Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G1641 Fragaria x ananassa HOM05D007090 ORTHO05D008993 2.2e-125 452.6 280 100.0
FAN01G0616 Fragaria x ananassa HOM05D007090 ORTHO05D008993 6.2e-112 407.9 339 80.8
FAN06G0781 Fragaria x ananassa HOM05D007090 ORTHO05D008993 1.5e-110 403.3 281 92.9
FvH4_7g11100 Fragaria vesca HOM05D007090 ORTHO05D008993 5.3e-103 378.3 281 90.0
FAN06G2008 Fragaria x ananassa HOM05D007090 ORTHO05D008993 1.2e-99 367.1 281 87.5
FAN03G3027 Fragaria x ananassa HOM05D007090 ORTHO05D008993 8.5e-93 344.4 385 62.9
RcHm_v2.0_Chr1g0349121 Rosa chinensis HOM05D007090 ORTHO05D008993 5.0e-85 318.5 284 81.3
FAN10G4025 Fragaria x ananassa HOM05D007090 ORTHO05D008993 8.5e-77 291.2 161 94.4
Prupe.2G138200 Prunus persica HOM05D007090 ORTHO05D008993 4.1e-63 245.7 311 58.5
MD02G1210400 Malus domestica HOM05D007090 ORTHO05D008993 8.6e-53 211.5 299 57.5
Potri.014G060700 Populus trichocarpa HOM05D007090 ORTHO05D008993 3.2e-47 193.0 279 51.6
Thecc.01G382600 Theobroma cacao HOM05D007090 ORTHO05D008993 3.2e-47 193.0 264 55.7
CiPaw.13G032600 Carya illinoinensis HOM05D007090 ORTHO05D008993 3.9e-45 186.0 296 45.9
CANSAT56G4322 Cannabis sativa HOM05D007090 ORTHO05D008993 8.6e-45 184.9 278 51.1
CANSAT56G0199 Cannabis sativa HOM05D007090 ORTHO05D008993 9.5e-44 181.4 278 50.7
QL04p038719 Quercus lobata HOM05D007090 ORTHO05D008993 1.6e-43 180.6 317 49.5
Gohir.D11G083500 Gossypium hirsutum HOM05D007090 ORTHO05D008993 3.6e-43 179.5 267 55.8
COL.COLO4_12490 Corchorus olitorius HOM05D007090 ORTHO05D008993 8.0e-43 178.3 282 55.0
Manes.05G048800 Manihot esculenta HOM05D007090 ORTHO05D008993 1.0e-42 177.9 270 57.4
VMungo0331G0297 Vigna mungo HOM05D007090 ORTHO05D008993 1.4e-42 177.6 289 51.6
TPR.G4946 Trifolium pratense HOM05D007090 ORTHO05D008993 3.1e-42 176.4 269 56.1
Lj3g0011300 Lotus japonicus HOM05D007090 ORTHO05D008993 5.2e-42 175.6 302 51.0
Phvul.010G072500 Phaseolus vulgaris HOM05D007090 ORTHO05D008993 6.8e-42 175.3 274 53.3
Glyma.03G032000 Glycine max HOM05D007090 ORTHO05D008993 2.6e-41 173.3 300 55.0
Lalb_Chr12g0207911 Lupinus albus HOM05D007090 ORTHO05D008993 1.3e-40 171.0 296 46.3
Haze_02682 Corylus avellana HOM05D007090 ORTHO05D008993 2.2e-40 170.2 277 49.8
Eucgr.E01513 Eucalyptus grandis HOM05D007090 ORTHO05D008993 2.9e-40 169.9 303 50.2
Ca_19835_v3 Cicer arietinum L. HOM05D007090 ORTHO05D008993 6.4e-40 168.7 289 54.3
vmacro13441 Vaccinium macrocarpon HOM05D007090 ORTHO05D008993 1.1e-39 167.9 345 38.3
Lsat_1_v5_gn_4_45521 Lactuca sativa HOM05D007090 ORTHO05D008993 1.4e-39 167.5 294 42.2
Sc26g0001310 Simmondsia chinensis HOM05D007090 ORTHO05D008993 3.2e-39 166.4 299 48.2
TAR375G0613 Trochodendron aralioides HOM05D007090 ORTHO05D008993 1.2e-38 164.5 301 41.2
HanXRQChr03g0088131 Helianthus annuus HOM05D007090 ORTHO05D008993 1.6e-38 164.1 298 47.7
Migut.N01613 Erythranthe guttata HOM05D007090 ORTHO05D008993 2.0e-38 163.7 250 48.0
Cc02_g24410 Coffea canephora HOM05D007090 ORTHO05D008993 2.7e-38 163.3 290 47.6
Atru.chr5.252 Acer truncatum HOM05D007090 ORTHO05D008993 4.6e-38 162.5 291 52.9
arahy.Tifrunner.gnm1.ann1.UP4D5N Arachis hypogaea HOM05D007090 ORTHO05D008993 6.0e-38 162.2 269 53.5
SalBow5G5305 Salvia bowleyana HOM05D007090 ORTHO05D008993 6.0e-38 162.2 278 49.6
MSTRG.4910 Avicennia marina HOM05D007090 ORTHO05D008993 7.8e-38 161.8 310 49.0
CsaV3_6G008990 Cucumis sativus L. HOM05D007090 ORTHO05D008993 2.3e-37 160.2 279 41.9
Psat7g236160 Pisum sativum HOM05D007090 ORTHO05D008993 3.9e-37 159.5 289 55.4
Nitab4.5_0000859g0240 Nicotiana tabacum HOM05D007090 ORTHO05D008993 8.6e-37 158.3 311 38.3
GSVIVG01027682001 Vitis vinifera HOM05D007090 ORTHO05D008993 1.1e-36 157.9 290 45.5
PSO782G4184 Papaver somniferum HOM05D007090 ORTHO05D008993 4.3e-36 156.0 279 40.5
Medtr4g026500 Medicago truncatula HOM05D007090 ORTHO05D008993 5.6e-36 155.6 289 53.6
Duzib138G0673 Durio zibethinus HOM05D007090 ORTHO05D008993 1.2e-35 154.5 308 43.8
Ciclev10021511m.g Citrus clementina HOM05D007090 ORTHO05D008993 4.7e-35 152.5 262 48.1
PGR042G2604 Punica granatum HOM05D007090 ORTHO05D008993 4.7e-35 152.5 283 43.8
vmacro22435 Vaccinium macrocarpon HOM05D007090 ORTHO05D008993 1.1e-34 151.4 169 52.1
Sabra14G0044500 Salix brachista HOM05D007090 ORTHO05D008993 2.3e-34 150.2 279 46.6
Ah.08g212650 Amaranthus hybridus HOM05D007090 ORTHO05D008993 3.1e-34 149.8 297 47.1
Gorai.007G089100 Gossypium raimondii HOM05D007090 ORTHO05D008993 3.1e-34 149.8 267 51.7
PSO063G1752 Papaver somniferum HOM05D007090 ORTHO05D008993 3.1e-34 149.8 291 35.4
Rhsim07G0031100 Rhododendron simsii HOM05D007090 ORTHO05D008993 4.0e-34 149.4 294 45.2
Hund17045 Selenicereus undatus HOM05D007090 ORTHO05D008993 2.6e-33 146.7 268 45.5
CSS0011917 Camellia sinensis var. sinensis HOM05D007090 ORTHO05D008993 1.7e-32 144.1 181 48.6
THA.LOC104803743 Tarenaya hassleriana HOM05D007090 ORTHO05D008993 1.7e-32 144.1 280 45.4
unitig_748.g7116 Utricularia gibba HOM05D007090 ORTHO05D008993 1.9e-31 140.6 269 37.9
Aqoxy5G03901 Aquilegia oxysepala HOM05D007090 ORTHO05D008993 2.4e-31 140.2 262 50.4
arahy.Tifrunner.gnm1.ann1.KQM8V4 Arachis hypogaea HOM05D007090 ORTHO05D008993 5.4e-31 139.0 251 47.4
Actinidia22817 Actinidia chinensis HOM05D007090 ORTHO05D008993 1.2e-30 137.9 278 46.8
DCAR_015886 Daucus carota HOM05D007090 ORTHO05D008993 3.5e-30 136.3 270 44.1
Actinidia22762 Actinidia chinensis HOM05D007090 ORTHO05D008993 1.0e-29 134.8 248 48.8
Sp6g00210 Schrenkiella parvula HOM05D007090 ORTHO05D008993 1.0e-29 134.8 273 40.7
Thhalv10028898m.g Eutrema salsugineum HOM05D007090 ORTHO05D008993 6.6e-29 132.1 248 41.5
Os04g0534300 Oryza sativa ssp. japonica HOM05D007090 ORTHO05D008993 2.5e-28 130.2 287 46.7
Aa31LG5G170 Aethionema arabicum HOM05D007090 ORTHO05D008993 3.6e-27 126.3 285 37.5
ATR0317G013 Amborella trichopoda HOM05D007090 ORTHO05D008993 6.2e-27 125.6 163 46.6
EL10Ac1g00840 Beta vulgaris HOM05D007090 ORTHO05D008993 6.2e-27 125.6 155 45.2
SGA_v2.0_scaffold11G05536 Striga asiatica HOM05D007090 ORTHO05D008993 2.3e-26 123.6 278 35.6
MELO3C022245.2 Cucumis melo HOM05D007090 ORTHO05D008993 3.1e-26 123.2 279 39.4
Nn1g01037 Nelumbo nucifera HOM05D007090 ORTHO05D008993 6.8e-26 122.1 308 38.3
Oeu051923.2 Olea europaea HOM05D007090 ORTHO05D008993 1.2e-25 121.3 280 40.4
CARHR248180 Cardamine hirsuta HOM05D007090 ORTHO05D008993 1.5e-25 120.9 269 48.0
AL6G53360 Arabidopsis lyrata HOM05D007090 ORTHO05D008993 7.6e-25 118.6 272 40.8
AT1G73440 Arabidopsis thaliana HOM05D007090 ORTHO05D008993 1.3e-24 117.9 277 43.0
ECA234G0545 Erigeron canadensis HOM05D007090 ORTHO05D008993 1.3e-24 117.9 264 41.7
Sopen01g036660 Solanum pennellii HOM05D007090 ORTHO05D008993 1.3e-24 117.9 321 33.6
TWI23G0238 Tripterygium wilfordii HOM05D007090 ORTHO05D008993 2.2e-24 117.1 307 33.9
Peaxi162Scf00803g00118 Petunia axillaris HOM05D007090 ORTHO05D008993 6.4e-24 115.5 160 45.6
Dinv44119 Davidia involucrata HOM05D007090 ORTHO05D008993 1.9e-23 114.0 270 45.9
ClCG06G002820 Citrullus lanatus HOM05D007090 ORTHO05D008993 4.1e-23 112.8 303 32.7
Hma1.2p1_0005F.1_g004490 Hydrangea macrophylla HOM05D007090 ORTHO05D008993 5.4e-23 112.5 284 45.4
Carub.0006s3709 Capsella rubella HOM05D007090 ORTHO05D008993 7.1e-23 112.1 267 42.3
CAN.G1469.17 Capsicum annuum HOM05D007090 ORTHO05D008993 1.2e-22 111.3 305 35.7
CDE04G3442 Ceratophyllum demersum HOM05D007090 ORTHO05D008993 1.6e-22 110.9 282 32.3
Solyc01g090920.3 Solanum lycopersicum HOM05D007090 ORTHO05D008993 2.1e-22 110.5 331 32.3
Gohir.A11G078900 Gossypium hirsutum HOM05D007090 ORTHO05D008993 3.9e-21 106.3 194 53.1
Eucgr.E01517 Eucalyptus grandis HOM05D007090 ORTHO05D008993 5.1e-21 105.9 87 59.8
Nitab4.5_0008963g0010 Nicotiana tabacum HOM05D007090 ORTHO05D008993 6.6e-21 105.5 310 31.3
Sed0010456 Sechium edule HOM05D007090 ORTHO05D008993 8.6e-21 105.1 254 39.0
PGSC0003DMG400025974 Solanum tuberosum HOM05D007090 ORTHO05D008993 1.5e-20 104.4 318 35.5
CSS0004451 Camellia sinensis var. sinensis HOM05D007090 ORTHO05D008993 3.3e-20 103.2 161 43.5
BcaB01g02215 Brassica carinata HOM05D007090 ORTHO05D008993 5.6e-20 102.4 268 46.6
A09p00730 Brassica napus HOM05D007090 ORTHO05D008993 4.0e-18 96.3 275 42.2
C09p00130 Brassica napus HOM05D007090 ORTHO05D008993 1.2e-17 94.7 275 40.7
BraA09t35687Z Brassica rapa HOM05D007090 ORTHO05D008993 1.2e-17 94.7 275 40.7
BolC9t52948H Brassica oleracea HOM05D007090 ORTHO05D008993 4.9e-16 89.4 248 45.6
BcaC04g24200 Brassica carinata HOM05D007090 ORTHO05D008993 1.1e-15 88.2 249 44.6
Cpa.g.sc49.155 Carica papaya HOM05D007090 ORTHO05D008993 4.6e-14 82.8 66 57.6
ECA234G4391 Erigeron canadensis HOM05D007090 ORTHO05D008993 1.5e-12 77.8 145 39.3
Pp3c13_5390 Physcomitrium patens HOM05D007090 ORTHO05D008993 3.6e-11 73.2 164 32.3
SEGI_04858 Sequoiadendron giganteum HOM05D007090 ORTHO05D008993 1.4e-10 71.2 56 50.0
Mapoly0035s0135 Marchantia polymorpha HOM05D007090 ORTHO05D008993 6.9e-10 68.9 150 34.0
CBR_g23736 Chara braunii HOM05D007090 ORTHO05D008993 9.0e-10 68.6 100 34.0
SMO137G0209 Selaginella moellendorffii HOM05D007090 ORTHO05D008993 9.9e-09 65.1 138 31.2
Actinidia12185 Actinidia chinensis HOM05D007090 ORTHO05D008993 4.6e-06 56.2 85 47.1
Lj7P535T24 Lonicera japonica HOM05D007090 ORTHO05D008993 6.0e-06 55.8 86 52.3


User provided reference genes

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