Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G1645 Fragaria x ananassa HOM05D000509 ORTHO05D006393 4.2e-102 374.8 199 100.0
FvH4_7g14280 Fragaria vesca HOM05D000509 ORTHO05D006393 7.7e-64 247.7 139 93.5
FAN10G1528 Fragaria x ananassa HOM05D000509 ORTHO05D006393 7.7e-64 247.7 139 100.0
FAN03G2840 Fragaria x ananassa HOM05D000509 ORTHO05D006393 1.9e-62 243.0 139 97.1
FAN06G1484 Fragaria x ananassa HOM05D000509 ORTHO05D006393 6.7e-60 234.6 162 80.2
FAN01G0359 Fragaria x ananassa HOM05D000509 ORTHO05D006393 6.5e-55 218.0 142 87.3
RcHm_v2.0_Chr1g0355271 Rosa chinensis HOM05D000509 ORTHO05D006393 1.4e-54 216.9 141 90.8
FAN06G3105 Fragaria x ananassa HOM05D000509 ORTHO05D006393 3.5e-48 195.7 116 88.8
Prupe.1G174800 Prunus persica HOM05D000509 ORTHO05D006393 1.0e-31 141.0 140 62.1
Prupe.2G170600 Prunus persica HOM05D000509 ORTHO05D006393 8.5e-31 137.9 134 61.2
MD01G1060700 Malus domestica HOM05D000509 ORTHO05D006393 2.3e-28 129.8 132 64.4
MD07G1137000 Malus domestica HOM05D000509 ORTHO05D006393 1.7e-26 123.6 132 56.8
Glyma.18G233000 Glycine max HOM05D000509 ORTHO05D006393 2.0e-24 116.7 141 54.6
VMungo1383G0114 Vigna mungo HOM05D000509 ORTHO05D006393 2.3e-23 113.2 135 54.1
VMungo0540G0837 Vigna mungo HOM05D000509 ORTHO05D006393 3.8e-23 112.5 145 52.4
Ca_07920_v3 Cicer arietinum L. HOM05D000509 ORTHO05D006393 1.9e-22 110.2 131 59.5
Thecc.04G199400 Theobroma cacao HOM05D000509 ORTHO05D006393 2.5e-22 109.8 137 53.3
Psat3g108360 Pisum sativum HOM05D000509 ORTHO05D006393 9.5e-22 107.8 133 60.9
Cpa.g.sc11.3 Carica papaya HOM05D000509 ORTHO05D006393 1.2e-21 107.5 91 61.5
arahy.Tifrunner.gnm1.ann1.NYL5F5 Arachis hypogaea HOM05D000509 ORTHO05D006393 2.8e-21 106.3 130 53.1
Phvul.008G062400 Phaseolus vulgaris HOM05D000509 ORTHO05D006393 2.8e-21 106.3 133 53.4
arahy.Tifrunner.gnm1.ann1.E8SAKG Arachis hypogaea HOM05D000509 ORTHO05D006393 4.7e-21 105.5 147 49.7
Ciclev10022504m.g Citrus clementina HOM05D000509 ORTHO05D006393 6.1e-21 105.1 94 62.8
Phvul.008G065500 Phaseolus vulgaris HOM05D000509 ORTHO05D006393 8.9e-20 101.3 142 50.0
CiPaw.01G061300 Carya illinoinensis HOM05D000509 ORTHO05D006393 2.6e-19 99.8 140 49.3
Manes.07G019100 Manihot esculenta HOM05D000509 ORTHO05D006393 3.4e-19 99.4 144 50.7
TWI14G0500 Tripterygium wilfordii HOM05D000509 ORTHO05D006393 3.4e-19 99.4 139 46.8
CiPaw.02G030900 Carya illinoinensis HOM05D000509 ORTHO05D006393 5.7e-19 98.6 141 51.1
Eucgr.B00993 Eucalyptus grandis HOM05D000509 ORTHO05D006393 9.8e-19 97.8 131 49.6
Eucgr.B00880 Eucalyptus grandis HOM05D000509 ORTHO05D006393 1.7e-18 97.1 135 51.9
Actinidia12704 Actinidia chinensis HOM05D000509 ORTHO05D006393 2.2e-18 96.7 140 52.1
Duzib151G0093 Durio zibethinus HOM05D000509 ORTHO05D006393 2.2e-18 96.7 133 54.9
Lalb_Chr03g0038131 Lupinus albus HOM05D000509 ORTHO05D006393 4.9e-18 95.5 135 55.6
CSS0014656 Camellia sinensis var. sinensis HOM05D000509 ORTHO05D006393 6.4e-18 95.1 148 48.0
Dinv41795 Davidia involucrata HOM05D000509 ORTHO05D006393 6.4e-18 95.1 133 48.9
Cfa003925 Carpinus fangiana HOM05D000509 ORTHO05D006393 8.3e-18 94.7 122 50.8
MSTRG.20833 Avicennia marina HOM05D000509 ORTHO05D006393 1.8e-17 93.6 141 43.3
Haze_15506 Corylus avellana HOM05D000509 ORTHO05D006393 1.8e-17 93.6 124 50.8
CSS0014005 Camellia sinensis var. sinensis HOM05D000509 ORTHO05D006393 5.4e-17 92.0 158 48.7
Medtr8g095630 Medicago truncatula HOM05D000509 ORTHO05D006393 5.4e-17 92.0 130 48.5
Medtr7g077710 Medicago truncatula HOM05D000509 ORTHO05D006393 9.2e-17 91.3 111 50.5
Manes.10G122200 Manihot esculenta HOM05D000509 ORTHO05D006393 1.2e-16 90.9 138 50.7
Lj1g0015308 Lotus japonicus HOM05D000509 ORTHO05D006393 1.6e-16 90.5 139 47.5
PGR042G3203 Punica granatum HOM05D000509 ORTHO05D006393 1.6e-16 90.5 136 47.1
SalBow6G4776 Salvia bowleyana HOM05D000509 ORTHO05D006393 2.7e-16 89.7 140 45.0
THA.LOC104820589 Tarenaya hassleriana HOM05D000509 ORTHO05D006393 5.9e-16 88.6 137 51.8
Aa31LG1G27330 Aethionema arabicum HOM05D000509 ORTHO05D006393 7.8e-16 88.2 90 58.9
Cc02_g38030 Coffea canephora HOM05D000509 ORTHO05D006393 7.8e-16 88.2 138 42.0
AT3G61370 Arabidopsis thaliana HOM05D000509 ORTHO05D006393 1.3e-15 87.4 131 54.2
TWI23G0635 Tripterygium wilfordii HOM05D000509 ORTHO05D006393 1.3e-15 87.4 135 43.0
Rhsim07G0117300 Rhododendron simsii HOM05D000509 ORTHO05D006393 1.7e-15 87.0 136 43.4
Zm00001eb039300 Zea mays HOM05D000509 ORTHO05D006393 1.7e-15 87.0 127 43.3
DCAR_019105 Daucus carota HOM05D000509 ORTHO05D006393 2.3e-15 86.7 95 55.8
TPR.G37720 Trifolium pratense HOM05D000509 ORTHO05D006393 2.3e-15 86.7 113 56.6
BraA09t40768Z Brassica rapa HOM05D000509 ORTHO05D006393 3.0e-15 86.3 96 54.2
THA.LOC104798540 Tarenaya hassleriana HOM05D000509 ORTHO05D006393 3.0e-15 86.3 87 57.5
GSVIVG01008341001 Vitis vinifera HOM05D000509 ORTHO05D006393 3.9e-15 85.9 131 47.3
QL93p0259_0027 Quercus lobata HOM05D000509 ORTHO05D006393 6.6e-15 85.1 137 43.8
SGA_v2.0_scaffold95G28834 Striga asiatica HOM05D000509 ORTHO05D006393 6.6e-15 85.1 126 42.9
EL10Ac4g09051 Beta vulgaris HOM05D000509 ORTHO05D006393 1.1e-14 84.3 132 40.2
A09p53420 Brassica napus HOM05D000509 ORTHO05D006393 1.1e-14 84.3 90 56.7
Gohir.D02G024500 Gossypium hirsutum HOM05D000509 ORTHO05D006393 1.1e-14 84.3 132 44.7
Gohir.A02G020500 Gossypium hirsutum HOM05D000509 ORTHO05D006393 1.5e-14 84.0 132 44.7
Gohir.A08G013720 Gossypium hirsutum HOM05D000509 ORTHO05D006393 1.5e-14 84.0 132 44.7
MBI17_g24690_MAGBIO Magnolia biondii HOM05D000509 ORTHO05D006393 1.5e-14 84.0 138 44.9
Actinidia33421 Actinidia chinensis HOM05D001542 ORTHO05D001416 1.9e-14 83.6 150 45.3
CANSAT56G2260 Cannabis sativa HOM05D000509 ORTHO05D006393 1.9e-14 83.6 128 39.8
AUR62004883 Chenopodium quinoa HOM05D000509 ORTHO05D006393 1.9e-14 83.6 134 38.8
Potri.016G069200 Populus trichocarpa HOM05D000509 ORTHO05D006393 1.9e-14 83.6 134 47.0
C08p36230 Brassica napus HOM05D000509 ORTHO05D006393 2.5e-14 83.2 87 55.2
BolC8t51205H Brassica oleracea HOM05D000509 ORTHO05D006393 2.5e-14 83.2 87 55.2
Hund14886 Selenicereus undatus HOM05D000509 ORTHO05D006393 3.3e-14 82.8 139 45.3
Sp5g02030 Schrenkiella parvula HOM05D000509 ORTHO05D006393 4.3e-14 82.4 96 52.1
QL08p048801 Quercus lobata HOM05D000509 ORTHO05D006393 5.6e-14 82.0 117 53.0
Gorai.005G030400 Gossypium raimondii HOM05D000509 ORTHO05D006393 7.3e-14 81.6 132 44.7
CARHR171710 Cardamine hirsuta HOM05D000509 ORTHO05D006393 9.5e-14 81.3 89 52.8
Glyma.09G259300 Glycine max HOM05D000509 ORTHO05D006393 9.5e-14 81.3 84 56.0
Rhsim07G0117600 Rhododendron simsii HOM05D000509 ORTHO05D006393 9.5e-14 81.3 136 46.3
Thhalv10006311m.g Eutrema salsugineum HOM05D000509 ORTHO05D006393 1.2e-13 80.9 87 54.0
QL01p005382 Quercus lobata HOM05D000509 ORTHO05D006393 1.2e-13 80.9 137 43.1
Aqoxy2G02281 Aquilegia oxysepala HOM05D000509 ORTHO05D006393 1.6e-13 80.5 136 41.2
MELO3C021209.2 Cucumis melo HOM05D000509 ORTHO05D006393 2.8e-13 79.7 136 47.8
TAR636G2420 Trochodendron aralioides HOM05D000509 ORTHO05D006393 2.8e-13 79.7 133 45.1
CsaV3_6G000560 Cucumis sativus L. HOM05D000509 ORTHO05D006393 3.6e-13 79.3 151 44.4
Sed0001004 Sechium edule HOM05D000509 ORTHO05D006393 3.6e-13 79.3 142 47.2
PGSC0003DMG400000042 Solanum tuberosum HOM05D000509 ORTHO05D006393 3.6e-13 79.3 138 43.5
Nitab4.5_0000583g0080 Nicotiana tabacum HOM05D000509 ORTHO05D006393 6.2e-13 78.6 137 40.9
QL10p007195 Quercus lobata HOM05D000509 ORTHO05D006393 6.2e-13 78.6 76 57.9
unitig_0.g1262 Utricularia gibba HOM05D000509 ORTHO05D006393 1.1e-12 77.8 131 42.0
Sabra02G0116600 Salix brachista HOM05D000509 ORTHO05D006393 1.8e-12 77.0 134 44.0
Ah.04g163760 Amaranthus hybridus HOM05D000509 ORTHO05D006393 2.3e-12 76.6 124 38.7
EL10Ac8g20190 Beta vulgaris HOM05D000509 ORTHO05D006393 2.3e-12 76.6 136 41.9
Nn6g33420 Nelumbo nucifera HOM05D000509 ORTHO05D006393 2.3e-12 76.6 136 43.4
CAN.G78.80 Capsicum annuum HOM05D000509 ORTHO05D006393 1.2e-11 74.3 139 39.6
Dinv32484 Davidia involucrata HOM05D000509 ORTHO05D006393 1.2e-11 74.3 116 45.7
Solyc01g094630.3 Solanum lycopersicum HOM05D000509 ORTHO05D006393 1.2e-11 74.3 95 46.3
Sopen01g038440 Solanum pennellii HOM05D000509 ORTHO05D006393 1.2e-11 74.3 93 47.3
Carub.0005s2804 Capsella rubella HOM05D000509 ORTHO05D006393 1.5e-11 73.9 71 62.0
C04p31370 Brassica napus HOM05D000509 ORTHO05D006393 2.0e-11 73.6 98 50.0
Nitab4.5_0006762g0030 Nicotiana tabacum HOM05D000509 ORTHO05D006393 2.6e-11 73.2 145 39.3
AUR62001076 Chenopodium quinoa HOM05D000509 ORTHO05D006393 3.4e-11 72.8 86 47.7
PSO782G0796 Papaver somniferum HOM05D000509 ORTHO05D006393 4.4e-11 72.4 146 45.9
AL5G43630 Arabidopsis lyrata HOM05D000509 ORTHO05D006393 5.8e-11 72.0 87 52.9
ECA233G2837 Erigeron canadensis HOM05D000509 ORTHO05D006393 7.5e-11 71.6 134 40.3
Eucgr.L01454 Eucalyptus grandis HOM05D000509 ORTHO05D006393 7.5e-11 71.6 106 50.0
HPP92_020794 Vanilla planifolia HOM05D000509 ORTHO05D006393 7.5e-11 71.6 158 36.7
A04p01140 Brassica napus HOM05D000509 ORTHO05D006393 9.8e-11 71.2 103 47.6
Lsat_1_v5_gn_8_97941 Lactuca sativa HOM05D002211 ORTHO05D002206 9.8e-11 71.2 134 38.8
BcaC02g10220 Brassica carinata HOM05D000509 ORTHO05D006393 1.3e-10 70.9 91 52.7
PSO478G1119 Papaver somniferum HOM05D000509 ORTHO05D006393 1.7e-10 70.5 91 45.1
Ah.12g064210 Amaranthus hybridus HOM05D000509 ORTHO05D006393 2.9e-10 69.7 72 50.0
vmacro20943 Vaccinium macrocarpon HOM05D000509 ORTHO05D006393 3.7e-10 69.3 130 44.6
BcaC07g40634 Brassica carinata HOM05D000509 ORTHO05D006393 4.9e-10 68.9 118 49.2
BraA04t15830Z Brassica rapa HOM05D000509 ORTHO05D006393 4.9e-10 68.9 97 49.5
Rhsim07G0118400 Rhododendron simsii HOM05D000509 ORTHO05D006393 6.4e-10 68.6 119 42.0
Migut.B01755 Erythranthe guttata HOM05D000509 ORTHO05D006393 1.1e-09 67.8 134 40.3
QL11p053603 Quercus lobata HOM05D000509 ORTHO05D006393 1.1e-09 67.8 61 57.4
SEGI_38599 Sequoiadendron giganteum HOM05D000509 ORTHO05D006393 1.4e-09 67.4 93 46.2
Aa31LG5G5170 Aethionema arabicum HOM05D000509 ORTHO05D006393 2.4e-09 66.6 69 53.6
AL1G53560 Arabidopsis lyrata HOM05D000509 ORTHO05D006393 4.1e-09 65.9 71 56.3
CDE09G0401 Ceratophyllum demersum HOM05D000509 ORTHO05D006393 4.1e-09 65.9 123 37.4
BolC4t24686H Brassica oleracea HOM05D000509 ORTHO05D006393 5.4e-09 65.5 93 50.5
Os08g0559700 Oryza sativa ssp. japonica HOM05D000509 ORTHO05D006393 1.2e-08 64.3 110 39.1
GSVIVG01003391001 Vitis vinifera HOM05D000509 ORTHO05D006393 1.6e-08 63.9 53 62.3
ClCG06G003680 Citrullus lanatus HOM05D000509 ORTHO05D006393 2.0e-08 63.5 100 50.0
MBI17_g24691_MAGBIO Magnolia biondii HOM05D000509 ORTHO05D006393 2.0e-08 63.5 69 52.2
AT4G07940 Arabidopsis thaliana HOM05D000509 ORTHO05D006393 1.0e-07 61.2 149 36.2
Peaxi162Scf00020g00322 Petunia axillaris HOM05D000509 ORTHO05D006393 5.0e-07 58.9 68 51.5
Atru.chr5.498 Acer truncatum HOM05D000509 ORTHO05D006393 8.6e-07 58.2 48 66.7
HanXRQChr09g0257651 Helianthus annuus HOM05D000509 ORTHO05D006393 1.1e-06 57.8 82 51.2
Medtr8g095650 Medicago truncatula HOM05D000509 ORTHO05D006393 2.5e-06 56.6 113 38.1
ATR0680G086 Amborella trichopoda HOM05D000509 ORTHO05D006393 5.6e-06 55.5 56 55.4


User provided reference genes

Program Settings