Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G1674 Fragaria x ananassa HOM05D000127 ORTHO05D000243 1.4e-30 135.6 68 100.0
FvH4_7g25310 Fragaria vesca HOM05D000127 ORTHO05D000243 2.1e-21 105.1 65 76.9
MD01G1158700 Malus domestica HOM05D000127 ORTHO05D000243 2.7e-21 104.8 65 76.9
FAN01G1041 Fragaria x ananassa HOM05D000127 ORTHO05D000243 8.0e-21 103.2 64 76.6
FAN06G1987 Fragaria x ananassa HOM05D000127 ORTHO05D000243 1.4e-20 102.4 65 75.4
Prupe.2G257300 Prunus persica HOM05D000127 ORTHO05D000243 4.0e-20 100.9 65 75.4
RcHm_v2.0_Chr1g0371211 Rosa chinensis HOM05D000127 ORTHO05D000243 5.2e-20 100.5 66 74.2
Prupe.2G257000 Prunus persica HOM05D000127 ORTHO05D000243 1.5e-19 99.0 64 71.9
FvH4_7g25300 Fragaria vesca HOM05D000127 ORTHO05D000243 1.3e-18 95.9 65 69.2
RcHm_v2.0_Chr1g0371201 Rosa chinensis HOM05D000127 ORTHO05D000243 1.3e-18 95.9 65 72.3
MD01G1158800 Malus domestica HOM05D000127 ORTHO05D000243 1.7e-18 95.5 65 70.8
FAN25G2219 Fragaria x ananassa HOM05D000127 ORTHO05D000243 2.2e-18 95.1 66 69.7
MD07G1227200 Malus domestica HOM05D000127 ORTHO05D000243 2.2e-18 95.1 64 70.3
Prupe.2G257100 Prunus persica HOM05D000127 ORTHO05D000243 2.8e-18 94.7 65 66.2
FvH4_3g43690 Fragaria vesca HOM05D000127 ORTHO05D000243 3.7e-18 94.4 66 69.7
FvH4_7g25290 Fragaria vesca HOM05D000127 ORTHO05D000243 1.1e-17 92.8 64 71.9
FAN11G0483 Fragaria x ananassa HOM05D000259 ORTHO05D000155 1.1e-17 92.8 66 68.2
FAN21G0764 Fragaria x ananassa HOM05D000127 ORTHO05D000243 1.1e-17 92.8 66 68.2
RcHm_v2.0_Chr1g0371191 Rosa chinensis HOM05D000127 ORTHO05D000243 1.8e-17 92.0 65 69.2
Prupe.2G257200 Prunus persica HOM05D000127 ORTHO05D000243 2.4e-17 91.7 59 71.2
FvH4_7g25250 Fragaria vesca HOM05D000127 ORTHO05D000243 7.0e-17 90.1 63 71.4
FvH4_7g25211 Fragaria vesca HOM05D000127 ORTHO05D000243 1.2e-16 89.4 64 68.8
FAN03G1868 Fragaria x ananassa HOM05D000127 ORTHO05D000243 2.7e-16 88.2 63 69.8
MD07G1227600 Malus domestica HOM05D000127 ORTHO05D000243 2.7e-16 88.2 65 63.1
CANSAT56G2917 Cannabis sativa HOM05D000127 ORTHO05D000243 7.2e-14 80.1 67 61.2
Ca_15162_v3 Cicer arietinum L. HOM05D000127 ORTHO05D000243 8.0e-13 76.6 63 61.9
Lalb_Chr23g0277121 Lupinus albus HOM05D000127 ORTHO05D000243 3.0e-12 74.7 63 60.3
Psat5g145040 Pisum sativum HOM05D000127 ORTHO05D000243 3.0e-12 74.7 63 60.3
Psat5g145080 Pisum sativum HOM05D000127 ORTHO05D000243 4.0e-12 74.3 63 60.3
FAN01G0519 Fragaria x ananassa HOM05D000127 ORTHO05D000243 6.8e-12 73.6 39 92.3
Medtr3g071870 Medicago truncatula HOM05D000127 ORTHO05D000243 6.8e-12 73.6 67 56.7
Glyma.18G023800 Glycine max HOM05D000127 ORTHO05D000243 8.8e-12 73.2 63 57.1
Lalb_Chr08g0231471 Lupinus albus HOM05D000127 ORTHO05D000243 1.5e-11 72.4 63 57.1
Phvul.001G246500 Phaseolus vulgaris HOM05D000127 ORTHO05D000243 1.5e-11 72.4 63 55.6
TPR.G30913 Trifolium pratense HOM05D000127 ORTHO05D000243 2.0e-11 72.0 67 55.2
Lalb_Chr08g0231451 Lupinus albus HOM05D000127 ORTHO05D000243 3.4e-11 71.2 69 55.1
Phvul.001G246600 Phaseolus vulgaris HOM05D000127 ORTHO05D000243 5.7e-11 70.5 63 57.1
arahy.Tifrunner.gnm1.ann1.FS0925 Arachis hypogaea HOM05D000127 ORTHO05D000243 7.5e-11 70.1 64 57.8
TWI09G1427 Tripterygium wilfordii HOM05D000127 ORTHO05D000243 1.3e-10 69.3 63 52.4
arahy.Tifrunner.gnm1.ann1.1X6UIC Arachis hypogaea HOM05D000127 ORTHO05D000243 2.2e-10 68.6 64 56.2
Lj6g0026329 Lotus japonicus HOM05D000127 ORTHO05D000243 2.8e-10 68.2 64 57.8
Psat5g145120 Pisum sativum HOM05D000127 ORTHO05D000243 1.1e-09 66.2 64 59.4
PGR102G2448 Punica granatum HOM05D000127 ORTHO05D000243 1.4e-09 65.9 60 55.0
VMungo1383G2758 Vigna mungo HOM05D000127 ORTHO05D000243 1.4e-09 65.9 63 49.2
VMungo1383G3488 Vigna mungo HOM05D000127 ORTHO05D000243 1.4e-09 65.9 63 49.2
Glyma.18G023700 Glycine max HOM05D000127 ORTHO05D000243 1.8e-09 65.5 63 52.4
Atru.chr12.110 Acer truncatum HOM05D000127 ORTHO05D000243 2.4e-09 65.1 61 49.2
Atru.chr12.163 Acer truncatum HOM05D000127 ORTHO05D000243 3.1e-09 64.7 62 53.2
Ciclev10030754m.g Citrus clementina HOM05D000127 ORTHO05D000243 4.1e-09 64.3 68 50.0
Lj6g0000359 Lotus japonicus HOM05D000127 ORTHO05D000243 7.0e-09 63.5 61 54.1
Ciclev10033586m.g Citrus clementina HOM05D000127 ORTHO05D000243 9.1e-09 63.2 62 51.6
Ciclev10033439m.g Citrus clementina HOM05D000127 ORTHO05D000243 1.2e-08 62.8 62 50.0
Lj6g0014237 Lotus japonicus HOM05D000127 ORTHO05D000243 1.2e-08 62.8 64 53.1
Medtr3g071880 Medicago truncatula HOM05D000127 ORTHO05D000243 1.2e-08 62.8 64 53.1
Ciclev10033935m.g Citrus clementina HOM05D000127 ORTHO05D000243 2.7e-08 61.6 62 53.2
PGR044G0455 Punica granatum HOM05D000127 ORTHO05D000243 2.7e-08 61.6 59 49.2
Thecc.10G009500 Theobroma cacao HOM05D000127 ORTHO05D000243 4.5e-08 60.8 59 52.5
Cpa.g.sc19.120 Carica papaya HOM05D000127 ORTHO05D000243 5.9e-08 60.5 65 43.1
COL.COLO4_25796 Corchorus olitorius HOM05D000127 ORTHO05D000243 5.9e-08 60.5 60 50.0
MBI15_g18590_MAGBIO Magnolia biondii HOM05D000127 ORTHO05D000243 5.9e-08 60.5 63 44.4
Nn2g11007 Nelumbo nucifera HOM05D000127 ORTHO05D000243 1.0e-07 59.7 59 50.8
SHI26949 Sapria himalayana HOM05D000127 ORTHO05D000243 1.0e-07 59.7 62 51.6
Eucgr.G03096 Eucalyptus grandis HOM05D000127 ORTHO05D000243 2.3e-07 58.5 63 47.6
MBI15_g44143_MAGBIO Magnolia biondii HOM05D000127 ORTHO05D000243 2.9e-07 58.2 63 42.9
Duzib128G1530 Durio zibethinus HOM05D000127 ORTHO05D000243 3.8e-07 57.8 62 48.4
PGR044G0064 Punica granatum HOM05D000127 ORTHO05D000243 3.8e-07 57.8 59 45.8
AUR62012313 Chenopodium quinoa HOM05D000127 ORTHO05D000243 5.0e-07 57.4 66 40.9
Ciclev10033736m.g Citrus clementina HOM05D000127 ORTHO05D000243 5.0e-07 57.4 61 49.2
EL10Ac2g04903 Beta vulgaris HOM05D000127 ORTHO05D000243 6.6e-07 57.0 66 39.4
Ciclev10033855m.g Citrus clementina HOM05D000127 ORTHO05D000243 6.6e-07 57.0 66 45.5
COL.COLO4_29343 Corchorus olitorius HOM05D000127 ORTHO05D000243 6.6e-07 57.0 62 41.9
MBI15_g16009_MAGBIO Magnolia biondii HOM05D000127 ORTHO05D000243 6.6e-07 57.0 66 42.4
Nn1g09380 Nelumbo nucifera HOM05D000127 ORTHO05D000243 6.6e-07 57.0 51 51.0
Thecc.10G009400 Theobroma cacao HOM05D000127 ORTHO05D000243 8.6e-07 56.6 62 48.4
Nn8g38633 Nelumbo nucifera HOM05D000127 ORTHO05D000243 1.1e-06 56.2 59 45.8
Sc10g0002690 Simmondsia chinensis HOM05D000127 ORTHO05D000243 1.1e-06 56.2 63 46.0
Eucgr.G03095 Eucalyptus grandis HOM05D000127 ORTHO05D000243 1.9e-06 55.5 60 46.7
Gohir.D10G249800 Gossypium hirsutum HOM05D000127 ORTHO05D000243 1.9e-06 55.5 62 46.8
MBI15_g40393_MAGBIO Magnolia biondii HOM05D000127 ORTHO05D000243 2.5e-06 55.1 64 46.9
Sc10g0002720 Simmondsia chinensis HOM05D000127 ORTHO05D030210 2.5e-06 55.1 56 53.6
AUR62022953 Chenopodium quinoa HOM05D000127 ORTHO05D000243 3.3e-06 54.7 66 37.9
COL.COLO4_29342 Corchorus olitorius HOM05D000127 ORTHO05D000243 3.3e-06 54.7 62 45.2
Eucgr.G03097 Eucalyptus grandis HOM05D000127 ORTHO05D000243 3.3e-06 54.7 69 46.4
Nn2g11008 Nelumbo nucifera HOM05D000127 ORTHO05D000243 3.3e-06 54.7 59 45.8
Nn1g09474 Nelumbo nucifera HOM05D000127 ORTHO05D000243 4.2e-06 54.3 51 52.9
ClCG03G000120 Citrullus lanatus HOM05D000127 ORTHO05D000243 5.5e-06 53.9 63 49.2
Gohir.A07G232000 Gossypium hirsutum HOM05D000127 ORTHO05D000243 7.2e-06 53.5 60 46.7
Gohir.D07G239200 Gossypium hirsutum HOM05D000127 ORTHO05D000243 7.2e-06 53.5 60 46.7
Gorai.001G275300 Gossypium raimondii HOM05D000127 ORTHO05D000243 7.2e-06 53.5 60 46.7
GSVIVG01030261001 Vitis vinifera HOM05D000389 ORTHO05D000287 7.2e-06 53.5 60 46.7
Ah.16g103970 Amaranthus hybridus HOM05D000127 ORTHO05D000243 9.5e-06 53.1 66 33.3
CiPaw.14G053900 Carya illinoinensis HOM05D000127 ORTHO05D000243 9.5e-06 53.1 62 43.5
Gorai.007G065900 Gossypium raimondii HOM05D000127 ORTHO05D000243 9.5e-06 53.1 61 49.2
Sc10g0002710 Simmondsia chinensis HOM05D000127 ORTHO05D000243 9.5e-06 53.1 63 41.3


User provided reference genes

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