Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G1690 Fragaria x ananassa HOM05D004001 ORTHO05D004559 0.0e+00 1545.4 893 100.0
FAN10G1409 Fragaria x ananassa HOM05D004001 ORTHO05D004559 0.0e+00 1478.4 846 98.9
FAN06G2206 Fragaria x ananassa HOM05D004001 ORTHO05D004559 0.0e+00 1441.4 831 98.7
FAN06G4715 Fragaria x ananassa HOM05D004001 ORTHO05D004559 0.0e+00 1426.8 823 98.7
FvH4_7g12090 Fragaria vesca HOM05D004001 ORTHO05D004559 0.0e+00 1425.6 823 98.7
FAN03G0266 Fragaria x ananassa HOM05D004001 ORTHO05D004559 0.0e+00 1325.5 841 91.2
RcHm_v2.0_Chr1g0350831 Rosa chinensis HOM05D004001 ORTHO05D004559 0.0e+00 1263.4 843 86.2
MD02G1201400 Malus domestica HOM05D004001 ORTHO05D004559 6.8e-261 904.4 871 62.1
Dinv32391 Davidia involucrata HOM05D004001 ORTHO05D004559 2.6e-252 875.9 876 61.2
Atru.chr5.325 Acer truncatum HOM05D004001 ORTHO05D004559 9.2e-242 840.9 860 58.8
Actinidia12272 Actinidia chinensis HOM05D004001 ORTHO05D004559 4.6e-241 838.6 877 57.9
Actinidia31422 Actinidia chinensis HOM05D004001 ORTHO05D004559 5.6e-239 831.6 877 57.1
Prupe.2G147400 Prunus persica HOM05D004001 ORTHO05D004559 6.2e-238 828.2 748 65.1
QL08p051978 Quercus lobata HOM05D004001 ORTHO05D004559 1.7e-232 810.1 879 60.0
Thecc.01G374400 Theobroma cacao HOM05D004001 ORTHO05D004559 6.2e-230 801.6 862 57.7
arahy.Tifrunner.gnm1.ann1.0Y1PWL Arachis hypogaea HOM05D004001 ORTHO05D004559 2.3e-229 799.7 853 56.5
TAR629G2254 Trochodendron aralioides HOM05D004001 ORTHO05D004559 4.0e-229 798.9 885 56.4
CANSAT56G0321 Cannabis sativa HOM05D004001 ORTHO05D004559 4.4e-228 795.4 860 58.5
Duzib138G1007 Durio zibethinus HOM05D004001 ORTHO05D004559 7.8e-225 784.6 853 59.1
CiPaw.01G260600 Carya illinoinensis HOM05D004001 ORTHO05D004559 1.0e-224 784.3 836 57.9
Haze_16831 Corylus avellana HOM05D004001 ORTHO05D004559 3.3e-223 779.2 890 54.4
Rhsim07G0025900 Rhododendron simsii HOM05D004001 ORTHO05D004559 2.4e-221 773.1 790 59.6
TAR636G3381 Trochodendron aralioides HOM05D004001 ORTHO05D004559 2.0e-220 770.0 871 55.3
Potri.014G071400 Populus trichocarpa HOM05D004001 ORTHO05D004559 3.4e-220 769.2 866 55.7
Rhsim07G0026000 Rhododendron simsii HOM05D004001 ORTHO05D004559 9.9e-220 767.7 885 54.6
Gorai.007G092200 Gossypium raimondii HOM05D004001 ORTHO05D004559 6.0e-217 758.4 856 57.0
TWI14G1161 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 1.0e-216 757.7 875 54.9
Lalb_Chr07g0189651 Lupinus albus HOM05D004001 ORTHO05D004559 3.9e-216 755.7 847 55.0
Nitab4.5_0010473g0020 Nicotiana tabacum HOM05D004001 ORTHO05D004559 4.8e-214 748.8 856 55.0
Cfa001702 Carpinus fangiana HOM05D004001 ORTHO05D004559 4.4e-212 742.3 875 53.8
Sopen01g037250 Solanum pennellii HOM05D004001 ORTHO05D004559 4.4e-212 742.3 869 55.2
Manes.05G044000 Manihot esculenta HOM05D004001 ORTHO05D004559 5.8e-212 741.9 817 55.9
Solyc01g091500.3 Solanum lycopersicum HOM05D004001 ORTHO05D004559 5.8e-212 741.9 854 55.9
Glyma.18G221900 Glycine max HOM05D004001 ORTHO05D004559 8.4e-211 738.0 844 54.7
Eucgr.E01409 Eucalyptus grandis HOM05D004001 ORTHO05D004559 3.2e-210 736.1 840 54.6
Gohir.D11G086300 Gossypium hirsutum HOM05D004001 ORTHO05D004559 4.6e-209 732.3 856 54.8
arahy.Tifrunner.gnm1.ann1.CI1NNE Arachis hypogaea HOM05D004001 ORTHO05D004559 1.7e-208 730.3 853 52.8
PGSC0003DMG400012752 Solanum tuberosum HOM05D004001 ORTHO05D004559 3.9e-208 729.2 874 54.1
Gorai.008G114700 Gossypium raimondii HOM05D004001 ORTHO05D004559 5.1e-208 728.8 868 54.6
GSVIVG01027630001 Vitis vinifera HOM05D004001 ORTHO05D004559 2.8e-206 723.0 835 54.5
arahy.Tifrunner.gnm1.ann1.2UV9R4 Arachis hypogaea HOM05D004001 ORTHO05D004559 4.8e-206 722.2 853 52.5
Sabra14G0050700 Salix brachista HOM05D004001 ORTHO05D004559 1.1e-205 721.1 860 54.8
MSTRG.20759 Avicennia marina HOM05D004001 ORTHO05D004559 7.6e-204 714.9 895 51.6
CsaV3_3G009550 Cucumis sativus L. HOM05D004001 ORTHO05D004559 9.9e-204 714.5 853 51.8
SalBow5G4135 Salvia bowleyana HOM05D004001 ORTHO05D004559 1.7e-203 713.8 852 54.0
Lalb_Chr12g0208391 Lupinus albus HOM05D004001 ORTHO05D004559 2.2e-203 713.4 851 53.1
Lalb_Chr12g0208441 Lupinus albus HOM05D004001 ORTHO05D004559 2.2e-203 713.4 851 53.1
Nitab4.5_0004320g0020 Nicotiana tabacum HOM05D004001 ORTHO05D004559 6.4e-203 711.8 884 52.6
CAN.G170.4 Capsicum annuum HOM05D004001 ORTHO05D004559 1.9e-199 700.3 879 52.1
Lj1g0027935 Lotus japonicus HOM05D004001 ORTHO05D004559 1.9e-199 700.3 866 52.0
arahy.Tifrunner.gnm1.ann1.H5PXMS Arachis hypogaea HOM05D004001 ORTHO05D004559 1.6e-198 697.2 851 51.5
Glyma.09G268000 Glycine max HOM05D004001 ORTHO05D004559 5.3e-197 692.2 845 52.2
arahy.Tifrunner.gnm1.ann1.9J1L2I Arachis hypogaea HOM05D004001 ORTHO05D004559 2.0e-196 690.3 887 51.4
Lj9C572T3 Lonicera japonica HOM05D004001 ORTHO05D004559 2.6e-196 689.9 859 52.2
arahy.Tifrunner.gnm1.ann1.EYC1DY Arachis hypogaea HOM05D004001 ORTHO05D004559 7.6e-196 688.3 887 51.9
Ciclev10018784m.g Citrus clementina HOM05D004001 ORTHO05D004559 1.3e-195 687.6 845 52.3
PSO478G3708 Papaver somniferum HOM05D004001 ORTHO05D004559 1.7e-195 687.2 888 49.5
Cc02_g36540 Coffea canephora HOM05D004001 ORTHO05D004559 1.4e-194 684.1 867 53.9
ClCG05G002120 Citrullus lanatus HOM05D004001 ORTHO05D004559 7.9e-193 678.3 945 47.6
Sc26g0001190 Simmondsia chinensis HOM05D004001 ORTHO05D004559 3.0e-192 676.4 902 49.8
vmacro13388 Vaccinium macrocarpon HOM05D004001 ORTHO05D004559 3.3e-191 672.9 722 58.9
COL.COLO4_12572 Corchorus olitorius HOM05D004001 ORTHO05D004559 3.7e-190 669.5 797 52.8
PSO782G3046 Papaver somniferum HOM05D004001 ORTHO05D004559 1.0e-187 661.4 885 48.1
Gohir.D12G105400 Gossypium hirsutum HOM05D004001 ORTHO05D004559 1.7e-187 660.6 866 50.2
arahy.Tifrunner.gnm1.ann1.JKPH3R Arachis hypogaea HOM05D004001 ORTHO05D004559 5.0e-187 659.1 797 53.1
Ca_07831_v3 Cicer arietinum L. HOM05D004001 ORTHO05D004559 5.0e-187 659.1 857 50.8
Lj7C526G13 Lonicera japonica HOM05D004001 ORTHO05D004559 1.3e-184 651.0 851 50.6
EL10Ac1g00911 Beta vulgaris HOM05D004001 ORTHO05D004559 1.8e-184 650.6 890 47.9
Medtr7g075140 Medicago truncatula HOM05D004001 ORTHO05D004559 1.9e-183 647.1 851 50.5
Phvul.008G075200 Phaseolus vulgaris HOM05D004001 ORTHO05D004559 1.3e-182 644.4 845 50.7
Nn4g26437 Nelumbo nucifera HOM05D004001 ORTHO05D004559 1.6e-182 644.0 886 49.2
Aqoxy7G00586 Aquilegia oxysepala HOM05D004001 ORTHO05D004559 2.8e-182 643.3 863 48.0
Oeu037907.1 Olea europaea HOM05D004001 ORTHO05D004559 4.8e-182 642.5 842 50.4
AUR62013619 Chenopodium quinoa HOM05D004001 ORTHO05D004559 2.9e-179 633.3 842 48.5
Peaxi162Scf00021g01316 Petunia axillaris HOM05D004001 ORTHO05D004559 5.5e-178 629.0 865 48.8
Psat3g115320 Pisum sativum HOM05D004001 ORTHO05D004559 6.1e-177 625.5 859 48.5
Hund17008 Selenicereus undatus HOM05D004001 ORTHO05D004559 7.9e-177 625.2 952 45.1
Migut.B01647 Erythranthe guttata HOM05D004001 ORTHO05D004559 1.5e-175 620.9 847 48.5
Gohir.A12G102200 Gossypium hirsutum HOM05D004001 ORTHO05D004559 1.5e-175 620.9 889 47.7
unitig_8.g3817 Utricularia gibba HOM05D004001 ORTHO05D004559 7.4e-175 618.6 852 47.7
HanXRQChr03g0093811 Helianthus annuus HOM05D004001 ORTHO05D004559 3.7e-174 616.3 821 49.1
BcaB02g08998 Brassica carinata HOM05D004001 ORTHO05D004559 6.5e-171 605.5 835 46.7
AUR62004229 Chenopodium quinoa HOM05D004001 ORTHO05D004559 9.4e-170 601.7 879 46.3
SGA_v2.0_scaffold95G28893 Striga asiatica HOM05D004001 ORTHO05D004559 3.9e-168 596.3 845 46.2
PGR042G2753 Punica granatum HOM05D004001 ORTHO05D004559 2.6e-164 583.6 875 46.1
AL4G44630 Arabidopsis lyrata HOM05D004001 ORTHO05D004559 7.7e-164 582.0 851 45.6
CARHR140650 Cardamine hirsuta HOM05D004001 ORTHO05D004559 2.9e-163 580.1 842 45.8
AT2G45460 Arabidopsis thaliana HOM05D004001 ORTHO05D004559 2.7e-161 573.5 846 45.4
Sp4g27490 Schrenkiella parvula HOM05D004001 ORTHO05D004559 6.7e-160 568.9 863 44.4
Sed0014964 Sechium edule HOM05D004001 ORTHO05D004559 5.7e-159 565.8 752 49.5
CDE04G0282 Ceratophyllum demersum HOM05D004001 ORTHO05D004559 1.4e-157 561.2 853 44.5
ECA240G2591 Erigeron canadensis HOM05D004001 ORTHO05D004559 5.3e-157 559.3 841 46.6
SGA_v2.0_scaffold153G37027 Striga asiatica HOM05D004001 ORTHO05D001724 2.0e-156 557.4 879 45.8
Lsat_1_v5_gn_3_133301 Lactuca sativa HOM05D004001 ORTHO05D004559 4.5e-156 556.2 821 46.2
Aa31LG1G26960 Aethionema arabicum HOM05D004001 ORTHO05D004559 7.7e-156 555.4 845 43.8
BolC4t22266H Brassica oleracea HOM05D004001 ORTHO05D004559 1.0e-155 555.1 854 44.6
BraA05t19519Z Brassica rapa HOM05D004001 ORTHO05D004559 8.5e-155 552.0 852 44.1
C04p06430 Brassica napus HOM05D004001 ORTHO05D004559 4.2e-154 549.7 839 44.5
BcaC02g12205 Brassica carinata HOM05D004001 ORTHO05D004559 4.7e-153 546.2 839 44.2
A05p05490 Brassica napus HOM05D004001 ORTHO05D004559 1.8e-152 544.3 839 44.0
CSS0038978 Camellia sinensis var. sinensis HOM05D004001 ORTHO05D004559 2.3e-152 543.9 458 65.3
MELO3C006177.2 Cucumis melo HOM05D004001 ORTHO05D004559 1.3e-150 538.1 853 44.7
Os03g0127600 Oryza sativa ssp. japonica HOM05D004001 ORTHO05D004559 1.8e-149 534.3 864 41.4
Carub.0004s2807 Capsella rubella HOM05D004001 ORTHO05D004559 2.7e-148 530.4 870 42.1
Thhalv10001303m.g Eutrema salsugineum HOM05D004001 ORTHO05D004559 2.2e-147 527.3 870 42.4
TPR.G26922 Trifolium pratense HOM05D004001 ORTHO05D004559 7.2e-138 495.7 811 42.8
MBI11_g23939_MAGBIO Magnolia biondii HOM05D004001 ORTHO05D004559 1.0e-136 491.9 713 46.6
Zm00001eb403560 Zea mays HOM05D004001 ORTHO05D004559 1.1e-133 481.9 885 39.5
Ah.16g103740 Amaranthus hybridus HOM05D004001 ORTHO05D004559 1.1e-130 471.9 866 42.7
SHI13515 Sapria himalayana HOM05D004001 ORTHO05D004559 1.9e-130 471.1 495 53.9
Gohir.A11G081700 Gossypium hirsutum HOM05D004001 ORTHO05D004559 1.6e-129 468.0 856 42.3
ATR0757G164 Amborella trichopoda HOM05D004001 ORTHO05D004559 3.5e-116 423.7 899 37.8
Zm00001eb002020 Zea mays HOM05D004001 ORTHO05D004559 1.3e-110 405.2 811 36.3
SEGI_05063 Sequoiadendron giganteum HOM05D004001 ORTHO05D004559 4.9e-102 376.7 590 42.7
unitig_31.g34038 Utricularia gibba HOM05D004001 ORTHO05D004559 2.2e-94 351.3 559 43.1
DCAR_006877 Daucus carota HOM05D004001 ORTHO05D004559 7.9e-92 342.8 445 48.5
HPP92_018394 Vanilla planifolia HOM05D004001 ORTHO05D004559 5.1e-91 340.1 634 39.0
arahy.Tifrunner.gnm1.ann1.RB3Z54 Arachis hypogaea HOM05D004001 ORTHO05D004559 1.8e-88 331.6 533 43.5
arahy.Tifrunner.gnm1.ann1.5M5P73 Arachis hypogaea HOM05D004001 ORTHO05D004559 4.6e-84 317.0 422 47.6
AagrBONN_evm.TU.Sc2ySwM_362.1643 Anthoceros agrestis HOM05D004001 ORTHO05D004559 6.9e-80 303.1 612 35.3
SalBow3G1117 Salvia bowleyana HOM05D004001 ORTHO05D004559 2.2e-70 271.6 241 61.0
CSS0022656 Camellia sinensis var. sinensis HOM05D004001 ORTHO05D004559 9.3e-69 266.2 423 47.0
DCAR_006876 Daucus carota HOM05D004001 ORTHO05D004559 2.6e-63 248.1 393 45.5
VMungo1383G1498 Vigna mungo HOM05D004001 ORTHO05D004559 1.7e-62 245.4 373 49.3
Mapoly0005s0201 Marchantia polymorpha HOM05D004001 ORTHO05D004559 4.2e-61 240.7 613 32.5
Actinidia33460 Actinidia chinensis HOM05D004001 ORTHO05D004559 5.3e-56 223.8 182 65.9
Oeu005774.1 Olea europaea HOM05D004001 ORTHO05D004559 8.2e-49 199.9 214 54.2
Pp3c5_28010 Physcomitrium patens HOM05D004001 ORTHO05D004559 4.5e-47 194.1 653 28.5
vmacro13387 Vaccinium macrocarpon HOM05D004001 ORTHO05D004559 2.5e-45 188.3 181 56.9
VMungo1383G3044 Vigna mungo HOM05D004001 ORTHO05D004559 5.3e-40 170.6 161 55.9
SEGI_21780 Sequoiadendron giganteum HOM05D004001 ORTHO05D004559 7.7e-39 166.8 281 43.1
arahy.Tifrunner.gnm1.ann1.K6PBMX Arachis hypogaea HOM05D004001 ORTHO05D004559 3.8e-38 164.5 170 58.8
arahy.Tifrunner.gnm1.ann1.LXQN6Z Arachis hypogaea HOM05D004001 ORTHO05D004559 5.5e-37 160.6 275 43.6
Cpa.g.sc18.133 Carica papaya HOM05D004001 ORTHO05D004559 6.8e-35 153.7 292 40.8
arahy.Tifrunner.gnm1.ann1.Q8AXKZ Arachis hypogaea HOM05D005562 ORTHO05D007785 4.8e-33 147.5 176 52.3
CBR_g40168 Chara braunii HOM05D004001 ORTHO05D004559 7.0e-32 143.7 610 24.3
arahy.Tifrunner.gnm1.ann1.DK59KL Arachis hypogaea HOM05D004001 ORTHO05D004559 3.5e-31 141.4 156 56.4
Mapoly0048s0074 Marchantia polymorpha HOM05D004001 ORTHO05D004559 1.7e-30 139.0 235 37.4
arahy.Tifrunner.gnm1.ann1.FJEF2G Arachis hypogaea HOM05D004001 ORTHO05D004559 8.8e-27 126.7 179 48.6
arahy.Tifrunner.gnm1.ann1.7YWS89 Arachis hypogaea HOM05D004001 ORTHO05D004559 4.4e-26 124.4 310 36.5
arahy.Tifrunner.gnm1.ann1.2V3ERI Arachis hypogaea HOM05D004001 ORTHO05D004559 6.3e-25 120.6 256 39.1
Hma1.2p1_1793F.1_g302640 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 7.0e-24 117.1 103 60.2
Hma1.2p1_1793F.1_g302630 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 1.6e-23 115.9 99 58.6
Hma1.2p1_3528F.1_g336625 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 1.6e-23 115.9 99 58.6
arahy.Tifrunner.gnm1.ann1.63QVJR Arachis hypogaea HOM05D004001 ORTHO05D004559 5.0e-22 110.9 256 38.3
EL10Ac2g04735 Beta vulgaris HOM05D002948 ORTHO05D003577 1.3e-14 86.3 118 42.4
TWI56G0444 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 1.2e-12 79.7 155 36.1
arahy.Tifrunner.gnm1.ann1.73J9IG Arachis hypogaea HOM05D004001 ORTHO05D004559 1.6e-12 79.3 92 54.3
Rhsim07G0026800 Rhododendron simsii HOM05D004001 ORTHO05D004559 1.6e-12 79.3 259 35.9
TWI56G0254 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 3.6e-12 78.2 143 39.9
TWI56G1263 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 3.6e-12 78.2 143 39.9
TWI56G0921 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 1.0e-11 76.6 142 40.1
TWI56G1146 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 1.0e-11 76.6 142 40.1
TWI56G1317 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 1.0e-11 76.6 142 40.1
vmacro22718 Vaccinium macrocarpon HOM05D004001 ORTHO05D004559 1.0e-11 76.6 65 66.2
SMO147G0240 Selaginella moellendorffii HOM05D004001 ORTHO05D004559 3.1e-11 75.1 314 27.4
arahy.Tifrunner.gnm1.ann1.YQ72RL Arachis hypogaea HOM05D004001 ORTHO05D004559 1.2e-10 73.2 179 38.0
Psat6g122920 Pisum sativum HOM05D004001 ORTHO05D004559 1.5e-10 72.8 40 85.0
Dinv00153 Davidia involucrata HOM05D004001 ORTHO05D004559 2.0e-10 72.4 57 63.2
Dinv00152 Davidia involucrata HOM05D026811 ORTHO05D004559 2.6e-10 72.0 56 64.3
arahy.Tifrunner.gnm1.ann1.8X1DD2 Arachis hypogaea HOM05D004001 ORTHO05D004559 4.4e-10 71.2 96 45.8
Dinv00151 Davidia involucrata HOM05D026811 ORTHO05D004559 9.8e-10 70.1 75 50.7
Cpa.g.sc18.136 Carica papaya HOM05D004001 ORTHO05D004559 1.2e-07 63.2 68 54.4
arahy.Tifrunner.gnm1.ann1.8SNI53 Arachis hypogaea HOM05D004001 ORTHO05D004559 1.6e-07 62.8 41 75.6
arahy.Tifrunner.gnm1.ann1.GD98VG Arachis hypogaea HOM05D004001 ORTHO05D004559 6.0e-07 60.8 57 61.4
BcaC07g37285 Brassica carinata HOM05D025803 ORTHO05D027242 1.0e-06 60.1 49 65.3
Hma1.2p1_3528F.1_g336630 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 3.9e-06 58.2 53 56.6


User provided reference genes

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