Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G1839 Fragaria x ananassa HOM05D003683 ORTHO05D004143 3.4e-50 201.4 106 100.0
FvH4_7g12070 Fragaria vesca HOM05D003683 ORTHO05D004143 4.1e-48 194.5 107 98.1
FAN06G0493 Fragaria x ananassa HOM05D003683 ORTHO05D004143 4.1e-48 194.5 107 98.1
FAN06G2934 Fragaria x ananassa HOM05D003683 ORTHO05D004143 1.2e-47 193.0 107 97.2
FAN10G4272 Fragaria x ananassa HOM05D003683 ORTHO05D004143 2.0e-47 192.2 107 97.2
RcHm_v2.0_Chr1g0350821 Rosa chinensis HOM05D003683 ORTHO05D004143 2.0e-42 175.6 107 90.7
FAN01G1734 Fragaria x ananassa HOM05D003683 ORTHO05D004143 3.4e-42 174.9 107 88.8
Prupe.2G147300 Prunus persica HOM05D003683 ORTHO05D004143 8.3e-25 117.1 99 71.7
MD02G1201500 Malus domestica HOM05D003683 ORTHO05D004143 3.6e-20 101.7 102 67.6
MD07G1124000 Malus domestica HOM05D003683 ORTHO05D004143 3.4e-18 95.1 99 61.6
Cfa001703 Carpinus fangiana HOM05D003683 ORTHO05D004143 1.1e-16 90.1 100 60.0
Dinv43725 Davidia involucrata HOM05D003683 ORTHO05D004143 7.1e-16 87.4 112 55.4
CiPaw.01G260700 Carya illinoinensis HOM05D003683 ORTHO05D004143 2.1e-15 85.9 100 58.0
Dinv32390 Davidia involucrata HOM05D003683 ORTHO05D004143 1.3e-14 83.2 104 54.8
Potri.002G149600 Populus trichocarpa HOM05D003683 ORTHO05D004143 6.6e-14 80.9 101 57.4
Hma1.2p1_0138F.1_g062970 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 1.5e-13 79.7 96 51.0
CSS0021060 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 4.3e-13 78.2 102 48.0
CiPaw.02G166400 Carya illinoinensis HOM05D003683 ORTHO05D004143 9.5e-13 77.0 87 56.3
Haze_09035 Corylus avellana HOM05D003683 ORTHO05D004143 9.5e-13 77.0 108 49.1
Manes.01G264900 Manihot esculenta HOM05D003683 ORTHO05D004143 9.5e-13 77.0 113 51.3
CAN.G630.45 Capsicum annuum HOM05D003683 ORTHO05D004143 1.2e-12 76.6 107 47.7
CiPaw.11G145300 Carya illinoinensis HOM05D003683 ORTHO05D004143 1.2e-12 76.6 105 47.6
Potri.014G071200 Populus trichocarpa HOM05D003683 ORTHO05D004143 1.6e-12 76.3 101 53.5
CSS0019244 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 2.1e-12 75.9 93 53.8
Cfa012041 Carpinus fangiana HOM05D003683 ORTHO05D004143 2.1e-12 75.9 108 49.1
ClCG05G002130 Citrullus lanatus HOM05D003683 ORTHO05D004143 2.1e-12 75.9 115 47.8
Sed0003331 Sechium edule HOM05D003683 ORTHO05D004143 2.1e-12 75.9 95 53.7
CiPaw.12G102800 Carya illinoinensis HOM05D003683 ORTHO05D004143 2.8e-12 75.5 94 47.9
Sopen08g003530 Solanum pennellii HOM05D003683 ORTHO05D004143 2.8e-12 75.5 91 51.6
TAR375G1063 Trochodendron aralioides HOM05D003683 ORTHO05D004143 2.8e-12 75.5 96 53.1
GSVIVG01019925001 Vitis vinifera HOM05D003683 ORTHO05D004143 8.1e-12 73.9 93 49.5
Duzib133G0707 Durio zibethinus HOM05D003683 ORTHO05D004143 1.1e-11 73.6 100 54.0
Hma1.2p1_3528F.1_g336600 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 1.1e-11 73.6 107 52.3
QL12p015617 Quercus lobata HOM05D003683 ORTHO05D004143 1.4e-11 73.2 94 50.0
Thecc.01G374500 Theobroma cacao HOM05D003683 ORTHO05D004143 1.4e-11 73.2 99 50.5
Dinv39058 Davidia involucrata HOM05D003683 ORTHO05D004143 1.8e-11 72.8 95 47.4
PGSC0003DMG400012487 Solanum tuberosum HOM05D003683 ORTHO05D004143 2.3e-11 72.4 91 49.5
A05p05480 Brassica napus HOM05D003683 ORTHO05D004143 3.1e-11 72.0 95 49.5
BraA05t19518Z Brassica rapa HOM05D003683 ORTHO05D004143 3.1e-11 72.0 95 49.5
COL.COLO4_12571 Corchorus olitorius HOM05D003683 ORTHO05D004143 4.0e-11 71.6 114 48.2
Potri.003G117200 Populus trichocarpa HOM05D003683 ORTHO05D004143 4.0e-11 71.6 94 51.1
TAR629G0669 Trochodendron aralioides HOM05D003683 ORTHO05D004143 4.0e-11 71.6 92 50.0
BcaC02g12206 Brassica carinata HOM05D003683 ORTHO05D004143 5.2e-11 71.2 95 49.5
C04p06420 Brassica napus HOM05D003683 ORTHO05D004143 5.2e-11 71.2 95 49.5
BolC4t22265H Brassica oleracea HOM05D003683 ORTHO05D004143 5.2e-11 71.2 95 49.5
Dinv37740 Davidia involucrata HOM05D003683 ORTHO05D004143 5.2e-11 71.2 92 45.7
Duzib138G1197 Durio zibethinus HOM05D003683 ORTHO05D004143 5.2e-11 71.2 110 48.2
PGR042G1830 Punica granatum HOM05D003683 ORTHO05D004143 5.2e-11 71.2 98 43.9
CsaV3_5G003580 Cucumis sativus L. HOM05D003683 ORTHO05D004143 6.8e-11 70.9 93 47.3
TAR629G3017 Trochodendron aralioides HOM05D003683 ORTHO05D004143 6.8e-11 70.9 101 46.5
Atru.chr9.1472 Acer truncatum HOM05D003683 ORTHO05D004143 8.9e-11 70.5 75 57.3
Eucgr.E00491 Eucalyptus grandis HOM05D003683 ORTHO05D004143 8.9e-11 70.5 93 47.3
Oeu064712.1 Olea europaea HOM05D003683 ORTHO05D004143 8.9e-11 70.5 96 52.1
Peaxi162Scf00102g01336 Petunia axillaris HOM05D003683 ORTHO05D004143 8.9e-11 70.5 93 48.4
BcaB02g08997 Brassica carinata HOM05D003683 ORTHO05D004143 1.2e-10 70.1 95 48.4
A03p25230 Brassica napus HOM05D003683 ORTHO05D004143 1.2e-10 70.1 95 48.4
MELO3C006178.2 Cucumis melo HOM05D003683 ORTHO05D004143 1.2e-10 70.1 119 46.2
Aqoxy7G00590 Aquilegia oxysepala HOM05D003683 ORTHO05D004143 1.5e-10 69.7 94 48.9
EL10Ac5g12652 Beta vulgaris HOM05D003683 ORTHO05D004143 1.5e-10 69.7 106 44.3
Hma1.2p1_1793F.1_g302590 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 1.5e-10 69.7 106 50.9
Sabra01G0087900 Salix brachista HOM05D003683 ORTHO05D004143 1.5e-10 69.7 93 51.6
Glyma.18G221800 Glycine max HOM05D003683 ORTHO05D004143 2.0e-10 69.3 76 56.6
Manes.02G031900 Manihot esculenta HOM05D003683 ORTHO05D004143 2.0e-10 69.3 93 49.5
Peaxi162Scf00021g00139 Petunia axillaris HOM05D003683 ORTHO05D004143 3.4e-10 68.6 108 50.0
Sp4g27480 Schrenkiella parvula HOM05D003683 ORTHO05D004143 3.4e-10 68.6 91 50.5
PGSC0003DMG400003921 Solanum tuberosum HOM05D003683 ORTHO05D004143 3.4e-10 68.6 108 42.6
MELO3C005596.2 Cucumis melo HOM05D003683 ORTHO05D004143 4.4e-10 68.2 93 46.2
Thhalv10001694m.g Eutrema salsugineum HOM05D003683 ORTHO05D004143 4.4e-10 68.2 91 50.5
GSVIVG01027629001 Vitis vinifera HOM05D003683 ORTHO05D004143 4.4e-10 68.2 104 53.8
BcaC01g05122 Brassica carinata HOM05D003683 ORTHO05D004143 5.8e-10 67.8 95 49.5
BcaC01g05135 Brassica carinata HOM05D003683 ORTHO05D004143 5.8e-10 67.8 95 49.5
CARHR140640 Cardamine hirsuta HOM05D003683 ORTHO05D004143 5.8e-10 67.8 91 51.6
CsaV3_3G009560 Cucumis sativus L. HOM05D003683 ORTHO05D004143 5.8e-10 67.8 98 49.0
BcaB01g03267 Brassica carinata HOM05D003683 ORTHO05D004143 7.6e-10 67.4 95 48.4
Lj2A204T52 Lonicera japonica HOM05D003683 ORTHO05D004143 9.9e-10 67.0 95 49.5
C03p30100 Brassica napus HOM05D003683 ORTHO05D004143 1.3e-09 66.6 95 48.4
Hund14673 Selenicereus undatus HOM05D003683 ORTHO05D004143 1.3e-09 66.6 95 47.4
TWI23G1078 Tripterygium wilfordii HOM05D003683 ORTHO05D004143 1.7e-09 66.2 83 53.0
Actinidia14483 Actinidia chinensis HOM05D003683 ORTHO05D004143 2.2e-09 65.9 92 45.7
AL4G44620 Arabidopsis lyrata HOM05D003683 ORTHO05D004143 2.2e-09 65.9 91 50.5
BcaB02g08986 Brassica carinata HOM05D003683 ORTHO05D004143 2.2e-09 65.9 91 48.4
Lj3g0025203 Lotus japonicus HOM05D003683 ORTHO05D004143 2.2e-09 65.9 96 46.9
COL.COLO4_23839 Corchorus olitorius HOM05D003683 ORTHO05D004143 2.9e-09 65.5 74 52.7
Phvul.008G075300 Phaseolus vulgaris HOM05D003683 ORTHO05D004143 2.9e-09 65.5 81 48.1
Carub.0004s2806 Capsella rubella HOM05D003683 ORTHO05D004143 3.8e-09 65.1 90 51.1
Gohir.A12G222400 Gossypium hirsutum HOM05D003683 ORTHO05D004143 3.8e-09 65.1 74 52.7
Gohir.D11G086200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 3.8e-09 65.1 88 53.4
Gorai.008G114600 Gossypium raimondii HOM05D003683 ORTHO05D004143 3.8e-09 65.1 102 44.1
Hund11555 Selenicereus undatus HOM05D003683 ORTHO05D004143 3.8e-09 65.1 81 49.4
Sopen08g028050 Solanum pennellii HOM05D003683 ORTHO05D004143 3.8e-09 65.1 95 45.3
Gorai.008G241000 Gossypium raimondii HOM05D003683 ORTHO05D004143 4.9e-09 64.7 95 46.3
Sabra02G0118400 Salix brachista HOM05D003683 ORTHO05D004143 4.9e-09 64.7 84 50.0
vmacro00217 Vaccinium macrocarpon HOM05D003683 ORTHO05D004143 4.9e-09 64.7 92 50.0
A04p33850 Brassica napus HOM05D003683 ORTHO05D004143 6.4e-09 64.3 91 48.4
BraA04t18845Z Brassica rapa HOM05D003683 ORTHO05D004143 6.4e-09 64.3 91 48.4
AUR62017361 Chenopodium quinoa HOM05D003683 ORTHO05D004143 6.4e-09 64.3 81 50.6
Solyc08g079690.4 Solanum lycopersicum HOM05D003683 ORTHO05D004143 6.4e-09 64.3 95 45.3
Gohir.A03G010200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 8.4e-09 63.9 93 46.2
Lalb_Chr03g0039121 Lupinus albus HOM05D003683 ORTHO05D004143 8.4e-09 63.9 117 41.9
Oeu056803.1 Olea europaea HOM05D003683 ORTHO05D004143 8.4e-09 63.9 95 45.3
TWI60G0451 Tripterygium wilfordii HOM05D003683 ORTHO05D004143 8.4e-09 63.9 97 43.3
AT2G45450 Arabidopsis thaliana HOM05D003683 ORTHO05D004143 1.1e-08 63.5 91 48.4
Glyma.03G022200 Glycine max HOM05D003683 ORTHO05D004143 1.1e-08 63.5 115 41.7
Thecc.03G264300 Theobroma cacao HOM05D003683 ORTHO05D004143 1.1e-08 63.5 74 54.1
Glyma.09G268100 Glycine max HOM05D003683 ORTHO05D004143 1.4e-08 63.2 70 50.0
Gohir.D03G159600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.4e-08 63.2 93 46.2
VMungo1383G1500 Vigna mungo HOM05D003683 ORTHO05D004143 1.4e-08 63.2 81 46.9
MSTRG.13795 Avicennia marina HOM05D003683 ORTHO05D004143 1.9e-08 62.8 92 50.0
BcaB02g07396 Brassica carinata HOM05D003683 ORTHO05D004143 1.9e-08 62.8 96 46.9
Manes.01G071300 Manihot esculenta HOM05D003683 ORTHO05D004143 1.9e-08 62.8 94 47.9
Potri.001G114900 Populus trichocarpa HOM05D003683 ORTHO05D004143 1.9e-08 62.8 94 46.8
AUR62010534 Chenopodium quinoa HOM05D003683 ORTHO05D004143 2.4e-08 62.4 81 48.1
CARHR171270 Cardamine hirsuta HOM05D003683 ORTHO05D004143 3.2e-08 62.0 102 46.1
ClCG01G003480 Citrullus lanatus HOM05D003683 ORTHO05D004143 3.2e-08 62.0 93 43.0
Gohir.A12G102100 Gossypium hirsutum HOM05D003683 ORTHO05D004143 4.1e-08 61.6 102 42.2
Gohir.D12G224900 Gossypium hirsutum HOM05D003683 ORTHO05D004143 4.1e-08 61.6 95 45.3
ECA233G3941 Erigeron canadensis HOM05D003683 ORTHO05D004143 7.1e-08 60.8 81 49.4
Gohir.A11G081600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 9.2e-08 60.5 88 51.1
Gohir.D12G105300 Gossypium hirsutum HOM05D003683 ORTHO05D004143 9.2e-08 60.5 103 41.7
Gorai.003G167900 Gossypium raimondii HOM05D003683 ORTHO05D004143 9.2e-08 60.5 93 45.2
MBI04_g32262_MAGBIO Magnolia biondii HOM05D003683 ORTHO05D004143 9.2e-08 60.5 92 43.5
BcaC02g07091 Brassica carinata HOM05D003683 ORTHO05D004143 1.2e-07 60.1 92 44.6
C04p71580 Brassica napus HOM05D003683 ORTHO05D004143 1.2e-07 60.1 92 44.6
BolC4t28663H Brassica oleracea HOM05D003683 ORTHO05D004143 1.2e-07 60.1 92 44.6
DCAR_008443 Daucus carota HOM05D003683 ORTHO05D004143 1.6e-07 59.7 92 43.5
HanXRQChr17g0557021 Helianthus annuus HOM05D003683 ORTHO05D004143 2.1e-07 59.3 96 45.8
Aa31LG1G26950 Aethionema arabicum HOM05D003683 ORTHO05D004143 2.7e-07 58.9 93 45.2
A04p01350 Brassica napus HOM05D003683 ORTHO05D004143 2.7e-07 58.9 92 46.7
Lsat_1_v5_gn_6_10220 Lactuca sativa HOM05D003683 ORTHO05D004143 2.7e-07 58.9 100 45.0
AT3G60890 Arabidopsis thaliana HOM05D003683 ORTHO05D004143 4.6e-07 58.2 98 40.8
BcaB06g29422 Brassica carinata HOM05D003683 ORTHO05D004143 4.6e-07 58.2 92 45.7
Cc02_g36550 Coffea canephora HOM05D003683 ORTHO05D004143 4.6e-07 58.2 108 39.8
Nn4g26435 Nelumbo nucifera HOM05D003683 ORTHO05D004143 4.6e-07 58.2 92 47.8
Sabra03G0081600 Salix brachista HOM05D003683 ORTHO05D004143 4.6e-07 58.2 93 45.2
Sed0005281 Sechium edule HOM05D003683 ORTHO05D004143 4.6e-07 58.2 73 47.9
Rhsim11G0007500 Rhododendron simsii HOM05D003683 ORTHO05D004143 6.0e-07 57.8 92 45.7
Carub.0005s2764 Capsella rubella HOM05D003683 ORTHO05D004143 7.8e-07 57.4 101 44.6
Lsat_1_v5_gn_4_37980 Lactuca sativa HOM05D003683 ORTHO05D004143 7.8e-07 57.4 107 41.1
Medtr7g075120 Medicago truncatula HOM05D003683 ORTHO05D004143 7.8e-07 57.4 72 47.2
Sp5g02360 Schrenkiella parvula HOM05D003683 ORTHO05D004143 7.8e-07 57.4 97 43.3
Sed0004645 Sechium edule HOM05D003683 ORTHO05D004143 7.8e-07 57.4 93 43.0
Cc08_g13490 Coffea canephora HOM05D003683 ORTHO05D004143 1.3e-06 56.6 102 41.2
Thhalv10006309m.g Eutrema salsugineum HOM05D003683 ORTHO05D004143 1.3e-06 56.6 97 43.3
AL5G43210 Arabidopsis lyrata HOM05D003683 ORTHO05D004143 1.7e-06 56.2 97 43.3
ATR0820G297 Amborella trichopoda HOM05D003360 ORTHO05D003759 2.3e-06 55.8 43 67.4
Glyma.01G144700 Glycine max HOM05D003683 ORTHO05D004143 2.3e-06 55.8 65 50.8
CDE02G3545 Ceratophyllum demersum HOM05D003683 ORTHO05D004143 3.0e-06 55.5 67 46.3
Phvul.010G085600 Phaseolus vulgaris HOM05D003683 ORTHO05D004143 3.0e-06 55.5 78 44.9
SalBow6G6235 Salvia bowleyana HOM05D003683 ORTHO05D004143 3.0e-06 55.5 63 55.6
BolC4t24719H Brassica oleracea HOM05D003683 ORTHO05D004143 3.9e-06 55.1 43 65.1
BraA04t15855Z Brassica rapa HOM05D003683 ORTHO05D004143 3.9e-06 55.1 43 65.1
HanXRQChr16g0521651 Helianthus annuus HOM05D003683 ORTHO05D004143 3.9e-06 55.1 83 47.0
Manes.05G044050 Manihot esculenta HOM05D003683 ORTHO05D004143 3.9e-06 55.1 59 55.9
Nitab4.5_0006122g0030 Nicotiana tabacum HOM05D003683 ORTHO05D004143 3.9e-06 55.1 49 59.2
BcaC02g10196 Brassica carinata HOM05D003683 ORTHO05D004143 5.1e-06 54.7 93 43.0
Cpa.g.sc29.63 Carica papaya HOM05D003683 ORTHO05D004143 5.1e-06 54.7 41 70.7
Ciclev10023705m.g Citrus clementina HOM05D003683 ORTHO05D004143 6.6e-06 54.3 89 39.3
ATR0810G009 Amborella trichopoda HOM05D003683 ORTHO05D004143 8.6e-06 53.9 61 52.5


User provided reference genes

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