Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G1525 Fragaria x ananassa HOM05D002637 ORTHO05D009046 4.6e-80 301.2 156 100.0
FAN10G0921 Fragaria x ananassa HOM05D002637 ORTHO05D009046 2.4e-57 225.7 150 84.0
FAN03G2438 Fragaria x ananassa HOM05D002637 ORTHO05D009046 1.2e-43 180.3 180 62.2
FAN06G2425 Fragaria x ananassa HOM05D000001 ORTHO05D009896 1.7e-42 176.4 180 60.0
FAN01G0925 Fragaria x ananassa HOM05D002637 ORTHO05D009046 8.4e-42 174.1 180 59.4
FAN06G1198 Fragaria x ananassa HOM05D000001 ORTHO05D009896 1.4e-41 173.3 180 59.4
FvH4_7g09940 Fragaria vesca HOM05D002637 ORTHO05D009046 6.7e-39 164.5 173 59.5
RcHm_v2.0_Chr1g0347501 Rosa chinensis HOM05D002637 ORTHO05D009046 8.5e-26 120.9 174 44.3
Actinidia33504 Actinidia chinensis HOM05D002637 ORTHO05D009046 4.2e-25 118.6 172 40.1
Prupe.2G128200 Prunus persica HOM05D002637 ORTHO05D009046 7.2e-25 117.9 176 42.0
Manes.12G109800 Manihot esculenta HOM05D002637 ORTHO05D009046 9.4e-25 117.5 174 42.5
Cc02_g25010 Coffea canephora HOM05D002637 ORTHO05D009046 4.7e-24 115.2 178 39.9
Migut.B01543 Erythranthe guttata HOM05D002637 ORTHO05D009046 3.0e-23 112.5 174 38.5
MD07G1104600 Malus domestica HOM05D002637 ORTHO05D009046 3.9e-23 112.1 174 40.2
vmacro21056 Vaccinium macrocarpon HOM05D002637 ORTHO05D009046 5.1e-23 111.7 174 37.9
PGR042G3993 Punica granatum HOM05D002637 ORTHO05D009046 1.5e-22 110.2 173 41.0
SGA_v2.0_scaffold153G36910 Striga asiatica HOM05D002637 ORTHO05D008095 2.6e-22 109.4 174 38.5
Aa31LG6G14300 Aethionema arabicum HOM05D002637 ORTHO05D009046 3.3e-22 109.0 150 38.7
MD07G1105300 Malus domestica HOM05D002637 ORTHO05D009046 5.7e-22 108.2 174 38.5
DCAR_029750 Daucus carota HOM05D002637 ORTHO05D000193 7.4e-22 107.8 174 37.9
Dinv43628 Davidia involucrata HOM05D002637 ORTHO05D009046 2.2e-21 106.3 174 36.8
Eucgr.E01572 Eucalyptus grandis HOM05D002637 ORTHO05D009046 3.7e-21 105.5 166 39.8
EL10Ac1g00772 Beta vulgaris HOM05D002637 ORTHO05D009046 1.4e-20 103.6 174 37.4
ECA234G1562 Erigeron canadensis HOM05D002637 ORTHO05D009046 1.8e-20 103.2 177 36.7
Potri.007G051200 Populus trichocarpa HOM05D002637 ORTHO05D009046 4.1e-20 102.1 171 35.7
HanXRQChr16g0520331 Helianthus annuus HOM05D002637 ORTHO05D009046 7.0e-20 101.3 173 37.6
Sabra07G0045200 Salix brachista HOM05D002328 ORTHO05D002433 7.0e-20 101.3 172 34.3
CARHR245840 Cardamine hirsuta HOM05D002637 ORTHO05D009046 2.0e-19 99.8 169 34.9
AT4G37445 Arabidopsis thaliana HOM05D002637 ORTHO05D009046 2.6e-19 99.4 168 35.1
BcaNung03660 Brassica carinata HOM05D002637 ORTHO05D009046 2.6e-19 99.4 166 36.1
Sp7g35140 Schrenkiella parvula HOM05D002637 ORTHO05D009046 2.6e-19 99.4 168 34.5
Atru.chr3.227 Acer truncatum HOM05D002637 ORTHO05D009046 3.5e-19 99.0 175 34.9
AL7G13350 Arabidopsis lyrata HOM05D002637 ORTHO05D009046 3.5e-19 99.0 168 35.1
Thhalv10026444m.g Eutrema salsugineum HOM05D002637 ORTHO05D009046 3.5e-19 99.0 168 34.5
Lsat_1_v5_gn_4_46620 Lactuca sativa HOM05D002637 ORTHO05D009046 3.5e-19 99.0 175 37.1
Aqoxy3G02748 Aquilegia oxysepala HOM05D002637 ORTHO05D009046 4.5e-19 98.6 171 36.3
Sc02g0003060 Simmondsia chinensis HOM05D002637 ORTHO05D009046 4.5e-19 98.6 164 36.6
BcaNung05079 Brassica carinata HOM05D002637 ORTHO05D009046 7.7e-19 97.8 168 34.5
QL04p030668 Quercus lobata HOM05D002637 ORTHO05D009046 7.7e-19 97.8 170 37.6
MSTRG.17133 Avicennia marina HOM05D002637 ORTHO05D009046 1.0e-18 97.4 174 36.8
Lj3g0027924 Lotus japonicus HOM05D002637 ORTHO05D009046 1.0e-18 97.4 173 35.8
Manes.13G115300 Manihot esculenta HOM05D002637 ORTHO05D009046 1.0e-18 97.4 174 35.6
Psat4g225240 Pisum sativum HOM05D002637 ORTHO05D009046 1.0e-18 97.4 172 34.3
Cfa011083 Carpinus fangiana HOM05D002637 ORTHO05D009046 1.3e-18 97.1 176 37.5
Rhsim01G0139600 Rhododendron simsii HOM05D002637 ORTHO05D009046 1.3e-18 97.1 116 46.6
Ciclev10026646m.g Citrus clementina HOM05D002637 ORTHO05D009046 2.2e-18 96.3 179 38.0
Thecc.01G067000 Theobroma cacao HOM05D002637 ORTHO05D009046 2.2e-18 96.3 175 36.0
Carub.0007s0284 Capsella rubella HOM05D002637 ORTHO05D009046 3.8e-18 95.5 168 34.5
Duzib187G0274 Durio zibethinus HOM05D002637 ORTHO05D009046 3.8e-18 95.5 174 37.9
C01p01670 Brassica napus HOM05D002637 ORTHO05D009046 5.0e-18 95.1 180 33.9
BolC1t00161H Brassica oleracea HOM05D002637 ORTHO05D009046 5.0e-18 95.1 180 33.9
Haze_02819 Corylus avellana HOM05D002637 ORTHO05D009046 5.0e-18 95.1 171 36.3
Duzib147G1684 Durio zibethinus HOM05D002637 ORTHO05D009046 6.5e-18 94.7 177 35.6
AUR62023418 Chenopodium quinoa HOM05D000001 ORTHO05D009896 8.5e-18 94.4 173 34.7
Medtr8g006765 Medicago truncatula HOM05D002637 ORTHO05D009046 8.5e-18 94.4 173 32.4
TPR.G33150 Trifolium pratense HOM05D002637 ORTHO05D009046 8.5e-18 94.4 173 32.4
A01p01510 Brassica napus HOM05D002637 ORTHO05D009046 1.1e-17 94.0 178 34.3
BraA01t00144Z Brassica rapa HOM05D002637 ORTHO05D009046 1.4e-17 93.6 178 34.3
Lalb_Chr13g0290561 Lupinus albus HOM05D002637 ORTHO05D009046 1.4e-17 93.6 175 32.6
Oeu063229.1 Olea europaea HOM05D002637 ORTHO05D009046 4.2e-17 92.0 174 33.3
unitig_8.g3841 Utricularia gibba HOM05D002637 ORTHO05D008095 4.2e-17 92.0 170 33.5
TPR.G12142 Trifolium pratense HOM05D002637 ORTHO05D009046 5.5e-17 91.7 177 35.6
TWI53G0102 Tripterygium wilfordii HOM05D002637 ORTHO05D009046 9.4e-17 90.9 174 33.9
COL.COLO4_11517 Corchorus olitorius HOM05D002637 ORTHO05D009046 1.2e-16 90.5 168 34.5
Gorai.011G107300 Gossypium raimondii HOM05D002637 ORTHO05D009046 1.2e-16 90.5 168 37.5
PSO063G5174 Papaver somniferum HOM05D002637 ORTHO05D009046 1.2e-16 90.5 161 37.9
Ca_14060_v3 Cicer arietinum L. HOM05D002637 ORTHO05D009046 1.6e-16 90.1 172 33.1
THA.LOC104807614 Tarenaya hassleriana HOM05D002637 ORTHO05D009046 1.6e-16 90.1 177 31.6
TAR629G3341 Trochodendron aralioides HOM05D002637 ORTHO05D009046 1.6e-16 90.1 145 37.2
Nitab4.5_0003696g0080 Nicotiana tabacum HOM05D002637 ORTHO05D009046 6.1e-16 88.2 167 35.9
TAR629G0766 Trochodendron aralioides HOM05D002637 ORTHO05D009046 1.8e-15 86.7 161 34.2
A01p01520 Brassica napus HOM05D002637 ORTHO05D009046 3.0e-15 85.9 170 34.1
BraA01t00145Z Brassica rapa HOM05D002637 ORTHO05D009046 3.0e-15 85.9 170 34.1
arahy.Tifrunner.gnm1.ann1.TJ44DN Arachis hypogaea HOM05D002637 ORTHO05D009046 6.7e-15 84.7 174 33.9
arahy.Tifrunner.gnm1.ann1.P225XX Arachis hypogaea HOM05D002637 ORTHO05D009046 8.8e-15 84.3 174 32.8
Nn1g00869 Nelumbo nucifera HOM05D002637 ORTHO05D009046 8.8e-15 84.3 164 32.9
Psat3g194760 Pisum sativum HOM05D002637 ORTHO05D009046 1.1e-14 84.0 169 33.7
Hund17084 Selenicereus undatus HOM05D002637 ORTHO05D009046 1.1e-14 84.0 164 34.1
CiPaw.14G021200 Carya illinoinensis HOM05D002637 ORTHO05D009046 2.6e-14 82.8 171 32.2
Lj7A545G96 Lonicera japonica HOM05D002637 ORTHO05D009046 3.3e-14 82.4 131 39.7
CANSAT21G1080 Cannabis sativa HOM05D002637 ORTHO05D009046 4.4e-14 82.0 171 33.3
Cpa.g.sc6.62 Carica papaya HOM05D003561 ORTHO05D004351 4.4e-14 82.0 156 35.9
Lj1g0023703 Lotus japonicus HOM05D002637 ORTHO05D009046 4.4e-14 82.0 170 32.9
TAR629G0936 Trochodendron aralioides HOM05D002637 ORTHO05D009046 4.4e-14 82.0 170 32.4
AUR62013735 Chenopodium quinoa HOM05D002637 ORTHO05D009046 5.7e-14 81.6 124 41.1
Medtr4g094628 Medicago truncatula HOM05D002637 ORTHO05D009046 7.4e-14 81.3 178 31.5
Sopen01g036190 Solanum pennellii HOM05D002637 ORTHO05D009046 1.3e-13 80.5 181 30.4
BcaNung02947 Brassica carinata HOM05D002637 ORTHO05D009046 2.2e-13 79.7 159 35.2
VMungo0331G2001 Vigna mungo HOM05D002637 ORTHO05D009046 6.3e-13 78.2 168 30.4
RcHm_v2.0_Chr1g0347531 Rosa chinensis HOM05D002637 ORTHO05D009046 1.1e-12 77.4 48 79.2
Ca_04041_v3 Cicer arietinum L. HOM05D002637 ORTHO05D008095 1.8e-12 76.6 157 33.1
Ca_24158_v3 Cicer arietinum L. HOM05D002637 ORTHO05D009046 9.1e-12 74.3 117 35.0
Phvul.010G051600 Phaseolus vulgaris HOM05D002637 ORTHO05D009046 9.1e-12 74.3 170 30.0
Glyma.03G113700 Glycine max HOM05D002637 ORTHO05D009046 3.5e-11 72.4 170 28.8
SalBow5G5579 Salvia bowleyana HOM05D002637 ORTHO05D009046 4.5e-11 72.0 145 33.8
Ca_14062_v3 Cicer arietinum L. HOM05D000534 ORTHO05D009046 7.7e-11 71.2 117 33.3
Nitab4.5_0003553g0040 Nicotiana tabacum HOM05D002637 ORTHO05D009046 7.7e-11 71.2 55 61.8
GSVIVG01018259001 Vitis vinifera HOM05D002637 ORTHO05D009046 1.0e-10 70.9 128 35.2
Manes.13G115400 Manihot esculenta HOM05D002637 ORTHO05D009046 1.7e-10 70.1 144 33.3
TPR.G39072 Trifolium pratense HOM05D002637 ORTHO05D009046 2.2e-10 69.7 142 37.3
BcaNung03659 Brassica carinata HOM05D002637 ORTHO05D009046 2.9e-10 69.3 49 61.2
GSVIVG01018261001 Vitis vinifera HOM05D002637 ORTHO05D009046 2.9e-10 69.3 104 40.4
Atru.chr3.216 Acer truncatum HOM05D002637 ORTHO05D009046 6.5e-10 68.2 51 60.8
Peaxi162Scf00030g00043 Petunia axillaris HOM05D002637 ORTHO05D009046 1.5e-09 67.0 110 39.1
CSS0047370 Camellia sinensis var. sinensis HOM05D002637 ORTHO05D009046 1.9e-09 66.6 53 56.6
A01p01540 Brassica napus HOM05D002637 ORTHO05D009046 4.2e-09 65.5 49 59.2
BraA01t00146Z Brassica rapa HOM05D002637 ORTHO05D016052 4.2e-09 65.5 49 59.2
Phvul.008G046000 Phaseolus vulgaris HOM05D002637 ORTHO05D009046 1.6e-08 63.5 108 36.1
Glyma.07G113000 Glycine max HOM05D002637 ORTHO05D009046 2.3e-07 59.7 149 28.9
VMungo1383G0183 Vigna mungo HOM05D002637 ORTHO05D009046 4.0e-07 58.9 54 51.9
Glyma.18G252700 Glycine max HOM05D002637 ORTHO05D009046 4.4e-06 55.5 48 52.1


User provided reference genes

Program Settings