Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G1549 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1710.7 857 100.0
FvH4_7g06400 Fragaria vesca HOM05D004192 ORTHO05D004917 0.0e+00 1699.5 857 99.4
FAN06G5118 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1690.6 885 96.6
FAN01G1656 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1661.7 857 97.0
FAN03G2327 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1646.3 857 97.0
RcHm_v2.0_Chr1g0334491 Rosa chinensis HOM05D004192 ORTHO05D004917 0.0e+00 1530.8 859 90.2
MD07G1072600 Malus domestica HOM05D004192 ORTHO05D004917 0.0e+00 1389.0 858 81.8
MD02G1244600 Malus domestica HOM05D004192 ORTHO05D004917 0.0e+00 1376.3 862 81.7
Prupe.2G090700 Prunus persica HOM05D004192 ORTHO05D004917 0.0e+00 1328.9 769 86.9
CANSAT56G0904 Cannabis sativa HOM05D004192 ORTHO05D004917 0.0e+00 1323.9 860 77.8
CSS0020257 Camellia sinensis var. sinensis HOM05D004192 ORTHO05D004917 0.0e+00 1319.7 868 77.4
Thecc.10G097700 Theobroma cacao HOM05D004192 ORTHO05D004917 0.0e+00 1313.1 861 77.0
Dinv31284 Davidia involucrata HOM05D004192 ORTHO05D004917 0.0e+00 1310.0 862 78.1
COL.COLO4_34171 Corchorus olitorius HOM05D004192 ORTHO05D004917 0.0e+00 1306.2 863 76.7
TWI38G0502 Tripterygium wilfordii HOM05D004192 ORTHO05D004917 0.0e+00 1295.4 851 76.7
Gorai.008G097500 Gossypium raimondii HOM05D004192 ORTHO05D004917 0.0e+00 1281.2 849 75.1
Eucgr.J01026 Eucalyptus grandis HOM05D004192 ORTHO05D004917 0.0e+00 1276.2 840 76.5
Gohir.A12G088900 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1275.8 849 75.0
PGR044G0968 Punica granatum HOM05D004192 ORTHO05D004917 0.0e+00 1274.6 855 76.1
ClCG08G008030 Citrullus lanatus HOM05D004192 ORTHO05D004917 0.0e+00 1274.2 863 75.4
MELO3C019875.2 Cucumis melo HOM05D004192 ORTHO05D004917 0.0e+00 1268.8 865 75.0
CsaV3_2G032910 Cucumis sativus L. HOM05D004192 ORTHO05D004917 0.0e+00 1266.5 866 74.7
Duzib114G0707 Durio zibethinus HOM05D004192 ORTHO05D004917 0.0e+00 1262.3 823 78.1
Phvul.007G105800 Phaseolus vulgaris HOM05D004192 ORTHO05D004917 0.0e+00 1260.0 856 73.5
Potri.008G026900 Populus trichocarpa HOM05D004192 ORTHO05D004917 0.0e+00 1256.9 860 74.7
Cc02_g10300 Coffea canephora HOM05D004192 ORTHO05D004917 0.0e+00 1255.7 857 74.2
Potri.010G233600 Populus trichocarpa HOM05D004192 ORTHO05D004917 0.0e+00 1251.1 855 74.3
Sed0026233 Sechium edule HOM05D004192 ORTHO05D004917 0.0e+00 1250.0 874 73.0
Lalb_Chr02g0151281 Lupinus albus HOM05D004192 ORTHO05D004917 0.0e+00 1249.2 856 73.7
Duzib128G0631 Durio zibethinus HOM05D004192 ORTHO05D004917 0.0e+00 1245.7 862 74.5
arahy.Tifrunner.gnm1.ann1.CA0PQ2 Arachis hypogaea HOM05D004192 ORTHO05D004917 0.0e+00 1236.9 856 73.6
Gohir.A01G129200 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1234.9 853 74.6
VMungo0720G1942 Vigna mungo HOM05D004192 ORTHO05D004917 0.0e+00 1234.2 861 72.6
Lsat_1_v5_gn_8_23081 Lactuca sativa HOM05D004192 ORTHO05D004917 0.0e+00 1233.8 858 72.1
CiPaw.13G035500 Carya illinoinensis HOM05D004192 ORTHO05D004917 0.0e+00 1231.5 854 73.7
Gohir.D01G118800 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1229.2 853 74.2
Gorai.002G144900 Gossypium raimondii HOM05D004192 ORTHO05D004917 0.0e+00 1227.2 853 74.1
Glyma.10G201300 Glycine max HOM05D004192 ORTHO05D004917 0.0e+00 1225.3 859 71.7
Sabra08G0018400 Salix brachista HOM05D004192 ORTHO05D004917 0.0e+00 1223.8 888 71.4
Gohir.D12G087300 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1220.3 849 72.7
Nn6g35085 Nelumbo nucifera HOM05D004192 ORTHO05D004917 0.0e+00 1216.8 833 73.6
Lj5g0013826 Lotus japonicus HOM05D004192 ORTHO05D004917 0.0e+00 1214.1 851 73.2
Manes.10G054700 Manihot esculenta HOM05D004192 ORTHO05D004917 0.0e+00 1213.7 772 79.3
ECA233G2766 Erigeron canadensis HOM05D004192 ORTHO05D004917 0.0e+00 1211.1 858 71.1
Hund22302 Selenicereus undatus HOM05D004192 ORTHO05D004917 0.0e+00 1209.5 856 71.6
Migut.F01661 Erythranthe guttata HOM05D004192 ORTHO05D004917 0.0e+00 1208.0 866 71.8
Peaxi162Scf00398g00058 Petunia axillaris HOM05D004192 ORTHO05D004917 0.0e+00 1208.0 866 71.4
Rhsim03G0109700 Rhododendron simsii HOM05D004192 ORTHO05D004917 0.0e+00 1204.5 965 66.9
THA.LOC104816452 Tarenaya hassleriana HOM05D004192 ORTHO05D004917 0.0e+00 1203.7 863 72.2
TAR623G0905 Trochodendron aralioides HOM05D004192 ORTHO05D004917 0.0e+00 1200.3 861 72.0
HanXRQChr08g0218151 Helianthus annuus HOM05D004192 ORTHO05D004917 0.0e+00 1199.9 864 70.1
MSTRG.8112 Avicennia marina HOM05D004192 ORTHO05D004917 0.0e+00 1198.7 856 72.7
Lalb_Chr21g0313171 Lupinus albus HOM05D004192 ORTHO05D004917 0.0e+00 1197.6 856 71.8
DCAR_019044 Daucus carota HOM05D004192 ORTHO05D004917 0.0e+00 1196.0 853 71.9
EL10Ac4g08605 Beta vulgaris HOM05D004192 ORTHO05D004917 0.0e+00 1191.8 837 70.4
Psat6g175320 Pisum sativum HOM05D004192 ORTHO05D004917 0.0e+00 1188.3 853 70.8
Ca_10484_v3 Cicer arietinum L. HOM05D004192 ORTHO05D004917 0.0e+00 1186.4 855 71.0
HanXRQChr12g0368431 Helianthus annuus HOM05D004192 ORTHO05D004917 0.0e+00 1185.6 862 70.4
AT3G10550 Arabidopsis thaliana HOM05D004192 ORTHO05D004917 0.0e+00 1182.2 858 70.3
Nn2g13965 Nelumbo nucifera HOM05D004192 ORTHO05D004917 0.0e+00 1181.4 860 70.8
THA.LOC104823194 Tarenaya hassleriana HOM05D004192 ORTHO05D004917 0.0e+00 1181.4 859 71.2
Thhalv10020062m.g Eutrema salsugineum HOM05D004192 ORTHO05D004917 0.0e+00 1180.6 854 70.5
AL3G21970 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 0.0e+00 1179.1 859 70.1
Carub.0003s0979 Capsella rubella HOM05D004192 ORTHO05D004917 0.0e+00 1174.8 856 70.1
Sopen11g003530 Solanum pennellii HOM05D004192 ORTHO05D004917 0.0e+00 1173.3 848 69.3
GSVIVG01034690001 Vitis vinifera HOM05D004192 ORTHO05D004917 0.0e+00 1172.9 769 78.0
Sabra10G0181200 Salix brachista HOM05D004192 ORTHO05D004917 0.0e+00 1172.5 934 66.4
Solyc11g007670.3 Solanum lycopersicum HOM05D004192 ORTHO05D004917 0.0e+00 1172.5 848 69.5
Sp3g08830 Schrenkiella parvula HOM05D004192 ORTHO05D004917 0.0e+00 1172.1 858 70.3
Haze_02630 Corylus avellana HOM05D004192 ORTHO05D004917 0.0e+00 1169.1 1015 63.3
Sc20g0001360 Simmondsia chinensis HOM05D004192 ORTHO05D004917 0.0e+00 1166.4 834 71.1
Glyma.20G189100 Glycine max HOM05D004192 ORTHO05D004917 0.0e+00 1166.0 865 69.1
Aqoxy1G00968 Aquilegia oxysepala HOM05D004192 ORTHO05D004917 0.0e+00 1165.6 846 70.7
PSO384G3766 Papaver somniferum HOM05D004192 ORTHO05D004917 0.0e+00 1163.3 876 68.9
PSO339G1524 Papaver somniferum HOM05D004192 ORTHO05D004917 0.0e+00 1158.7 876 68.9
SGA_v2.0_scaffold62G21320 Striga asiatica HOM05D004192 ORTHO05D004917 0.0e+00 1158.3 918 65.9
TPR.G2517 Trifolium pratense HOM05D004192 ORTHO05D004917 0.0e+00 1158.3 929 66.3
CSS0018543 Camellia sinensis var. sinensis HOM05D004192 ORTHO05D004917 0.0e+00 1156.0 731 79.1
Aa31LG3G3400 Aethionema arabicum HOM05D004192 ORTHO05D004917 0.0e+00 1147.5 865 69.5
Sed0024945 Sechium edule HOM05D004192 ORTHO05D004917 0.0e+00 1142.9 765 75.2
Thhalv10012689m.g Eutrema salsugineum HOM05D004192 ORTHO05D004917 0.0e+00 1132.5 861 68.2
BcaNung05805 Brassica carinata HOM05D004192 ORTHO05D004917 0.0e+00 1126.3 861 67.7
BolC1t05384H Brassica oleracea HOM05D004192 ORTHO05D004917 0.0e+00 1126.3 861 67.7
Lj3A933G36 Lonicera japonica HOM05D004192 ORTHO05D004917 0.0e+00 1124.4 875 68.3
Ah.04g163610 Amaranthus hybridus HOM05D004192 ORTHO05D004917 0.0e+00 1120.5 851 67.1
AL6G14190 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 0.0e+00 1113.2 847 67.1
Sp6g38220 Schrenkiella parvula HOM05D004192 ORTHO05D004917 0.0e+00 1113.2 861 67.1
ATR0820G117 Amborella trichopoda HOM05D004192 ORTHO05D004917 0.0e+00 1112.1 839 67.3
Lj2C27G6 Lonicera japonica HOM05D004192 ORTHO05D004917 0.0e+00 1103.2 960 62.3
AT5G04540 Arabidopsis thaliana HOM05D004192 ORTHO05D004917 0.0e+00 1100.9 855 65.6
BraA01t04242Z Brassica rapa HOM05D004192 ORTHO05D004917 0.0e+00 1100.1 834 68.5
BolC9t59967H Brassica oleracea HOM05D004192 ORTHO05D004917 0.0e+00 1099.7 849 66.2
A10p31560 Brassica napus HOM05D004192 ORTHO05D004917 0.0e+00 1091.6 850 66.0
BraA10t45202Z Brassica rapa HOM05D004192 ORTHO05D004917 0.0e+00 1091.6 850 66.0
Nitab4.5_0000593g0020 Nicotiana tabacum HOM05D004192 ORTHO05D004917 0.0e+00 1087.8 871 65.3
C02p01980 Brassica napus HOM05D004192 ORTHO05D004917 0.0e+00 1085.9 858 66.3
HanXRQChr14g0456301 Helianthus annuus HOM05D004192 ORTHO05D004917 0.0e+00 1085.5 873 65.5
Carub.0006s0348 Capsella rubella HOM05D004192 ORTHO05D004917 0.0e+00 1084.7 848 65.9
BraA02t04817Z Brassica rapa HOM05D004192 ORTHO05D004917 0.0e+00 1083.6 852 66.5
BolC2t06155H Brassica oleracea HOM05D004192 ORTHO05D004917 0.0e+00 1081.6 858 66.2
Atru.chr12.952 Acer truncatum HOM05D004192 ORTHO05D004917 2.9e-311 1071.6 704 76.1
HPP92_001744 Vanilla planifolia HOM05D004192 ORTHO05D004917 2.0e-310 1068.9 831 65.5
CAN.G135.58 Capsicum annuum HOM05D004192 ORTHO05D004917 5.8e-310 1067.4 739 72.1
BcaC06g32164 Brassica carinata HOM05D004192 ORTHO05D004917 8.1e-296 1020.4 757 67.9
Aa31LG11G5410 Aethionema arabicum HOM05D004192 ORTHO05D004917 3.3e-289 998.4 847 61.9
BcaB04g21235 Brassica carinata HOM05D004192 ORTHO05D004917 7.6e-286 987.3 721 69.5
CDE06G2538 Ceratophyllum demersum HOM05D004192 ORTHO05D004917 6.7e-282 974.2 720 68.2
ECA238G3394 Erigeron canadensis HOM05D004192 ORTHO05D004917 1.9e-276 956.1 796 62.2
AUR62041537 Chenopodium quinoa HOM05D004192 ORTHO05D004917 2.5e-276 955.7 837 60.9
SEGI_16113 Sequoiadendron giganteum HOM05D004192 ORTHO05D004917 6.0e-275 951.0 845 59.5
AUR62041535 Chenopodium quinoa HOM05D004192 ORTHO05D004917 1.8e-274 949.5 836 60.8
PGSC0003DMG402027320 Solanum tuberosum HOM05D004192 ORTHO05D004917 4.3e-273 944.9 736 64.9
Actinidia18569 Actinidia chinensis HOM05D004192 ORTHO05D004917 9.4e-268 927.2 700 70.0
C09p72230 Brassica napus HOM05D004192 ORTHO05D004917 1.4e-255 886.7 676 67.3
CiPaw.14G028000 Carya illinoinensis HOM05D004192 ORTHO05D004917 1.5e-244 850.1 534 78.8
unitig_736.g22321 Utricularia gibba HOM05D004192 ORTHO05D004917 5.3e-239 831.6 856 54.6
Lsat_1_v5_gn_2_102840 Lactuca sativa HOM05D004192 ORTHO05D004917 4.8e-232 808.5 777 58.6
AagrBONN_evm.TU.Sc2ySwM_368.2559 Anthoceros agrestis HOM05D004192 ORTHO05D004917 3.3e-228 795.8 844 52.1
Medtr1g492590 Medicago truncatula HOM05D004192 ORTHO05D004917 6.8e-218 761.5 542 72.1
Pp3c22_15020 Physcomitrium patens HOM05D004192 ORTHO05D004917 3.1e-210 736.1 861 48.5
CARHR085080 Cardamine hirsuta HOM05D004192 ORTHO05D004917 5.2e-210 735.3 475 77.5
Pp3c18_20050 Physcomitrium patens HOM05D004192 ORTHO05D004917 7.5e-209 731.5 864 47.2
Mapoly0087s0031 Marchantia polymorpha HOM05D004192 ORTHO05D004917 8.3e-200 701.4 840 47.1
Nitab4.5_0003408g0020 Nicotiana tabacum HOM05D004192 ORTHO05D004917 3.2e-183 646.4 755 49.7
A01p41680 Brassica napus HOM05D004192 ORTHO05D004917 7.1e-183 645.2 461 72.5
SHI21315 Sapria himalayana HOM05D004192 ORTHO05D004917 1.4e-170 604.4 473 66.2
Os08g0556700 Oryza sativa ssp. japonica HOM05D004192 ORTHO05D004917 1.1e-167 594.7 537 60.5
Ciclev10031728m.g Citrus clementina HOM05D004192 ORTHO05D004917 4.2e-167 592.8 390 77.9
MBI17_g20218_MAGBIO Magnolia biondii HOM05D004192 ORTHO05D004917 3.0e-165 586.6 453 66.7
Hma1.2p1_0492F.1_g164750 Hydrangea macrophylla HOM05D004192 ORTHO05D004917 2.0e-161 573.9 384 75.5
vmacro07217 Vaccinium macrocarpon HOM05D004192 ORTHO05D004917 1.3e-155 554.7 489 62.6
SMO367G0225 Selaginella moellendorffii HOM05D004192 ORTHO05D004917 1.4e-154 551.2 859 40.4
CARHR208730 Cardamine hirsuta HOM05D004192 ORTHO05D004917 1.8e-154 550.8 468 60.9
Oeu026557.1 Olea europaea HOM05D004192 ORTHO05D004917 1.4e-143 514.6 742 44.2
Cpa.g.sc942.1 Carica papaya HOM05D004192 ORTHO05D004917 9.1e-130 468.8 301 76.4
Zm00001eb039660 Zea mays HOM05D004192 ORTHO05D004917 1.3e-128 464.9 459 56.2
arahy.Tifrunner.gnm1.ann1.VIL3TT Arachis hypogaea HOM05D004192 ORTHO05D004917 5.5e-127 459.5 314 74.5
Medtr1g092570 Medicago truncatula HOM05D004192 ORTHO05D004917 1.4e-122 444.9 315 72.1
AL3G45840 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 1.2e-121 441.8 366 65.6
CARHR085070 Cardamine hirsuta HOM05D004192 ORTHO05D004917 1.2e-121 441.8 390 59.0
MBI17_g20211_MAGBIO Magnolia biondii HOM05D004192 ORTHO05D004917 3.6e-118 430.3 356 65.2
SHI21312 Sapria himalayana HOM05D004192 ORTHO05D004917 1.9e-103 381.3 309 64.1
HanXRQChr14g0456291 Helianthus annuus HOM05D004192 ORTHO05D004917 1.6e-89 335.1 290 60.3
Oeu026556.1 Olea europaea HOM05D004192 ORTHO05D004917 5.1e-88 330.1 249 67.5
Hma1.2p1_0492F.1_g164740 Hydrangea macrophylla HOM05D004192 ORTHO05D004917 5.8e-84 316.6 200 76.5
Psat0s4326g0040 Pisum sativum HOM05D004192 ORTHO05D004917 4.8e-70 270.4 180 71.7
vmacro07216 Vaccinium macrocarpon HOM05D004192 ORTHO05D004917 5.6e-63 246.9 228 60.1
Zm00001eb215930 Zea mays HOM05D004192 ORTHO05D004917 1.1e-61 242.7 185 63.2
QL04p040652 Quercus lobata HOM05D004192 ORTHO05D004917 1.9e-58 231.9 299 49.2
Cpa.g.c33984 Carica papaya HOM05D004192 ORTHO05D004917 5.5e-58 230.3 159 76.1
Psat0s3097g0040 Pisum sativum HOM05D004192 ORTHO05D004917 5.8e-52 210.3 129 79.8
PGSC0003DMG401027320 Solanum tuberosum HOM05D004192 ORTHO05D004917 4.2e-42 177.6 157 62.4
Cfa026029 Carpinus fangiana HOM05D004192 ORTHO05D004917 7.2e-42 176.8 599 27.5
Actinidia18568 Actinidia chinensis HOM05D004192 ORTHO05D004917 7.2e-34 150.2 132 61.4
QL04p040713 Quercus lobata HOM05D004192 ORTHO05D004917 3.3e-31 141.4 124 63.7
TAR371G0071 Trochodendron aralioides HOM05D004192 ORTHO05D004917 9.7e-31 139.8 128 62.5
SHI21313 Sapria himalayana HOM05D004192 ORTHO05D004917 3.7e-30 137.9 72 94.4
BcaB02g10205 Brassica carinata HOM05D004192 ORTHO05D004917 7.7e-28 130.2 115 61.7
RcHm_v2.0_Chr4g0433221 Rosa chinensis HOM05D004192 ORTHO05D004917 4.2e-26 124.4 74 83.8
Oeu021819.1 Olea europaea HOM05D004192 ORTHO05D004917 5.9e-20 104.0 84 67.9
RcHm_v2.0_Chr0c16g0499861 Rosa chinensis HOM05D004192 ORTHO05D004917 2.9e-19 101.7 60 85.0
Rhsim01G0150300 Rhododendron simsii HOM05D004192 ORTHO05D004917 2.6e-15 88.6 91 54.9
Nitab4.5_0003408g0010 Nicotiana tabacum HOM05D004192 ORTHO05D004917 3.7e-14 84.7 85 58.8
RcHm_v2.0_Chr2g0132831 Rosa chinensis HOM05D004192 ORTHO05D004917 8.2e-14 83.6 46 89.1
Lsat_1_v5_gn_6_80241 Lactuca sativa HOM05D004192 ORTHO05D004917 1.8e-08 65.9 49 71.4
Hma1.2p1_0492F.1_g164730 Hydrangea macrophylla HOM05D011107 ORTHO05D012795 3.0e-08 65.1 79 58.2
TAR633G0581 Trochodendron aralioides HOM05D004192 ORTHO05D004917 5.2e-08 64.3 60 56.7
AL4G18520 Arabidopsis lyrata HOM05D003414 ORTHO05D003913 6.8e-08 63.9 35 77.1
AL4G19510 Arabidopsis lyrata HOM05D002764 ORTHO05D002960 6.8e-08 63.9 35 77.1
AL5G23210 Arabidopsis lyrata HOM05D063572 ORTHO05D002960 6.8e-08 63.9 35 77.1


User provided reference genes

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