Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G1699 Fragaria x ananassa HOM05D000462 ORTHO05D005846 3.8e-75 284.6 134 100.0
FAN03G2319 Fragaria x ananassa HOM05D000462 ORTHO05D005846 2.9e-35 152.1 73 95.9
RcHm_v2.0_Chr1g0342401 Rosa chinensis HOM05D000462 ORTHO05D005846 1.2e-33 146.7 82 82.9
RcHm_v2.0_Chr1g0342491 Rosa chinensis HOM05D000462 ORTHO05D005846 4.6e-28 128.3 82 73.2
FvH4_6g35582 Fragaria vesca HOM05D000462 ORTHO05D005846 4.1e-21 105.1 79 60.8
FAN14G2914 Fragaria x ananassa HOM05D000462 ORTHO05D005846 4.1e-21 105.1 79 60.8
RcHm_v2.0_Chr2g0147411 Rosa chinensis HOM05D000462 ORTHO05D005846 1.2e-20 103.6 79 62.0
FvH4_7g07720 Fragaria vesca HOM05D000462 ORTHO05D005846 4.6e-20 101.7 71 66.2
FAN06G2574 Fragaria x ananassa HOM05D000462 ORTHO05D005846 4.6e-20 101.7 71 66.2
RcHm_v2.0_Chr2g0147401 Rosa chinensis HOM05D000462 ORTHO05D005846 1.3e-19 100.1 79 60.8
FAN10G1386 Fragaria x ananassa HOM05D000462 ORTHO05D005846 1.7e-19 99.8 71 64.8
FvH4_6g35581 Fragaria vesca HOM05D000462 ORTHO05D005846 2.3e-19 99.4 78 61.5
FAN06G0093 Fragaria x ananassa HOM05D000462 ORTHO05D005846 3.0e-19 99.0 46 93.5
FAN14G3081 Fragaria x ananassa HOM05D000462 ORTHO05D005846 1.1e-18 97.1 78 60.3
RcHm_v2.0_Chr1g0342511 Rosa chinensis HOM05D000462 ORTHO05D005846 9.5e-18 94.0 46 89.1
RcHm_v2.0_Chr1g0342371 Rosa chinensis HOM05D000462 ORTHO05D005846 1.1e-16 90.5 69 59.4
Eucgr.E01753 Eucalyptus grandis HOM05D000462 ORTHO05D005846 1.8e-16 89.7 83 59.0
MD02G1233300 Malus domestica HOM05D000462 ORTHO05D005846 1.5e-15 86.7 80 51.2
EL10Ac4g07924 Beta vulgaris HOM05D000462 ORTHO05D005846 3.4e-15 85.5 80 46.2
CiPaw.13G054400 Carya illinoinensis HOM05D000462 ORTHO05D005846 4.4e-15 85.1 77 50.6
ClCG05G011530 Citrullus lanatus HOM05D000462 ORTHO05D005846 7.6e-15 84.3 80 48.8
Sed0009318 Sechium edule HOM05D000462 ORTHO05D005846 1.3e-14 83.6 74 48.6
Sed0002685 Sechium edule HOM05D000462 ORTHO05D005846 2.2e-14 82.8 73 49.3
GSVIVG01019293001 Vitis vinifera HOM05D000462 ORTHO05D005846 2.2e-14 82.8 72 50.0
Haze_03590 Corylus avellana HOM05D000462 ORTHO05D005846 2.9e-14 82.4 79 49.4
MELO3C006216.2 Cucumis melo HOM05D000462 ORTHO05D005846 2.9e-14 82.4 71 49.3
ClCG05G002510 Citrullus lanatus HOM05D000462 ORTHO05D005846 3.7e-14 82.0 70 50.0
MD07G1080300 Malus domestica HOM05D000462 ORTHO05D005846 6.4e-14 81.3 80 48.8
Prupe.2G100300 Prunus persica HOM05D000462 ORTHO05D005846 1.1e-13 80.5 69 49.3
Rhsim07G0047200 Rhododendron simsii HOM05D000462 ORTHO05D005846 2.4e-13 79.3 116 39.7
Rhsim07G0047100 Rhododendron simsii HOM05D000462 ORTHO05D005846 5.4e-13 78.2 87 48.3
Hund26858 Selenicereus undatus HOM05D000462 ORTHO05D005846 5.4e-13 78.2 79 46.8
CSS0023532 Camellia sinensis var. sinensis HOM05D000462 ORTHO05D005846 7.1e-13 77.8 76 50.0
Dinv43525 Davidia involucrata HOM05D000462 ORTHO05D005846 7.1e-13 77.8 79 45.6
CANSAT78G2521 Cannabis sativa HOM05D000462 ORTHO05D005846 9.2e-13 77.4 82 43.9
CsaV3_3G009950 Cucumis sativus L. HOM05D000462 ORTHO05D005846 9.2e-13 77.4 71 46.5
PSO063G2746 Papaver somniferum HOM05D000462 ORTHO05D005846 1.2e-12 77.0 79 46.8
AUR62020515 Chenopodium quinoa HOM05D000462 ORTHO05D005846 2.1e-12 76.3 81 44.4
Medtr4g083390 Medicago truncatula HOM05D000462 ORTHO05D005846 2.1e-12 76.3 78 44.9
Zm00001eb421100 Zea mays HOM05D000462 ORTHO05D005846 2.1e-12 76.3 77 45.5
EL10Ac4g07923 Beta vulgaris HOM05D000462 ORTHO05D005846 2.7e-12 75.9 82 45.1
Cfa010675 Carpinus fangiana HOM05D000462 ORTHO05D005846 2.7e-12 75.9 81 44.4
PSO782G4146 Papaver somniferum HOM05D000462 ORTHO05D005846 2.7e-12 75.9 79 45.6
PSO017G2480 Papaver somniferum HOM05D000462 ORTHO05D005846 3.5e-12 75.5 79 43.0
Prupe.2G104300 Prunus persica HOM05D000462 ORTHO05D005846 6.0e-12 74.7 74 41.9
AUR62031622 Chenopodium quinoa HOM05D000462 ORTHO05D005846 1.0e-11 73.9 81 43.2
Migut.N01672 Erythranthe guttata HOM05D000462 ORTHO05D005846 1.0e-11 73.9 82 43.9
Hma1.2p1_0353F.1_g133250 Hydrangea macrophylla HOM05D000462 ORTHO05D005846 1.3e-11 73.6 77 49.4
Ca_18787_v3 Cicer arietinum L. HOM05D000462 ORTHO05D005846 2.3e-11 72.8 61 50.8
Prupe.2G104700 Prunus persica HOM05D000462 ORTHO05D005846 2.3e-11 72.8 69 44.9
CSS0030224 Camellia sinensis var. sinensis HOM05D000462 ORTHO05D005846 3.0e-11 72.4 77 42.9
CSS0047566 Camellia sinensis var. sinensis HOM05D000462 ORTHO05D005846 3.0e-11 72.4 77 42.9
Glyma.07G224100 Glycine max HOM05D000462 ORTHO05D005846 3.0e-11 72.4 64 51.6
Nitab4.5_0000050g0130 Nicotiana tabacum HOM05D000462 ORTHO05D005846 3.0e-11 72.4 74 48.6
Cc00_g12640 Coffea canephora HOM05D000462 ORTHO05D005846 3.9e-11 72.0 70 48.6
VMungo0251G1006 Vigna mungo HOM05D000462 ORTHO05D005846 3.9e-11 72.0 64 48.4
PSO478G1321 Papaver somniferum HOM05D000462 ORTHO05D005846 5.1e-11 71.6 79 43.0
Aqoxy3G00515 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 6.6e-11 71.2 65 53.8
Migut.N01673 Erythranthe guttata HOM05D000462 ORTHO05D005846 6.6e-11 71.2 65 50.8
Nitab4.5_0003123g0040 Nicotiana tabacum HOM05D000462 ORTHO05D011162 6.6e-11 71.2 61 54.1
Actinidia21593 Actinidia chinensis HOM05D000462 ORTHO05D005846 8.6e-11 70.9 76 43.4
CAN.G992.16 Capsicum annuum HOM05D000462 ORTHO05D005846 8.6e-11 70.9 81 45.7
Peaxi162Scf00907g00221 Petunia axillaris HOM05D000462 ORTHO05D005846 8.6e-11 70.9 81 43.2
Solyc07g017470.3 Solanum lycopersicum HOM05D000462 ORTHO05D005846 1.1e-10 70.5 80 45.0
Nitab4.5_0000792g0060 Nicotiana tabacum HOM05D000462 ORTHO05D005846 1.5e-10 70.1 82 45.1
Phvul.002G100800 Phaseolus vulgaris HOM05D000462 ORTHO05D005846 1.5e-10 70.1 64 45.3
Aqoxy3G02219 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 1.9e-10 69.7 80 45.0
Lalb_Chr09g0328911 Lupinus albus HOM05D000462 ORTHO05D005846 1.9e-10 69.7 77 45.5
Nn1g09754 Nelumbo nucifera HOM05D000462 ORTHO05D005846 1.9e-10 69.7 103 34.0
Nn3g19412 Nelumbo nucifera HOM05D000462 ORTHO05D005846 2.5e-10 69.3 78 41.0
Nn3g19417 Nelumbo nucifera HOM05D000462 ORTHO05D005846 2.5e-10 69.3 78 41.0
Migut.N01674 Erythranthe guttata HOM05D000462 ORTHO05D005846 3.3e-10 68.9 68 52.9
Atru.chr2.1657 Acer truncatum HOM05D000462 ORTHO05D005846 5.6e-10 68.2 77 40.3
CAN.G992.17 Capsicum annuum HOM05D000462 ORTHO05D005846 5.6e-10 68.2 81 40.7
Solyc01g150140.1 Solanum lycopersicum HOM05D000462 ORTHO05D005846 7.3e-10 67.8 81 45.7
PGSC0003DMG400001798 Solanum tuberosum HOM05D000462 ORTHO05D005846 7.3e-10 67.8 65 49.2
PGSC0003DMG400020979 Solanum tuberosum HOM05D000462 ORTHO05D005846 7.3e-10 67.8 65 49.2
PGSC0003DMG400042622 Solanum tuberosum HOM05D000462 ORTHO05D005846 7.3e-10 67.8 81 42.0
Peaxi162Scf00907g00226 Petunia axillaris HOM05D000462 ORTHO05D005846 9.6e-10 67.4 80 41.2
arahy.Tifrunner.gnm1.ann1.AX2FME Arachis hypogaea HOM05D000462 ORTHO05D005846 1.2e-09 67.0 81 39.5
arahy.Tifrunner.gnm1.ann1.L6NMZX Arachis hypogaea HOM05D000462 ORTHO05D005846 1.2e-09 67.0 81 39.5
MSTRG.17069 Avicennia marina HOM05D000462 ORTHO05D005846 1.2e-09 67.0 78 41.0
Psat7g132920 Pisum sativum HOM05D000462 ORTHO05D005846 1.2e-09 67.0 57 49.1
TPR.G34026 Trifolium pratense HOM05D000462 ORTHO05D005846 1.2e-09 67.0 60 50.0
Nitab4.5_0006461g0020 Nicotiana tabacum HOM05D000462 ORTHO05D005846 1.6e-09 66.6 82 45.1
HanXRQChr01g0021801 Helianthus annuus HOM05D000462 ORTHO05D005846 2.1e-09 66.2 80 41.2
Lsat_1_v5_gn_5_59060 Lactuca sativa HOM05D000462 ORTHO05D005846 2.1e-09 66.2 78 43.6
Peaxi162Scf00245g00411 Petunia axillaris HOM05D000462 ORTHO05D005846 2.8e-09 65.9 71 45.1
AUR62020518 Chenopodium quinoa HOM05D000462 ORTHO05D005846 3.6e-09 65.5 80 43.8
Lsat_1_v5_gn_7_33120 Lactuca sativa HOM05D000462 ORTHO05D005846 3.6e-09 65.5 78 42.3
Solyc01g081400.3 Solanum lycopersicum HOM05D000462 ORTHO05D005846 4.7e-09 65.1 69 46.4
Sopen01g026530 Solanum pennellii HOM05D000462 ORTHO05D005846 4.7e-09 65.1 66 47.0
Sopen01g032970 Solanum pennellii HOM05D000462 ORTHO05D005846 4.7e-09 65.1 69 46.4
Cpa.g.sc73.65 Carica papaya HOM05D000462 ORTHO05D005846 6.2e-09 64.7 64 51.6
ECA240G2690 Erigeron canadensis HOM05D000462 ORTHO05D005846 6.2e-09 64.7 80 42.5
HPP92_014959 Vanilla planifolia HOM05D000462 ORTHO05D005846 6.2e-09 64.7 79 41.8
Aqoxy7G00268 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 8.1e-09 64.3 75 38.7
arahy.Tifrunner.gnm1.ann1.ES60GW Arachis hypogaea HOM05D000462 ORTHO05D005846 8.1e-09 64.3 70 40.0
DCAR_029565 Daucus carota HOM05D000462 ORTHO05D005846 8.1e-09 64.3 81 44.4
ECA236G1772 Erigeron canadensis HOM05D000462 ORTHO05D005846 8.1e-09 64.3 77 40.3
PGR042G2077 Punica granatum HOM05D000462 ORTHO05D005846 8.1e-09 64.3 69 49.3
Os04g0386900 Oryza sativa ssp. japonica HOM05D000462 ORTHO05D005846 1.1e-08 63.9 80 38.8
Aqoxy2G03796 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 1.4e-08 63.5 80 41.2
AUR62015684 Chenopodium quinoa HOM05D000462 ORTHO05D005846 1.4e-08 63.5 80 42.5
unitig_26.g8840 Utricularia gibba HOM05D000462 ORTHO05D005846 1.4e-08 63.5 75 40.0
vmacro13593 Vaccinium macrocarpon HOM05D000462 ORTHO05D005846 1.4e-08 63.5 59 49.2
AUR62031619 Chenopodium quinoa HOM05D000462 ORTHO05D005846 1.8e-08 63.2 80 42.5
TAR374G1078 Trochodendron aralioides HOM05D000462 ORTHO05D005846 1.8e-08 63.2 79 41.8
arahy.Tifrunner.gnm1.ann1.XCU387 Arachis hypogaea HOM05D000462 ORTHO05D005846 2.4e-08 62.8 70 38.6
arahy.Tifrunner.gnm1.ann1.62DZ2D Arachis hypogaea HOM05D000462 ORTHO05D005846 6.8e-08 61.2 62 43.5
unitig_749.g14241 Utricularia gibba HOM05D000462 ORTHO05D005846 6.8e-08 61.2 102 32.4
Ciclev10033936m.g Citrus clementina HOM05D000462 ORTHO05D005846 8.9e-08 60.8 73 43.8
Cc08_g05580 Coffea canephora HOM05D000462 ORTHO05D005846 8.9e-08 60.8 58 48.3
Os06g0112300 Oryza sativa ssp. japonica HOM05D000462 ORTHO05D005846 1.2e-07 60.5 80 38.8
unitig_750.g28427 Utricularia gibba HOM05D000462 ORTHO05D005846 1.5e-07 60.1 78 41.0
CAN.G206.135 Capsicum annuum HOM05D000462 ORTHO05D005846 2.6e-07 59.3 83 34.9
DCAR_029563 Daucus carota HOM05D000462 ORTHO05D005846 3.4e-07 58.9 59 47.5
HanXRQChr13g0411631 Helianthus annuus HOM05D000462 ORTHO05D005846 4.4e-07 58.5 84 34.5
Cc08_g05560 Coffea canephora HOM05D000462 ORTHO05D005846 5.8e-07 58.2 58 50.0
Oeu013594.1 Olea europaea HOM05D000462 ORTHO05D005846 5.8e-07 58.2 65 46.2
Oeu039097.1 Olea europaea HOM05D000462 ORTHO05D005846 5.8e-07 58.2 65 46.2
Cc08_g05570 Coffea canephora HOM05D000462 ORTHO05D005846 7.6e-07 57.8 59 49.2
SalBow4G1864 Salvia bowleyana HOM05D000462 ORTHO05D005846 9.9e-07 57.4 107 29.9
SalBow4G3150 Salvia bowleyana HOM05D000462 ORTHO05D005846 9.9e-07 57.4 107 29.9
DCAR_029566 Daucus carota HOM05D000462 ORTHO05D005846 2.9e-06 55.8 60 45.0
SalBow4G0191 Salvia bowleyana HOM05D009568 ORTHO05D011026 8.4e-06 54.3 76 42.1
SalBow4G0706 Salvia bowleyana HOM05D009568 ORTHO05D011026 8.4e-06 54.3 74 43.2


User provided reference genes

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