Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G1555 Fragaria x ananassa HOM05D005367 ORTHO05D006328 3.0e-54 214.9 108 100.0
FvH4_7g14150 Fragaria vesca HOM05D005367 ORTHO05D006328 8.4e-49 196.8 103 96.1
FAN06G0563 Fragaria x ananassa HOM05D005367 ORTHO05D006328 8.4e-49 196.8 103 96.1
FAN10G0042 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.4e-48 195.3 103 95.1
FAN01G2456 Fragaria x ananassa HOM05D005367 ORTHO05D006328 3.2e-48 194.9 103 95.1
FAN03G1221 Fragaria x ananassa HOM05D005367 ORTHO05D006328 7.1e-48 193.7 103 95.1
RcHm_v2.0_Chr1g0355051 Rosa chinensis HOM05D005367 ORTHO05D006328 8.7e-38 160.2 103 78.6
RcHm_v2.0_Chr1g0354801 Rosa chinensis HOM05D005367 ORTHO05D006328 1.3e-36 156.4 102 76.5
Prupe.2G167900 Prunus persica HOM05D005367 ORTHO05D006328 4.2e-24 114.8 110 57.3
MD07G1139200 Malus domestica HOM05D005367 ORTHO05D006328 2.3e-22 109.0 100 57.0
MD01G1057500 Malus domestica HOM05D005367 ORTHO05D006328 1.1e-21 106.7 100 57.0
FAN10G0871 Fragaria x ananassa HOM05D005367 ORTHO05D006328 8.2e-20 100.5 54 94.4
FAN10G3879 Fragaria x ananassa HOM05D005367 ORTHO05D006328 3.1e-19 98.6 54 92.6
Duzib133G0249 Durio zibethinus HOM05D005367 ORTHO05D006328 5.5e-16 87.8 99 47.5
COL.COLO4_12698 Corchorus olitorius HOM05D005367 ORTHO05D006328 7.2e-16 87.4 118 44.1
MD01G1056800 Malus domestica HOM05D005367 ORTHO05D006328 7.2e-16 87.4 82 54.9
GSVIVG01026893001 Vitis vinifera HOM05D005367 ORTHO05D006328 1.6e-15 86.3 101 47.5
CANSAT56G3377 Cannabis sativa HOM05D005367 ORTHO05D006328 8.0e-15 84.0 102 50.0
Thecc.01G360700 Theobroma cacao HOM05D005367 ORTHO05D006328 1.0e-14 83.6 112 43.8
Potri.002G158500 Populus trichocarpa HOM05D005367 ORTHO05D006328 1.4e-14 83.2 102 48.0
CSS0040093 Camellia sinensis var. sinensis HOM05D005367 ORTHO05D006328 5.2e-14 81.3 99 44.4
Sabra14G0059900 Salix brachista HOM05D005367 ORTHO05D006328 8.8e-14 80.5 109 43.1
Atru.chr5.466 Acer truncatum HOM05D005367 ORTHO05D006328 1.1e-13 80.1 99 44.4
CSS0033809 Camellia sinensis var. sinensis HOM05D005367 ORTHO05D006328 1.1e-13 80.1 103 42.7
QL08p049031 Quercus lobata HOM05D005367 ORTHO05D006328 1.1e-13 80.1 108 41.7
DCAR_000242 Daucus carota HOM05D005367 ORTHO05D006328 1.5e-13 79.7 108 42.6
TWI59G0064 Tripterygium wilfordii HOM05D005367 ORTHO05D006328 2.6e-13 79.0 121 42.1
Haze_15487 Corylus avellana HOM05D005367 ORTHO05D006328 5.7e-13 77.8 125 40.8
Actinidia20916 Actinidia chinensis HOM05D005367 ORTHO05D006328 7.4e-13 77.4 99 42.4
Potri.014G082600 Populus trichocarpa HOM05D005367 ORTHO05D006328 9.7e-13 77.0 111 45.0
Manes.01G258500 Manihot esculenta HOM05D005367 ORTHO05D006328 1.3e-12 76.6 112 45.5
Glyma.18G231900 Glycine max HOM05D005367 ORTHO05D006328 1.7e-12 76.3 127 38.6
Ciclev10021865m.g Citrus clementina HOM05D005367 ORTHO05D006328 2.2e-12 75.9 109 41.3
Dinv43805 Davidia involucrata HOM05D005367 ORTHO05D006328 2.8e-12 75.5 116 38.8
TWI14G0016 Tripterygium wilfordii HOM05D005367 ORTHO05D006328 2.8e-12 75.5 117 39.3
Cfa003939 Carpinus fangiana HOM05D005367 ORTHO05D006328 3.7e-12 75.1 129 38.8
Gohir.D11G092400 Gossypium hirsutum HOM05D005367 ORTHO05D006328 6.3e-12 74.3 123 39.0
Gorai.007G098700 Gossypium raimondii HOM05D005367 ORTHO05D006328 6.3e-12 74.3 123 39.0
PGR042G0868 Punica granatum HOM05D005367 ORTHO05D006328 8.2e-12 73.9 102 41.2
Lalb_Chr01g0011531 Lupinus albus HOM05D005367 ORTHO05D006328 1.1e-11 73.6 103 41.7
PGR031G3282 Punica granatum HOM05D005367 ORTHO05D006328 1.1e-11 73.6 116 40.5
Eucgr.E00158 Eucalyptus grandis HOM05D005367 ORTHO05D006328 1.4e-11 73.2 101 44.6
Nn1g01501 Nelumbo nucifera HOM05D005367 ORTHO05D006328 2.4e-11 72.4 119 35.3
CiPaw.02G029900 Carya illinoinensis HOM05D005367 ORTHO05D006328 3.1e-11 72.0 126 36.5
Gohir.D08G152300 Gossypium hirsutum HOM05D005367 ORTHO05D006328 3.1e-11 72.0 118 39.0
Gorai.004G158200 Gossypium raimondii HOM05D005367 ORTHO05D006328 3.1e-11 72.0 118 39.0
Lalb_Chr24g0401631 Lupinus albus HOM05D005367 ORTHO05D006328 3.1e-11 72.0 103 40.8
Nitab4.5_0001702g0150 Nicotiana tabacum HOM05D005367 ORTHO05D006328 3.1e-11 72.0 116 39.7
Cpa.g.sc18.245 Carica papaya HOM05D005367 ORTHO05D006328 9.1e-11 70.5 126 36.5
Ciclev10006075m.g Citrus clementina HOM05D005367 ORTHO05D006328 9.1e-11 70.5 100 40.0
Gohir.A08G130800 Gossypium hirsutum HOM05D005367 ORTHO05D006328 9.1e-11 70.5 118 39.0
Manes.06G148200 Manihot esculenta HOM05D005367 ORTHO05D006328 9.1e-11 70.5 116 37.1
Gohir.A11G088100 Gossypium hirsutum HOM05D005367 ORTHO05D006328 1.6e-10 69.7 120 37.5
Hma1.2p1_0001F.1_g001380 Hydrangea macrophylla HOM05D005367 ORTHO05D006328 1.6e-10 69.7 111 39.6
MSTRG.20826 Avicennia marina HOM05D005367 ORTHO05D006328 2.6e-10 68.9 103 41.7
Nitab4.5_0008050g0010 Nicotiana tabacum HOM05D005367 ORTHO05D006328 2.6e-10 68.9 116 38.8
TAR375G0799 Trochodendron aralioides HOM05D005367 ORTHO05D006328 2.6e-10 68.9 121 38.0
TAR636G2389 Trochodendron aralioides HOM05D003133 ORTHO05D003642 2.6e-10 68.9 125 36.8
Manes.05G036200 Manihot esculenta HOM05D005367 ORTHO05D006328 3.5e-10 68.6 113 40.7
Cc02_g37850 Coffea canephora HOM05D005367 ORTHO05D006328 4.5e-10 68.2 66 48.5
Sopen05g028210 Solanum pennellii HOM05D005367 ORTHO05D006328 4.5e-10 68.2 120 37.5
Lj1g0004821 Lotus japonicus HOM05D005367 ORTHO05D006328 5.9e-10 67.8 87 47.1
PGSC0003DMG400021656 Solanum tuberosum HOM05D005367 ORTHO05D006328 5.9e-10 67.8 119 37.0
ClCG06G003800 Citrullus lanatus HOM05D005367 ORTHO05D006328 7.7e-10 67.4 63 54.0
CsaV3_6G000470 Cucumis sativus L. HOM05D005367 ORTHO05D006328 7.7e-10 67.4 63 54.0
Sed0017642 Sechium edule HOM05D005367 ORTHO05D006328 7.7e-10 67.4 104 41.3
Sc01g0003360 Simmondsia chinensis HOM05D005367 ORTHO05D006328 7.7e-10 67.4 125 36.8
Eucgr.D02282 Eucalyptus grandis HOM05D005367 ORTHO05D006328 1.0e-09 67.0 118 39.0
Peaxi162Scf00191g01425 Petunia axillaris HOM05D005367 ORTHO05D006328 1.0e-09 67.0 123 38.2
SGA_v2.0_scaffold11G05663 Striga asiatica HOM05D000368 ORTHO05D006328 1.0e-09 67.0 97 41.2
Solyc05g049880.3 Solanum lycopersicum HOM05D005367 ORTHO05D006328 1.7e-09 66.2 74 51.4
MELO3C021217.2 Cucumis melo HOM05D005367 ORTHO05D006328 2.9e-09 65.5 108 36.1
Atru.chr1.440 Acer truncatum HOM05D005367 ORTHO05D006328 3.8e-09 65.1 107 41.1
Prupe.2G295600 Prunus persica HOM05D005367 ORTHO05D006328 3.8e-09 65.1 114 36.0
SalBow3G2019 Salvia bowleyana HOM05D005367 ORTHO05D006328 3.8e-09 65.1 96 40.6
arahy.Tifrunner.gnm1.ann1.D8DQXR Arachis hypogaea HOM05D005367 ORTHO05D006328 5.0e-09 64.7 107 38.3
Oeu056369.1 Olea europaea HOM05D005367 ORTHO05D006328 5.0e-09 64.7 95 37.9
TPR.G37815 Trifolium pratense HOM05D005367 ORTHO05D006328 5.0e-09 64.7 92 35.9
VMungo1383G2792 Vigna mungo HOM05D005367 ORTHO05D006328 5.0e-09 64.7 95 43.2
Ca_07909_v3 Cicer arietinum L. HOM05D005367 ORTHO05D006328 8.5e-09 63.9 92 38.0
VMungo1383G2823 Vigna mungo HOM05D005367 ORTHO05D006328 8.5e-09 63.9 98 39.8
RcHm_v2.0_Chr1g0377581 Rosa chinensis HOM05D005367 ORTHO05D006328 1.1e-08 63.5 117 36.8
Phvul.008G065800 Phaseolus vulgaris HOM05D005367 ORTHO05D006328 1.5e-08 63.2 101 41.6
arahy.Tifrunner.gnm1.ann1.G5US7K Arachis hypogaea HOM05D005367 ORTHO05D006328 1.9e-08 62.8 107 37.4
Lj9A582T87 Lonicera japonica HOM05D005367 ORTHO05D006328 1.9e-08 62.8 108 37.0
Duzib205G1257 Durio zibethinus HOM05D005367 ORTHO05D006328 3.2e-08 62.0 126 32.5
Medtr7g077380 Medicago truncatula HOM05D005367 ORTHO05D006328 3.2e-08 62.0 96 37.5
THA.LOC104801446 Tarenaya hassleriana HOM05D005367 ORTHO05D006328 3.2e-08 62.0 106 35.8
MD01G1202200 Malus domestica HOM05D005367 ORTHO05D006328 7.2e-08 60.8 120 35.0
vmacro13291 Vaccinium macrocarpon HOM05D005367 ORTHO05D006328 9.4e-08 60.5 100 37.0
Aa31LG1G11110 Aethionema arabicum HOM05D005367 ORTHO05D006328 1.6e-07 59.7 96 35.4
EL10Ac1g00429 Beta vulgaris HOM05D005367 ORTHO05D006328 1.6e-07 59.7 105 35.2
AUR62022549 Chenopodium quinoa HOM05D005367 ORTHO05D006328 2.1e-07 59.3 105 38.1
Nn6g33454 Nelumbo nucifera HOM05D005367 ORTHO05D006328 2.1e-07 59.3 114 33.3
Psat3g109400 Pisum sativum HOM05D005367 ORTHO05D006328 2.7e-07 58.9 91 38.5
COL.COLO4_14330 Corchorus olitorius HOM05D005367 ORTHO05D006328 3.6e-07 58.5 62 45.2
Migut.B01742 Erythranthe guttata HOM05D005367 ORTHO05D006328 3.6e-07 58.5 105 35.2
AUR62004342 Chenopodium quinoa HOM05D005367 ORTHO05D006328 4.7e-07 58.2 106 36.8
unitig_61.g26388 Utricularia gibba HOM05D005367 ORTHO05D006328 4.7e-07 58.2 98 37.8
FAN10G3657 Fragaria x ananassa HOM05D005367 ORTHO05D006328 6.1e-07 57.8 109 35.8
Potri.015G145000 Populus trichocarpa HOM05D005367 ORTHO05D006328 8.0e-07 57.4 103 33.0
CARHR000590 Cardamine hirsuta HOM05D005367 ORTHO05D006328 1.0e-06 57.0 109 34.9
FvH4_7g29600 Fragaria vesca HOM05D005367 ORTHO05D006328 1.0e-06 57.0 37 62.2
FAN06G3705 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.0e-06 57.0 37 62.2
FAN06G4288 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.0e-06 57.0 37 62.2
Hund16930 Selenicereus undatus HOM05D005367 ORTHO05D006328 1.0e-06 57.0 47 53.2
Ah.05g180710 Amaranthus hybridus HOM05D005367 ORTHO05D006328 1.4e-06 56.6 68 48.5
Aqoxy7G00339 Aquilegia oxysepala HOM05D005367 ORTHO05D006328 1.4e-06 56.6 67 47.8
FAN03G1577 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.3e-06 55.8 118 33.1
vmacro06668 Vaccinium macrocarpon HOM05D005367 ORTHO05D006328 3.0e-06 55.5 114 32.5
PSO782G1827 Papaver somniferum HOM05D005367 ORTHO05D006328 4.0e-06 55.1 117 33.3
PSO478G0766 Papaver somniferum HOM05D005367 ORTHO05D006328 5.2e-06 54.7 119 33.6
ECA234G3275 Erigeron canadensis HOM05D005367 ORTHO05D006328 6.7e-06 54.3 105 35.2
FAN10G4254 Fragaria x ananassa HOM05D005367 ORTHO05D006328 6.7e-06 54.3 118 33.1


User provided reference genes

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