Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G1762 Fragaria x ananassa HOM05D005332 ORTHO05D006861 1.6e-177 625.9 317 100.0
FAN06G0948 Fragaria x ananassa HOM05D005332 ORTHO05D006861 6.5e-174 614.0 317 97.8
FAN06G1647 Fragaria x ananassa HOM05D005332 ORTHO05D006861 8.5e-174 613.6 317 97.5
FvH4_7g13560 Fragaria vesca HOM05D005332 ORTHO05D006861 3.2e-173 611.7 317 98.1
FAN01G1890 Fragaria x ananassa HOM05D005332 ORTHO05D006861 3.2e-173 611.7 317 97.5
FAN03G0731 Fragaria x ananassa HOM05D005332 ORTHO05D006861 2.1e-172 609.0 317 97.2
RcHm_v2.0_Chr1g0353111 Rosa chinensis HOM05D005332 ORTHO05D006861 2.5e-170 602.1 317 95.6
RcHm_v2.0_Chr0c39g0503341 Rosa chinensis HOM05D005332 ORTHO05D006861 1.1e-165 586.6 319 93.4
Prupe.2G159800 Prunus persica HOM05D005332 ORTHO05D006861 9.4e-149 530.4 314 84.1
MD07G1128800 Malus domestica HOM05D005332 ORTHO05D006861 1.3e-145 520.0 319 82.8
Haze_15198 Corylus avellana HOM05D005332 ORTHO05D006861 1.8e-136 489.6 314 79.9
Rhsim07G0018900 Rhododendron simsii HOM05D005332 ORTHO05D006861 4.1e-136 488.4 311 78.1
RcHm_v2.0_Chr1g0353281 Rosa chinensis HOM05D005332 ORTHO05D006861 7.0e-136 487.6 263 93.9
vmacro13319 Vaccinium macrocarpon HOM05D005332 ORTHO05D006861 1.3e-134 483.4 314 76.1
Actinidia09995 Actinidia chinensis HOM05D000602 ORTHO05D002573 1.5e-133 479.9 314 75.5
CANSAT56G3547 Cannabis sativa HOM05D005332 ORTHO05D006861 1.5e-133 479.9 312 78.8
Cpa.g.sc704.3 Carica papaya HOM05D005332 ORTHO05D006861 5.6e-133 478.0 316 75.3
Manes.01G260300 Manihot esculenta HOM05D005332 ORTHO05D006861 7.3e-133 477.6 317 77.3
Gohir.D11G091000 Gossypium hirsutum HOM05D005332 ORTHO05D006861 1.2e-132 476.9 315 77.1
CSS0028869 Camellia sinensis var. sinensis HOM05D005332 ORTHO05D006861 2.8e-132 475.7 320 75.0
Gorai.007G097000 Gossypium raimondii HOM05D005332 ORTHO05D006861 3.6e-132 475.3 315 76.8
CSS0045846 Camellia sinensis var. sinensis HOM05D005332 ORTHO05D006861 8.0e-132 474.2 320 74.7
Gohir.A11G082100 Gossypium hirsutum HOM05D005332 ORTHO05D006861 3.0e-131 472.2 315 76.8
Cc02_g37460 Coffea canephora HOM05D005332 ORTHO05D006861 6.8e-131 471.1 314 73.2
Duzib138G1089 Durio zibethinus HOM05D005332 ORTHO05D006861 8.9e-131 470.7 315 75.6
Thecc.01G365300 Theobroma cacao HOM05D005332 ORTHO05D006861 8.9e-131 470.7 315 76.2
TWI59G1218 Tripterygium wilfordii HOM05D005332 ORTHO05D006861 1.2e-130 470.3 312 76.3
Ciclev10021196m.g Citrus clementina HOM05D005332 ORTHO05D006861 1.7e-129 466.5 316 75.6
GSVIVG01026821001 Vitis vinifera HOM05D005332 ORTHO05D006861 2.2e-129 466.1 315 75.6
QL08p049836 Quercus lobata HOM05D005332 ORTHO05D006861 8.3e-129 464.2 350 70.3
Lsat_1_v5_gn_3_136741 Lactuca sativa HOM05D005332 ORTHO05D006861 2.4e-128 462.6 314 71.3
Sed0022570 Sechium edule HOM05D005332 ORTHO05D006861 1.2e-127 460.3 312 73.4
Glyma.07G075200 Glycine max HOM05D005332 ORTHO05D006861 2.0e-127 459.5 318 73.0
TAR374G0257 Trochodendron aralioides HOM05D005332 ORTHO05D006861 5.9e-127 458.0 316 75.0
MSTRG.28212 Avicennia marina HOM05D005332 ORTHO05D006861 7.8e-127 457.6 316 71.5
Lalb_Chr04g0256681 Lupinus albus HOM05D005332 ORTHO05D006861 7.8e-127 457.6 315 72.1
PGSC0003DMG402000019 Solanum tuberosum HOM05D005332 ORTHO05D006861 7.8e-127 457.6 317 71.3
Eucgr.E00187 Eucalyptus grandis HOM05D005332 ORTHO05D006861 1.3e-126 456.8 315 73.0
Sopen01g037990 Solanum pennellii HOM05D005332 ORTHO05D006861 2.3e-126 456.1 317 71.0
Potri.014G079700 Populus trichocarpa HOM05D005332 ORTHO05D006861 3.0e-126 455.7 316 74.7
Sabra14G0057900 Salix brachista HOM05D005332 ORTHO05D006861 3.9e-126 455.3 316 74.4
Peaxi162Scf00397g00521 Petunia axillaris HOM05D005332 ORTHO05D006861 5.0e-126 454.9 316 71.8
arahy.Tifrunner.gnm1.ann1.CH4HI7 Arachis hypogaea HOM05D005332 ORTHO05D006861 6.6e-126 454.5 323 70.3
Oeu014686.1 Olea europaea HOM05D005332 ORTHO05D006861 1.1e-125 453.8 321 69.8
Hund27309 Selenicereus undatus HOM05D005332 ORTHO05D006861 1.1e-125 453.8 314 71.0
Lj9A579T30 Lonicera japonica HOM05D005332 ORTHO05D006861 1.9e-125 453.0 315 71.7
Phvul.010G093900 Phaseolus vulgaris HOM05D005332 ORTHO05D006861 2.5e-125 452.6 318 71.4
Solyc01g094190.3 Solanum lycopersicum HOM05D005332 ORTHO05D006861 3.3e-125 452.2 317 70.7
arahy.Tifrunner.gnm1.ann1.W4LYDN Arachis hypogaea HOM05D005332 ORTHO05D006861 4.3e-125 451.8 323 70.0
Nn6g33539 Nelumbo nucifera HOM05D005332 ORTHO05D006861 7.3e-125 451.1 314 72.3
CAN.G78.17 Capsicum annuum HOM05D005332 ORTHO05D006861 1.2e-124 450.3 317 70.7
RcHm_v2.0_Chr1g0353141 Rosa chinensis HOM05D005332 ORTHO05D006861 1.2e-124 450.3 244 95.1
CsaV3_6G005760 Cucumis sativus L. HOM05D005332 ORTHO05D006861 3.6e-124 448.7 314 70.7
EL10Ac1g00521 Beta vulgaris HOM05D005332 ORTHO05D006861 6.2e-124 448.0 311 70.1
Ah.05g176380 Amaranthus hybridus HOM05D005332 ORTHO05D006861 8.0e-124 447.6 317 69.7
Aqoxy5G03955 Aquilegia oxysepala HOM05D005332 ORTHO05D006861 2.3e-123 446.0 316 69.9
Os02g0826200 Oryza sativa ssp. japonica HOM05D005332 ORTHO05D006861 3.1e-123 445.7 314 70.1
Nitab4.5_0001251g0070 Nicotiana tabacum HOM05D005332 ORTHO05D006861 4.0e-123 445.3 317 70.3
AL6G52870 Arabidopsis lyrata HOM05D005332 ORTHO05D006861 6.8e-123 444.5 316 69.3
SGA_v2.0_scaffold43G16446 Striga asiatica HOM05D005332 ORTHO05D006861 8.9e-123 444.1 326 69.0
HPP92_025722 Vanilla planifolia HOM05D005332 ORTHO05D006861 1.5e-122 443.4 312 68.9
Zm00001eb259270 Zea mays HOM05D005332 ORTHO05D006861 1.5e-122 443.4 314 71.3
ECA240G0419 Erigeron canadensis HOM05D005332 ORTHO05D006861 2.6e-122 442.6 315 69.8
TPR.G9802 Trifolium pratense HOM05D005332 ORTHO05D006861 2.6e-122 442.6 318 68.6
PSO782G1310 Papaver somniferum HOM05D005332 ORTHO05D006861 3.4e-122 442.2 315 69.8
SalBow5G4657 Salvia bowleyana HOM05D005332 ORTHO05D006861 5.8e-122 441.4 313 71.6
THA.LOC104801453 Tarenaya hassleriana HOM05D005332 ORTHO05D006861 5.8e-122 441.4 315 67.3
Sp6g00600 Schrenkiella parvula HOM05D005332 ORTHO05D006861 7.5e-122 441.0 318 69.2
MELO3C022535.2 Cucumis melo HOM05D005332 ORTHO05D006861 1.7e-121 439.9 314 69.7
VMungo0331G0206 Vigna mungo HOM05D005332 ORTHO05D006861 2.2e-121 439.5 314 69.4
HanXRQChr03g0093511 Helianthus annuus HOM05D005332 ORTHO05D006861 8.3e-121 437.6 312 69.9
ClCG06G000030 Citrullus lanatus HOM05D005332 ORTHO05D006861 1.9e-120 436.4 340 66.5
COL.COLO4_12599 Corchorus olitorius HOM05D005332 ORTHO05D006861 1.9e-120 436.4 315 72.1
A02p24170 Brassica napus HOM05D005332 ORTHO05D006861 3.2e-120 435.6 316 69.0
Lj3g0013979 Lotus japonicus HOM05D005332 ORTHO05D006861 3.2e-120 435.6 318 68.9
Medtr8g032270 Medicago truncatula HOM05D005332 ORTHO05D006861 3.2e-120 435.6 314 69.1
Thhalv10028798m.g Eutrema salsugineum HOM05D005332 ORTHO05D006861 4.1e-120 435.3 316 67.1
BraA02t07408Z Brassica rapa HOM05D005332 ORTHO05D006861 7.0e-120 434.5 316 68.7
AT4G00560 Arabidopsis thaliana HOM05D005332 ORTHO05D006861 2.7e-119 432.6 315 67.6
RcHm_v2.0_Chr1g0353331 Rosa chinensis HOM05D005332 ORTHO05D006861 2.7e-119 432.6 230 96.5
BcaC03g16043 Brassica carinata HOM05D005332 ORTHO05D006861 1.0e-118 430.6 316 68.4
Carub.0006s3668 Capsella rubella HOM05D005332 ORTHO05D006861 1.3e-118 430.3 316 68.7
Aa31LG5G430 Aethionema arabicum HOM05D005332 ORTHO05D006861 1.7e-118 429.9 315 66.0
BcaB01g02194 Brassica carinata HOM05D005332 ORTHO05D006861 2.3e-118 429.5 315 69.2
Nitab4.5_0006669g0040 Nicotiana tabacum HOM05D005332 ORTHO05D006861 3.9e-118 428.7 370 60.3
C02p38040 Brassica napus HOM05D005332 ORTHO05D006861 8.6e-118 427.6 316 67.4
Migut.O00555 Erythranthe guttata HOM05D005332 ORTHO05D006861 8.6e-118 427.6 315 68.9
AUR62004310 Chenopodium quinoa HOM05D005332 ORTHO05D006861 1.9e-117 426.4 314 65.3
PSO478G0627 Papaver somniferum HOM05D005332 ORTHO05D006861 1.6e-116 423.3 335 65.1
MBI18_g09781_MAGBIO Magnolia biondii HOM05D005332 ORTHO05D006861 2.8e-116 422.5 314 68.5
BolC2t09820H Brassica oleracea HOM05D005332 ORTHO05D006861 4.0e-115 418.7 328 64.9
Atru.chr5.441 Acer truncatum HOM05D005332 ORTHO05D006861 5.8e-114 414.8 279 73.5
Ca_18844_v3 Cicer arietinum L. HOM05D005332 ORTHO05D006861 9.8e-114 414.1 305 69.5
SalBow5G2488 Salvia bowleyana HOM05D005332 ORTHO05D006861 1.6e-111 406.8 282 72.7
RcHm_v2.0_Chr1g0353241 Rosa chinensis HOM05D005332 ORTHO05D006861 1.7e-110 403.3 241 87.6
ATR0680G024 Amborella trichopoda HOM05D005332 ORTHO05D006861 3.9e-110 402.1 314 62.4
CDE09G0818 Ceratophyllum demersum HOM05D005332 ORTHO05D006861 8.6e-110 401.0 297 68.7
DCAR_006914 Daucus carota HOM05D005332 ORTHO05D006861 4.7e-108 395.2 314 62.7
Migut.N01426 Erythranthe guttata HOM05D005332 ORTHO05D006861 1.9e-104 383.3 279 69.5
SEGI_02313 Sequoiadendron giganteum HOM05D005332 ORTHO05D006861 5.4e-104 381.7 316 62.0
PGR042G0753 Punica granatum HOM05D005332 ORTHO05D006861 1.7e-102 376.7 275 68.4
CiPaw.01G056200 Carya illinoinensis HOM05D005332 ORTHO05D006861 1.1e-101 374.0 238 78.6
RcHm_v2.0_Chr0c39g0503211 Rosa chinensis HOM05D005332 ORTHO05D006861 1.8e-99 366.7 241 81.7
RcHm_v2.0_Chr0c39g0503281 Rosa chinensis HOM05D005332 ORTHO05D006861 2.6e-98 362.8 244 82.0
CARHR248730 Cardamine hirsuta HOM05D005332 ORTHO05D006861 4.2e-96 355.5 239 72.4
Sc23g0003120 Simmondsia chinensis HOM05D005332 ORTHO05D006861 2.0e-90 336.7 232 71.1
Mapoly0113s0013 Marchantia polymorpha HOM05D005332 ORTHO05D006861 4.9e-89 332.0 311 54.7
Pp3c6_20490 Physcomitrium patens HOM05D005332 ORTHO05D006861 4.9e-89 332.0 314 52.9
Dinv43779 Davidia involucrata HOM05D005332 ORTHO05D006861 3.5e-87 325.9 203 80.3
AUR62022761 Chenopodium quinoa HOM05D005332 ORTHO05D006861 4.9e-81 305.4 232 63.4
unitig_0.g1508 Utricularia gibba HOM05D005332 ORTHO05D006861 1.2e-79 300.8 241 63.9
SMO137G0161 Selaginella moellendorffii HOM05D005332 ORTHO05D006861 4.3e-77 292.4 312 51.0
MD01G1052200 Malus domestica HOM05D005332 ORTHO05D006861 3.7e-68 262.7 180 75.6
AagrBONN_evm.TU.Sc2ySwM_117.1953 Anthoceros agrestis HOM05D005332 ORTHO05D006861 3.1e-67 259.6 303 45.5
Psat4g153040 Pisum sativum HOM05D005332 ORTHO05D006861 2.0e-66 256.9 189 66.1
MBI18_g10614_MAGBIO Magnolia biondii HOM05D005332 ORTHO05D006861 1.2e-63 247.7 191 66.0
MCO04G198 Micromonas commoda HOM05D005332 ORTHO05D006861 2.4e-51 206.8 321 41.4
PRCOL_00000453 Prasinoderma coloniale HOM05D005332 ORTHO05D006861 5.9e-50 202.2 314 41.4
Glyma.03G015066 Glycine max HOM05D005332 ORTHO05D006861 1.0e-49 201.4 131 73.3
RcHm_v2.0_Chr1g0353211 Rosa chinensis HOM05D005332 ORTHO05D006861 2.3e-46 190.3 110 89.1
MD01G1052100 Malus domestica HOM05D005332 ORTHO05D006861 2.5e-40 170.2 127 71.7
CAN.G960.12 Capsicum annuum HOM05D005332 ORTHO05D006861 6.1e-39 165.6 123 69.1
Cre17.g718250 Chlamydomonas reinhardtii HOM05D005332 ORTHO05D006861 2.3e-38 163.7 317 37.5
QL02p088489 Quercus lobata HOM05D005332 ORTHO05D006861 3.7e-36 156.4 111 70.3
QL03p011361 Quercus lobata HOM05D005332 ORTHO05D006861 3.7e-36 156.4 111 70.3
QL07p038896 Quercus lobata HOM05D005332 ORTHO05D006861 3.7e-36 156.4 111 70.3
SEGI_30707 Sequoiadendron giganteum HOM05D005332 ORTHO05D006861 5.3e-35 152.5 123 61.0
QL02p088470 Quercus lobata HOM05D005332 ORTHO05D006861 1.2e-34 151.4 105 73.3
RcHm_v2.0_Chr1g0353321 Rosa chinensis HOM05D005332 ORTHO05D006861 3.8e-33 146.4 76 90.8
RcHm_v2.0_Chr1g0353261 Rosa chinensis HOM05D005277 ORTHO05D006319 5.5e-32 142.5 84 89.3
arahy.Tifrunner.gnm1.ann1.F84KN2 Arachis hypogaea HOM05D005332 ORTHO05D006861 2.0e-26 124.0 102 60.8
arahy.Tifrunner.gnm1.ann1.FSVT9P Arachis hypogaea HOM05D005332 ORTHO05D006861 1.0e-25 121.7 90 64.4
Psat4g153000 Pisum sativum HOM05D005332 ORTHO05D006861 2.3e-25 120.6 76 81.6
RcHm_v2.0_Chr0c39g0503291 Rosa chinensis HOM05D005332 ORTHO05D006861 9.5e-24 115.2 60 91.7
RcHm_v2.0_Chr1g0353131 Rosa chinensis HOM05D005332 ORTHO05D006861 9.5e-24 115.2 60 91.7
RcHm_v2.0_Chr3g0477641 Rosa chinensis HOM05D005332 ORTHO05D006861 1.3e-20 104.8 54 94.4
Glyma.03G015132 Glycine max HOM05D005332 ORTHO05D006861 7.3e-16 89.0 84 56.0
arahy.Tifrunner.gnm1.ann1.6Z7PRK Arachis hypogaea HOM05D005332 ORTHO05D006861 2.2e-12 77.4 57 59.6
arahy.Tifrunner.gnm1.ann1.G2MMRU Arachis hypogaea HOM05D005332 ORTHO05D006861 4.0e-06 56.6 44 70.5


User provided reference genes

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