Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G1776 Fragaria x ananassa HOM05D000974 ORTHO05D007456 6.4e-163 577.4 304 100.0
FAN06G4709 Fragaria x ananassa HOM05D000974 ORTHO05D007456 1.2e-161 573.2 304 99.0
FvH4_7g31090 Fragaria vesca HOM05D000974 ORTHO05D007456 6.0e-161 570.9 304 98.7
FAN06G0673 Fragaria x ananassa HOM05D000974 ORTHO05D007456 6.0e-161 570.9 304 98.7
FAN03G2436 Fragaria x ananassa HOM05D000974 ORTHO05D006000 1.3e-160 569.7 300 99.7
FAN10G1818 Fragaria x ananassa HOM05D000974 ORTHO05D006000 9.6e-159 563.5 300 99.0
RcHm_v2.0_Chr1g0380171 Rosa chinensis HOM05D000974 ORTHO05D007456 2.7e-153 545.4 299 94.6
MD07G1285800 Malus domestica HOM05D000974 ORTHO05D007456 2.3e-120 436.0 313 73.8
TWI39G1278 Tripterygium wilfordii HOM05D000974 ORTHO05D007456 1.2e-116 423.7 304 73.4
Prupe.2G308000 Prunus persica HOM05D000974 ORTHO05D002201 2.2e-115 419.5 307 72.6
MD01G1215900 Malus domestica HOM05D000974 ORTHO05D007456 8.0e-113 411.0 313 70.9
Ciclev10005489m.g Citrus clementina HOM05D000974 ORTHO05D007456 9.8e-111 404.1 311 69.5
Potri.015G021400 Populus trichocarpa HOM05D000974 ORTHO05D007456 8.3e-110 401.0 302 69.9
Manes.06G157800 Manihot esculenta HOM05D000974 ORTHO05D007456 1.1e-109 400.6 302 69.5
Potri.015G021100 Populus trichocarpa HOM05D000974 ORTHO05D007456 3.1e-109 399.1 302 69.5
Actinidia34202 Actinidia chinensis HOM05D000974 ORTHO05D007456 3.5e-108 395.6 304 69.1
Potri.012G031000 Populus trichocarpa HOM05D000974 ORTHO05D007456 3.5e-108 395.6 304 68.4
PGR142G2075 Punica granatum HOM05D000974 ORTHO05D007456 7.7e-108 394.4 309 68.0
DCAR_020306 Daucus carota HOM05D000974 ORTHO05D007456 2.9e-107 392.5 305 68.2
GSVIVG01028702001 Vitis vinifera HOM05D000974 ORTHO05D007456 4.7e-105 385.2 303 65.0
ClCG01G000560 Citrullus lanatus HOM05D000974 ORTHO05D007456 3.0e-104 382.5 304 67.4
Thecc.03G193600 Theobroma cacao HOM05D000974 ORTHO05D007456 4.0e-104 382.1 302 66.6
Haze_00118 Corylus avellana HOM05D000974 ORTHO05D007456 1.2e-103 380.6 304 67.8
COL.COLO4_35640 Corchorus olitorius HOM05D000974 ORTHO05D007456 1.5e-103 380.2 304 64.5
Migut.F00239 Erythranthe guttata HOM05D000974 ORTHO05D007456 1.5e-103 380.2 313 65.2
CSS0027071 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D007456 7.5e-103 377.9 311 65.0
Gohir.D09G178500 Gossypium hirsutum HOM05D000974 ORTHO05D007456 7.5e-103 377.9 304 65.8
vmacro06564 Vaccinium macrocarpon HOM05D000974 ORTHO05D007456 1.3e-102 377.1 340 59.7
Dinv28331 Davidia involucrata HOM05D000974 ORTHO05D007456 1.7e-102 376.7 255 74.5
CANSAT21G0519 Cannabis sativa HOM05D000974 ORTHO05D007456 2.2e-102 376.3 315 63.2
Ca_16682_v3 Cicer arietinum L. HOM05D000974 ORTHO05D007456 3.7e-102 375.6 300 64.3
AUR62006147 Chenopodium quinoa HOM05D000974 ORTHO05D007456 4.9e-102 375.2 305 65.6
CsaV3_5G000660 Cucumis sativus L. HOM05D000974 ORTHO05D007456 4.9e-102 375.2 304 66.1
Gohir.A09G183700 Gossypium hirsutum HOM05D000974 ORTHO05D007456 4.1e-101 372.1 304 64.5
Gorai.006G200500 Gossypium raimondii HOM05D000974 ORTHO05D007456 4.1e-101 372.1 304 65.1
Cc02_g01830 Coffea canephora HOM05D000974 ORTHO05D007456 5.9e-100 368.2 304 64.1
EL10Ac3g05342 Beta vulgaris HOM05D000974 ORTHO05D007456 7.8e-100 367.9 315 63.8
Oeu060978.1 Olea europaea HOM05D000974 ORTHO05D007456 1.7e-99 366.7 305 64.9
Glyma.04G238050 Glycine max HOM05D000974 ORTHO05D007456 2.9e-99 365.9 303 62.4
Glyma.06G125900 Glycine max HOM05D000974 ORTHO05D007456 2.9e-99 365.9 303 61.4
Nitab4.5_0005625g0010 Nicotiana tabacum HOM05D000974 ORTHO05D007456 2.9e-99 365.9 304 64.5
TPR.G17305 Trifolium pratense HOM05D000974 ORTHO05D007456 2.9e-99 365.9 308 62.7
Medtr3g090955 Medicago truncatula HOM05D000974 ORTHO05D007456 3.9e-99 365.5 304 62.8
Sabra12G0020600 Salix brachista HOM05D000974 ORTHO05D007456 5.0e-99 365.2 315 62.9
Lalb_Chr11g0066601 Lupinus albus HOM05D000974 ORTHO05D007456 1.1e-98 364.0 304 63.2
Nitab4.5_0002589g0050 Nicotiana tabacum HOM05D000974 ORTHO05D007456 1.5e-98 363.6 302 65.2
VMungo1309G2916 Vigna mungo HOM05D000974 ORTHO05D007456 1.5e-98 363.6 307 60.9
Phvul.009G137800 Phaseolus vulgaris HOM05D000974 ORTHO05D007456 1.2e-97 360.5 303 59.7
Sed0023834 Sechium edule HOM05D000974 ORTHO05D007456 1.2e-97 360.5 304 63.5
arahy.Tifrunner.gnm1.ann1.D5FDUQ Arachis hypogaea HOM05D000974 ORTHO05D007456 2.8e-97 359.4 303 61.1
arahy.Tifrunner.gnm1.ann1.LG8YER Arachis hypogaea HOM05D000974 ORTHO05D007456 2.8e-97 359.4 303 61.1
vmacro10108 Vaccinium macrocarpon HOM05D000974 ORTHO05D007456 1.8e-96 356.7 304 63.8
Peaxi162Scf00904g00123 Petunia axillaris HOM05D000974 ORTHO05D007456 8.9e-96 354.4 304 63.2
PSO384G1506 Papaver somniferum HOM05D000974 ORTHO05D007456 1.2e-95 354.0 306 62.1
Rhsim09G0204100 Rhododendron simsii HOM05D000974 ORTHO05D007456 3.4e-95 352.4 300 64.0
PSO135G0499 Papaver somniferum HOM05D000974 ORTHO05D007456 9.8e-95 350.9 306 62.1
TAR636G3288 Trochodendron aralioides HOM05D000974 ORTHO05D007456 1.3e-94 350.5 304 63.8
Lsat_1_v5_gn_9_57980 Lactuca sativa HOM05D000974 ORTHO05D007456 2.9e-94 349.4 307 63.5
CARHR189450 Cardamine hirsuta HOM05D000974 ORTHO05D007456 6.4e-94 348.2 319 58.9
Thhalv10005277m.g Eutrema salsugineum HOM05D000974 ORTHO05D007456 8.3e-94 347.8 319 59.2
AL6G35490 Arabidopsis lyrata HOM05D000974 ORTHO05D007456 1.1e-93 347.4 319 59.2
SalBow4G2102 Salvia bowleyana HOM05D000974 ORTHO05D007456 1.9e-93 346.7 309 61.5
BcaNung01212 Brassica carinata HOM05D000974 ORTHO05D007456 2.4e-93 346.3 319 59.6
A06p34970 Brassica napus HOM05D000974 ORTHO05D007456 7.0e-93 344.7 319 58.9
BraA06t26421Z Brassica rapa HOM05D000974 ORTHO05D007456 7.0e-93 344.7 319 58.9
AUR62019342 Chenopodium quinoa HOM05D000974 ORTHO05D007456 9.2e-93 344.4 304 62.2
C07p43580 Brassica napus HOM05D000974 ORTHO05D007456 1.2e-92 344.0 319 58.9
BolC7t44885H Brassica oleracea HOM05D000974 ORTHO05D007456 1.2e-92 344.0 319 58.9
AT5G24130 Arabidopsis thaliana HOM05D000974 ORTHO05D007456 2.0e-92 343.2 318 59.4
Rhsim03G0199900 Rhododendron simsii HOM05D000974 ORTHO05D007456 3.5e-92 342.4 304 61.8
Aqoxy7G00132 Aquilegia oxysepala HOM05D000974 ORTHO05D007456 4.6e-92 342.0 308 61.4
BcaNung01815 Brassica carinata HOM05D000974 ORTHO05D007456 6.0e-92 341.7 319 58.3
Sp2g23180 Schrenkiella parvula HOM05D000974 ORTHO05D007456 8.6e-91 337.8 320 58.4
THA.LOC104821367 Tarenaya hassleriana HOM05D000974 ORTHO05D007456 8.6e-91 337.8 313 61.0
HanXRQChr09g0253031 Helianthus annuus HOM05D000974 ORTHO05D007456 3.3e-90 335.9 293 62.5
unitig_747.g21851 Utricularia gibba HOM05D000974 ORTHO05D007456 1.2e-89 334.0 265 66.0
Cpa.g.sc34.147 Carica papaya HOM05D000974 ORTHO05D007456 3.6e-89 332.4 304 60.5
Aa31LG11G3400 Aethionema arabicum HOM05D000974 ORTHO05D007456 1.8e-88 330.1 315 57.1
ECA232G4254 Erigeron canadensis HOM05D000974 ORTHO05D007456 2.3e-88 329.7 311 59.8
SGA_v2.0_scaffold192G40573 Striga asiatica HOM05D000974 ORTHO05D007456 3.1e-88 329.3 311 58.5
Carub.0006s2186 Capsella rubella HOM05D000974 ORTHO05D007456 4.0e-88 328.9 318 57.5
Lj1g0000480 Lotus japonicus HOM05D000974 ORTHO05D007456 8.9e-88 327.8 305 57.7
Cfa016368 Carpinus fangiana HOM05D000974 ORTHO05D007456 2.4e-85 319.7 309 61.2
Psat5g079560 Pisum sativum HOM05D000974 ORTHO05D007456 3.2e-85 319.3 303 57.1
Atru.chr1.258 Acer truncatum HOM05D000974 ORTHO05D007456 4.1e-85 318.9 307 59.3
Lj1A1013G39 Lonicera japonica HOM05D000974 ORTHO05D007456 4.1e-85 318.9 304 58.6
TAR375G0325 Trochodendron aralioides HOM05D000974 ORTHO05D007456 1.7e-83 313.5 306 59.5
Lsat_1_v5_gn_2_134181 Lactuca sativa HOM05D000974 ORTHO05D007456 5.1e-83 312.0 265 59.6
MBI07_g34227_MAGBIO Magnolia biondii HOM05D000974 ORTHO05D007456 8.6e-83 311.2 305 58.4
HanXRQChr14g0462881 Helianthus annuus HOM05D000974 ORTHO05D007456 1.2e-81 307.4 259 60.6
DCAR_014533 Daucus carota HOM05D000974 ORTHO05D007456 4.0e-80 302.4 303 58.1
SalBow4G1511 Salvia bowleyana HOM05D000974 ORTHO05D007456 3.7e-78 295.8 309 55.3
Duzib084G1361 Durio zibethinus HOM05D000974 ORTHO05D007456 4.9e-78 295.4 301 56.5
Rhsim09G0204200 Rhododendron simsii HOM05D000974 ORTHO05D007456 1.2e-76 290.8 262 60.3
Potri.015G021300 Populus trichocarpa HOM05D000974 ORTHO05D007456 2.1e-76 290.0 206 72.8
Lj3A909T48 Lonicera japonica HOM05D000974 ORTHO05D007456 3.9e-75 285.8 282 56.4
Oeu060979.1 Olea europaea HOM05D000974 ORTHO05D007456 3.8e-70 269.2 203 69.0
HPP92_005207 Vanilla planifolia HOM05D000974 ORTHO05D007456 2.3e-67 260.0 312 50.3
Nn1g01835 Nelumbo nucifera HOM05D000974 ORTHO05D007456 3.0e-67 259.6 305 51.5
FAN01G0307 Fragaria x ananassa HOM05D000974 ORTHO05D007456 1.9e-66 256.9 304 54.6
Zm00001eb238160 Zea mays HOM05D000974 ORTHO05D007456 1.3e-65 254.2 315 50.2
QL09p010742 Quercus lobata HOM05D000974 ORTHO05D007456 4.8e-65 252.3 244 57.4
ECA238G2040 Erigeron canadensis HOM05D005084 ORTHO05D006254 1.7e-62 243.8 236 55.1
CDE10G0850 Ceratophyllum demersum HOM05D000974 ORTHO05D007456 7.1e-61 238.4 304 48.0
AagrBONN_evm.TU.Sc2ySwM_117.3541 Anthoceros agrestis HOM05D000974 ORTHO05D007456 3.0e-51 206.5 270 45.6
CiPaw.05G257400 Carya illinoinensis HOM05D000974 ORTHO05D007456 5.6e-50 202.2 134 78.4
Os05g0586700 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D007456 5.8e-47 192.2 308 43.5
Zm00001eb345000 Zea mays HOM05D000974 ORTHO05D007456 1.0e-46 191.4 274 45.3
Os02g0257200 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D007456 2.5e-45 186.8 309 43.7
Sopen03g003300 Solanum pennellii HOM05D000974 ORTHO05D007456 2.5e-45 186.8 194 54.1
Mapoly0123s0011 Marchantia polymorpha HOM05D000974 ORTHO05D007456 4.6e-44 182.6 265 41.1
PGSC0003DMG400009074 Solanum tuberosum HOM05D000974 ORTHO05D007456 1.0e-43 181.4 211 49.3
MBI07_g45742_MAGBIO Magnolia biondii HOM05D000974 ORTHO05D007456 2.3e-43 180.3 305 42.0
SMO347G0394 Selaginella moellendorffii HOM05D000974 ORTHO05D007456 1.3e-41 174.5 307 39.1
Pp3c2_19140 Physcomitrium patens HOM05D000974 ORTHO05D007456 1.2e-39 167.9 264 40.2
CiPaw.05G257300 Carya illinoinensis HOM05D000974 ORTHO05D007456 4.6e-36 156.0 140 61.4
Oeu060977.1 Olea europaea HOM05D000974 ORTHO05D007456 2.3e-35 153.7 119 67.2
Hma1.2p1_1655F.1_g295980 Hydrangea macrophylla HOM05D000974 ORTHO05D007456 8.7e-35 151.8 186 48.9
Lalb_Chr08g0240561 Lupinus albus HOM05D000974 ORTHO05D007456 2.5e-34 150.2 126 64.3
Actinidia08630 Actinidia chinensis HOM05D000974 ORTHO05D007456 2.4e-32 143.7 140 58.6
Rhsim02G0197500 Rhododendron simsii HOM05D000974 ORTHO05D007456 2.0e-31 140.6 176 46.6
Rhsim04G0082700 Rhododendron simsii HOM05D000974 ORTHO05D007456 1.0e-30 138.3 176 46.0
Lalb_Chr08g0240551 Lupinus albus HOM05D000974 ORTHO05D007456 5.7e-26 122.5 124 50.8
ATR0589G055 Amborella trichopoda HOM05D000974 ORTHO05D007456 5.3e-24 115.9 120 56.7
vmacro10109 Vaccinium macrocarpon HOM05D000974 ORTHO05D007456 1.3e-22 111.3 163 41.1
Pp3c3_31670 Physcomitrium patens HOM05D000974 ORTHO05D007456 4.2e-21 106.3 158 44.9
Lalb_Chr08g0240541 Lupinus albus HOM05D000974 ORTHO05D007456 2.1e-20 104.0 100 55.0
Atru.chr1.262 Acer truncatum HOM05D000974 ORTHO05D007456 2.7e-20 103.6 103 58.3
CDE10G0750 Ceratophyllum demersum HOM05D000974 ORTHO05D007456 2.7e-20 103.6 128 47.7
TAR629G1462 Trochodendron aralioides HOM05D000974 ORTHO05D007456 8.8e-19 98.6 68 64.7
ATR0589G008 Amborella trichopoda HOM05D000974 ORTHO05D007456 6.3e-17 92.4 98 58.2
Nn3g19050 Nelumbo nucifera HOM05D000974 ORTHO05D007456 1.3e-09 68.2 101 42.6
DCAR_022594 Daucus carota HOM05D000974 ORTHO05D007456 7.0e-08 62.4 73 54.8


User provided reference genes

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