916 ORTHO05D007168 1.8e-23 113.6 93 53.8
Actinidia01032 Actinidia chinensis HOM05D005916 ORTHO05D007168 1.3e-21 107.5 209 42.1
Pp3c13_24550 Physcomitrium patens HOM05D005916 ORTHO05D007168 7.2e-20 101.7 126 47.6
FAN21G1143 Fragaria x ananassa HOM05D005916 ORTHO05D007168 2.3e-18 96.7 56 85.7
CBR_g3263 Chara braunii HOM05D000019 ORTHO05D000353 3.3e-17 92.8 83 55.4
FAN11G3144 Fragaria x ananassa HOM05D005916 ORTHO05D007168 1.9e-12 77.0 109 50.5
Cre12.g520850 Chlamydomonas reinhardtii HOM05D005916 ORTHO05D007168 7.2e-12 75.1 121 38.8
Solyc03g094070.4 Solanum lycopersicum HOM05D005916 ORTHO05D007168 6.8e-10 68.6 82 46.3
SalBow2G0368 Salvia bowleyana HOM05D005916 ORTHO05D007168 9.8e-09 64.7 29 89.7
Cfa025999 Carpinus fangiana HOM05D005916 ORTHO05D007168 2.7e-06 56.6 83 42.2
Dinv07271 Davidia involucrata HOM05D005916 ORTHO05D007168 7.7e-06 55.1 34 70.6


User provided reference genes

Program Settings