Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G1597 Fragaria x ananassa HOM05D008009 ORTHO05D010177 1.9e-145 519.2 275 100.0
FAN10G4026 Fragaria x ananassa HOM05D008009 ORTHO05D010177 5.0e-130 468.0 281 92.2
FAN01G0151 Fragaria x ananassa HOM05D008009 ORTHO05D010177 1.1e-126 456.8 281 90.4
FAN06G2831 Fragaria x ananassa HOM05D008009 ORTHO05D010177 1.1e-126 456.8 281 90.7
FvH4_7g12940 Fragaria vesca HOM05D008009 ORTHO05D010177 5.7e-126 454.5 281 90.4
FAN06G1824 Fragaria x ananassa HOM05D008009 ORTHO05D010177 2.2e-125 452.6 279 90.3
FAN03G0554 Fragaria x ananassa HOM05D008009 ORTHO05D010177 3.5e-123 445.3 285 87.0
RcHm_v2.0_Chr1g0352071 Rosa chinensis HOM05D008009 ORTHO05D010177 3.7e-109 398.7 283 81.6
QL08p050750 Quercus lobata HOM05D008009 ORTHO05D010177 7.1e-84 314.7 255 67.5
CANSAT56G2363 Cannabis sativa HOM05D008009 ORTHO05D010177 1.8e-79 300.1 241 68.5
Potri.014G077600 Populus trichocarpa HOM05D008009 ORTHO05D010177 2.3e-79 299.7 245 65.7
Prupe.2G153700 Prunus persica HOM05D008009 ORTHO05D010177 3.1e-79 299.3 198 80.3
Cfa021163 Carpinus fangiana HOM05D008009 ORTHO05D010177 4.0e-79 298.9 239 68.6
CAN.G170.56 Capsicum annuum HOM05D008009 ORTHO05D010177 6.8e-79 298.1 263 64.3
Cfa004175 Carpinus fangiana HOM05D008009 ORTHO05D010177 1.5e-78 297.0 239 67.8
Eucgr.E00219 Eucalyptus grandis HOM05D008009 ORTHO05D010177 2.0e-78 296.6 272 62.9
Peaxi162Scf00021g00312 Petunia axillaris HOM05D008009 ORTHO05D010177 2.0e-78 296.6 247 66.0
Haze_15234 Corylus avellana HOM05D008009 ORTHO05D010177 5.8e-78 295.0 239 67.4
SalBow3G1346 Salvia bowleyana HOM05D008009 ORTHO05D010177 5.8e-78 295.0 246 65.9
GSVIVG01027596001 Vitis vinifera HOM05D008009 ORTHO05D010177 7.6e-78 294.7 241 66.4
MSTRG.17230 Avicennia marina HOM05D008009 ORTHO05D010177 1.7e-77 293.5 239 66.9
Lsat_1_v5_gn_7_8101 Lactuca sativa HOM05D008009 ORTHO05D010177 2.2e-77 293.1 237 67.1
Solyc01g091850.3 Solanum lycopersicum HOM05D008009 ORTHO05D010177 2.2e-77 293.1 241 66.4
Sopen01g037620 Solanum pennellii HOM05D008009 ORTHO05D010177 2.2e-77 293.1 241 66.4
PGSC0003DMG400000002 Solanum tuberosum HOM05D008009 ORTHO05D010177 1.4e-76 290.4 247 64.4
SGA_v2.0_scaffold95G28877 Striga asiatica HOM05D008009 ORTHO05D010177 2.7e-75 286.2 245 62.4
PGR042G1113 Punica granatum HOM05D008009 ORTHO05D010177 3.5e-75 285.8 237 66.7
HanXRQChr06g0169381 Helianthus annuus HOM05D008009 ORTHO05D010177 6.0e-75 285.0 240 64.6
Cc02_g37180 Coffea canephora HOM05D008009 ORTHO05D010177 1.0e-74 284.3 246 62.6
DCAR_006901 Daucus carota HOM05D008009 ORTHO05D010177 8.6e-74 281.2 278 57.9
Migut.B01680 Erythranthe guttata HOM05D008009 ORTHO05D010177 1.1e-73 280.8 241 62.7
Ca_07869_v3 Cicer arietinum L. HOM05D008009 ORTHO05D010177 3.6e-72 275.8 265 58.5
Ca_29748_v3 Cicer arietinum L. HOM05D008009 ORTHO05D010177 3.6e-72 275.8 265 58.5
Actinidia27148 Actinidia chinensis HOM05D008009 ORTHO05D010177 8.1e-72 274.6 271 59.8
Atru.chr5.397 Acer truncatum HOM05D008009 ORTHO05D010177 2.4e-71 273.1 238 62.2
arahy.Tifrunner.gnm1.ann1.RW66HN Arachis hypogaea HOM05D008009 ORTHO05D010177 2.4e-71 273.1 241 61.4
Medtr7g076320 Medicago truncatula HOM05D008009 ORTHO05D010177 2.4e-71 273.1 243 61.3
ECA236G3590 Erigeron canadensis HOM05D008009 ORTHO05D010177 3.1e-71 272.7 256 59.0
Atru.chr5.391 Acer truncatum HOM05D008009 ORTHO05D010177 6.8e-71 271.6 238 61.8
Aqoxy5G03972 Aquilegia oxysepala HOM05D008009 ORTHO05D010177 9.9e-70 267.7 263 57.8
Psat3g112360 Pisum sativum HOM05D008009 ORTHO05D010177 3.8e-69 265.8 256 57.4
Dinv43752 Davidia involucrata HOM05D008009 ORTHO05D010177 6.4e-69 265.0 224 66.1
Lj1g0026011 Lotus japonicus HOM05D008009 ORTHO05D010177 4.2e-68 262.3 269 56.9
Glyma.18G228200 Glycine max HOM05D008009 ORTHO05D010177 1.6e-67 260.4 249 59.8
Nitab4.5_0009025g0020 Nicotiana tabacum HOM05D002524 ORTHO05D002718 2.1e-67 260.0 259 59.5
VMungo1383G2711 Vigna mungo HOM05D008009 ORTHO05D010177 2.1e-67 260.0 249 57.8
Phvul.008G070000 Phaseolus vulgaris HOM05D008009 ORTHO05D010177 6.0e-67 258.5 249 58.2
Nn6g34273 Nelumbo nucifera HOM05D008009 ORTHO05D010177 1.9e-65 253.4 247 56.3
unitig_0.g1290 Utricularia gibba HOM05D008009 ORTHO05D010177 3.3e-65 252.7 255 56.1
Nitab4.5_0012175g0010 Nicotiana tabacum HOM05D002524 ORTHO05D002718 1.6e-64 250.4 208 65.9
AUR62004286 Chenopodium quinoa HOM05D008009 ORTHO05D010177 1.4e-63 247.3 196 64.8
Hma1.2p1_0033F.1_g020690 Hydrangea macrophylla HOM05D008009 ORTHO05D010177 1.8e-63 246.9 196 64.3
Nitab4.5_0006706g0010 Nicotiana tabacum HOM05D008009 ORTHO05D010177 3.1e-63 246.1 240 60.4
AUR62033371 Chenopodium quinoa HOM05D008009 ORTHO05D010177 1.5e-62 243.8 196 63.8
TPR.G37743 Trifolium pratense HOM05D008009 ORTHO05D010177 1.5e-62 243.8 242 56.2
SEGI_40209 Sequoiadendron giganteum HOM05D008009 ORTHO05D010177 2.0e-62 243.4 262 53.4
arahy.Tifrunner.gnm1.ann1.EX28FW Arachis hypogaea HOM05D008009 ORTHO05D010177 6.9e-55 218.4 182 60.4
EL10Ac1g00970 Beta vulgaris HOM05D008009 ORTHO05D010177 3.4e-54 216.1 258 50.0
Pp3c16_7270 Physcomitrium patens HOM05D008009 ORTHO05D010177 2.1e-51 206.8 252 46.0
Pp3c25_40 Physcomitrium patens HOM05D008009 ORTHO05D010177 5.1e-50 202.2 229 48.9
COL.COLO4_12632 Corchorus olitorius HOM05D008009 ORTHO05D010177 9.6e-49 198.0 275 48.0
CiPaw.01G052300 Carya illinoinensis HOM05D008009 ORTHO05D010177 3.7e-48 196.1 178 62.9
Gorai.004G156000 Gossypium raimondii HOM05D008009 ORTHO05D010177 4.8e-48 195.7 231 50.2
Gohir.D08G150200 Gossypium hirsutum HOM05D008009 ORTHO05D010177 8.1e-48 194.9 231 49.8
Duzib133G0776 Durio zibethinus HOM05D008009 ORTHO05D010177 6.9e-47 191.8 176 59.1
Mapoly0089s0055 Marchantia polymorpha HOM05D008009 ORTHO05D010177 7.1e-44 181.8 248 45.2
Gohir.A08G129000 Gossypium hirsutum HOM05D008009 ORTHO05D010177 3.3e-41 172.9 231 45.9
Ah.05g175960 Amaranthus hybridus HOM05D008009 ORTHO05D010177 3.7e-40 169.5 234 49.1
MCO11G458 Micromonas commoda HOM05D008009 ORTHO05D010177 1.9e-36 157.1 229 38.9
Nn4g22699 Nelumbo nucifera HOM05D008009 ORTHO05D010177 6.1e-35 152.1 154 53.2
PRCOL_00006926 Prasinoderma coloniale HOM05D008009 ORTHO05D010177 8.5e-29 131.7 230 37.4
MBI12_g11808_MAGBIO Magnolia biondii HOM05D008009 ORTHO05D010177 2.2e-21 107.1 117 54.7
Thecc.01G369500 Theobroma cacao HOM05D008009 ORTHO05D010177 2.6e-17 93.6 259 32.4
SEGI_11444 Sequoiadendron giganteum HOM05D008009 ORTHO05D010177 9.7e-17 91.7 104 48.1
Duzib251G0065 Durio zibethinus HOM05D003797 ORTHO05D004370 3.3e-09 66.6 233 27.9
SGA_v2.0_scaffold23G10159 Striga asiatica HOM05D003797 ORTHO05D004370 3.3e-09 66.6 216 26.9
COL.COLO4_27614 Corchorus olitorius HOM05D003797 ORTHO05D004370 1.7e-08 64.3 223 25.1
PGR142G2609 Punica granatum HOM05D003797 ORTHO05D004370 2.8e-08 63.5 222 26.1
Thecc.02G307900 Theobroma cacao HOM05D003797 ORTHO05D004370 3.7e-08 63.2 196 27.6
Atru.chr11.837 Acer truncatum HOM05D003797 ORTHO05D004370 4.8e-08 62.8 219 26.5
Duzib251G0134 Durio zibethinus HOM05D003797 ORTHO05D004370 6.3e-08 62.4 216 26.4
Prupe.1G335200 Prunus persica HOM05D003797 ORTHO05D004370 8.2e-08 62.0 216 28.2
Duzib248G0263 Durio zibethinus HOM05D003797 ORTHO05D004370 1.1e-07 61.6 216 26.9
MD13G1018700 Malus domestica HOM05D003797 ORTHO05D004370 1.1e-07 61.6 216 26.9
Dinv06119 Davidia involucrata HOM05D003797 ORTHO05D004370 1.8e-07 60.8 216 26.4
Duzib268G1244 Durio zibethinus HOM05D003797 ORTHO05D004370 1.8e-07 60.8 217 26.7
CsaV3_5G027940 Cucumis sativus L. HOM05D003797 ORTHO05D004370 2.4e-07 60.5 216 27.3
Gorai.013G029700 Gossypium raimondii HOM05D003797 ORTHO05D004370 2.4e-07 60.5 216 26.9
Thecc.02G308100 Theobroma cacao HOM05D003797 ORTHO05D004370 2.4e-07 60.5 216 27.3
Ah.09g234580 Amaranthus hybridus HOM05D003797 ORTHO05D004370 3.1e-07 60.1 216 27.3
ATR0118G024 Amborella trichopoda HOM05D003797 ORTHO05D004370 3.1e-07 60.1 233 25.3
AT2G01770 Arabidopsis thaliana HOM05D003797 ORTHO05D004370 4.1e-07 59.7 216 26.9
COL.COLO4_27615 Corchorus olitorius HOM05D003797 ORTHO05D004370 4.1e-07 59.7 216 25.9
Lj3A863T39 Lonicera japonica HOM05D003797 ORTHO05D004370 4.1e-07 59.7 233 26.6
Manes.17G085600 Manihot esculenta HOM05D003797 ORTHO05D004370 4.1e-07 59.7 218 24.8
Potri.010G104100 Populus trichocarpa HOM05D003797 ORTHO05D004370 4.1e-07 59.7 218 26.1
Sed0007838 Sechium edule HOM05D003797 ORTHO05D004370 4.1e-07 59.7 216 26.9
AL5G10900 Arabidopsis lyrata HOM05D003797 ORTHO05D004370 5.3e-07 59.3 216 26.9
MSTRG.2118 Avicennia marina HOM05D003797 ORTHO05D004370 5.3e-07 59.3 216 26.9
CSS0047498 Camellia sinensis var. sinensis HOM05D003797 ORTHO05D004370 5.3e-07 59.3 216 25.9
FvH4_4g33340 Fragaria vesca HOM05D003797 ORTHO05D004370 5.3e-07 59.3 217 25.8
FAN07G0297 Fragaria x ananassa HOM05D003797 ORTHO05D004370 5.3e-07 59.3 242 26.0
Prupe.1G335300 Prunus persica HOM05D003797 ORTHO05D004370 5.3e-07 59.3 219 26.0
unitig_8.g4013 Utricularia gibba HOM05D003797 ORTHO05D004370 5.3e-07 59.3 216 26.4
GSVIVG01011628001 Vitis vinifera HOM05D003797 ORTHO05D004370 5.3e-07 59.3 217 25.8
Dinv26370 Davidia involucrata HOM05D003797 ORTHO05D004370 7.0e-07 58.9 218 26.1
Eucgr.B02691 Eucalyptus grandis HOM05D003797 ORTHO05D004370 7.0e-07 58.9 222 24.8
FAN22G2109 Fragaria x ananassa HOM05D003797 ORTHO05D004370 7.0e-07 58.9 242 26.0
Gohir.D13G026400 Gossypium hirsutum HOM05D003797 ORTHO05D004370 7.0e-07 58.9 216 25.9
PSO339G4314 Papaver somniferum HOM05D003797 ORTHO05D004370 9.1e-07 58.5 219 26.0
PSO384G3089 Papaver somniferum HOM05D003797 ORTHO05D004370 9.1e-07 58.5 223 26.9
ECA234G4680 Erigeron canadensis HOM05D003797 ORTHO05D004370 1.2e-06 58.2 216 26.4
MD16G1016500 Malus domestica HOM05D003797 ORTHO05D004370 1.2e-06 58.2 219 25.1
RcHm_v2.0_Chr4g0442581 Rosa chinensis HOM05D003797 ORTHO05D004370 1.2e-06 58.2 219 25.1
RcHm_v2.0_Chr4g0442611 Rosa chinensis HOM05D003797 ORTHO05D004370 1.2e-06 58.2 216 26.4
Sabra10G0076600 Salix brachista HOM05D003797 ORTHO05D004370 1.2e-06 58.2 216 27.3
PGSC0003DMG400029467 Solanum tuberosum HOM05D003797 ORTHO05D004370 1.2e-06 58.2 216 25.5
THA.LOC104823632 Tarenaya hassleriana HOM05D003797 ORTHO05D004370 1.2e-06 58.2 226 23.9
A02p32320 Brassica napus HOM05D003797 ORTHO05D004370 1.6e-06 57.8 216 26.9
C02p49920 Brassica napus HOM05D003797 ORTHO05D004370 1.6e-06 57.8 216 26.9
BolC2t11071H Brassica oleracea HOM05D003797 ORTHO05D004370 1.6e-06 57.8 216 26.9
BraA02t08249Z Brassica rapa HOM05D003797 ORTHO05D004370 1.6e-06 57.8 216 26.9
FAN07G2428 Fragaria x ananassa HOM05D003797 ORTHO05D004370 1.6e-06 57.8 219 24.7
HanXRQChr17g0565981 Helianthus annuus HOM05D003797 ORTHO05D004370 1.6e-06 57.8 216 25.5
PGR102G0637 Punica granatum HOM05D003797 ORTHO05D004370 1.6e-06 57.8 188 27.1
Solyc04g008060.3 Solanum lycopersicum HOM05D003797 ORTHO05D004370 1.6e-06 57.8 216 25.5
Sopen04g003210 Solanum pennellii HOM05D003797 ORTHO05D004370 1.6e-06 57.8 216 25.5
unitig_22.g5605 Utricularia gibba HOM05D003797 ORTHO05D004370 1.6e-06 57.8 224 26.3
BcaB07g30374 Brassica carinata HOM05D003797 ORTHO05D004370 2.0e-06 57.4 219 26.5
Carub.0005s0073 Capsella rubella HOM05D003797 ORTHO05D004370 2.0e-06 57.4 216 27.3
CiPaw.06G054800 Carya illinoinensis HOM05D003797 ORTHO05D004370 2.0e-06 57.4 217 24.4
Ciclev10017583m.g Citrus clementina HOM05D003797 ORTHO05D004370 2.0e-06 57.4 217 24.4
FAN12G2011 Fragaria x ananassa HOM05D003797 ORTHO05D004370 2.0e-06 57.4 219 25.1
MBI19_g09381_MAGBIO Magnolia biondii HOM05D003797 ORTHO05D004370 2.0e-06 57.4 216 25.0
MD16G1016600 Malus domestica HOM05D003797 ORTHO05D004370 2.0e-06 57.4 216 26.4
Ah.14g087870 Amaranthus hybridus HOM05D003797 ORTHO05D004370 2.7e-06 57.0 249 24.9
BcaC03g17074 Brassica carinata HOM05D003797 ORTHO05D004370 2.7e-06 57.0 216 26.9
Cpa.g.sc2.168 Carica papaya HOM05D003797 ORTHO05D004370 2.7e-06 57.0 216 26.4
HanXRQChr16g0527241 Helianthus annuus HOM05D003797 ORTHO05D004370 2.7e-06 57.0 216 25.5
Hma1.2p1_0234F.1_g098420 Hydrangea macrophylla HOM05D003797 ORTHO05D004370 2.7e-06 57.0 216 26.9
Nn3g18415 Nelumbo nucifera HOM05D003797 ORTHO05D004370 2.7e-06 57.0 200 26.5
Potri.010G104200 Populus trichocarpa HOM05D003797 ORTHO05D004370 2.7e-06 57.0 216 25.9
Sed0023787 Sechium edule HOM05D003797 ORTHO05D004370 2.7e-06 57.0 218 24.3
Aa31LG2G8120 Aethionema arabicum HOM05D003797 ORTHO05D004370 3.5e-06 56.6 216 24.1
ClCG07G005420 Citrullus lanatus HOM05D003797 ORTHO05D004370 3.5e-06 56.6 216 25.5
Ciclev10016475m.g Citrus clementina HOM05D003797 ORTHO05D004370 3.5e-06 56.6 224 25.4
MELO3C005260.2 Cucumis melo HOM05D003797 ORTHO05D004370 3.5e-06 56.6 219 24.2
CsaV3_5G027930 Cucumis sativus L. HOM05D003797 ORTHO05D004370 3.5e-06 56.6 219 23.7
Gohir.A13G027600 Gossypium hirsutum HOM05D003797 ORTHO05D004370 3.5e-06 56.6 216 25.9
Oeu006298.1 Olea europaea HOM05D003797 ORTHO05D004370 3.5e-06 56.6 216 25.5
RcHm_v2.0_Chr4g0442571 Rosa chinensis HOM05D003797 ORTHO05D004370 3.5e-06 56.6 219 24.7
Actinidia36612 Actinidia chinensis HOM05D003797 ORTHO05D004370 4.5e-06 56.2 216 25.0
AUR62012750 Chenopodium quinoa HOM05D003797 ORTHO05D004370 4.5e-06 56.2 216 25.9
AUR62021908 Chenopodium quinoa HOM05D003797 ORTHO05D004370 4.5e-06 56.2 216 25.9
FAN17G2298 Fragaria x ananassa HOM05D003797 ORTHO05D004370 4.5e-06 56.2 242 25.2
QL03p037918 Quercus lobata HOM05D003797 ORTHO05D004370 4.5e-06 56.2 226 23.9
CiPaw.06G054700 Carya illinoinensis HOM05D003797 ORTHO05D004370 5.9e-06 55.8 216 27.3
FAN22G0305 Fragaria x ananassa HOM05D003797 ORTHO05D004370 5.9e-06 55.8 219 24.2
Glyma.08G047500 Glycine max HOM05D003797 ORTHO05D004370 5.9e-06 55.8 216 26.4
Nitab4.5_0002414g0010 Nicotiana tabacum HOM05D003797 ORTHO05D004370 5.9e-06 55.8 216 25.5
Nitab4.5_0003619g0020 Nicotiana tabacum HOM05D003797 ORTHO05D004370 5.9e-06 55.8 216 25.0
QL03p037712 Quercus lobata HOM05D003797 ORTHO05D004370 5.9e-06 55.8 216 25.5
Sp2g13230 Schrenkiella parvula HOM05D003797 ORTHO05D004370 5.9e-06 55.8 216 25.0
VMungo0251G2898 Vigna mungo HOM05D003797 ORTHO05D004370 5.9e-06 55.8 216 26.4
CANSAT78G1947 Cannabis sativa HOM05D003797 ORTHO05D004370 7.7e-06 55.5 219 25.6
CAN.G74.19 Capsicum annuum HOM05D003797 ORTHO05D004370 7.7e-06 55.5 216 25.0
CARHR144350 Cardamine hirsuta HOM05D003797 ORTHO05D004370 7.7e-06 55.5 241 25.3
Dinv03968 Davidia involucrata HOM05D003797 ORTHO05D004370 7.7e-06 55.5 215 24.2
FAN17G0483 Fragaria x ananassa HOM05D003797 ORTHO05D004370 7.7e-06 55.5 219 24.2
Manes.15G136600 Manihot esculenta HOM05D003797 ORTHO05D004370 7.7e-06 55.5 216 26.4
Rhsim09G0088200 Rhododendron simsii HOM05D003797 ORTHO05D004370 7.7e-06 55.5 216 26.4


User provided reference genes

Program Settings