Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G1411 Fragaria x ananassa HOM05D006793 ORTHO05D003476 3.5e-272 941.0 483 100.0
FvH4_7g06800 Fragaria vesca HOM05D006793 ORTHO05D003476 2.2e-258 895.2 484 95.7
FAN06G1743 Fragaria x ananassa HOM05D006793 ORTHO05D003476 2.2e-258 895.2 484 95.7
FAN01G0293 Fragaria x ananassa HOM05D006793 ORTHO05D003476 5.3e-244 847.4 484 90.7
FAN03G3430 Fragaria x ananassa HOM05D006793 ORTHO05D003476 1.8e-231 805.8 441 95.0
RcHm_v2.0_Chr1g0336511 Rosa chinensis HOM05D006793 ORTHO05D003476 4.2e-209 731.5 482 80.7
MD02G1241700 Malus domestica HOM05D006793 ORTHO05D003476 1.0e-141 507.7 498 59.4
Prupe.2G095200 Prunus persica HOM05D006793 ORTHO05D003476 1.1e-132 477.6 494 56.9
MD07G1075000 Malus domestica HOM05D006793 ORTHO05D003476 2.1e-123 446.8 459 57.1
CANSAT56G4476 Cannabis sativa HOM05D006793 ORTHO05D003476 9.2e-87 325.1 508 46.7
Cfa001770 Carpinus fangiana HOM05D006793 ORTHO05D003476 2.8e-83 313.5 522 42.3
QL08p052921 Quercus lobata HOM05D006793 ORTHO05D003476 1.7e-80 304.3 513 42.1
Potri.008G029500 Populus trichocarpa HOM05D006793 ORTHO05D003476 2.0e-78 297.4 494 40.9
MD02G1237300 Malus domestica HOM05D006793 ORTHO05D003476 1.1e-76 291.6 495 41.2
Haze_16786 Corylus avellana HOM05D006793 ORTHO05D003476 1.9e-76 290.8 485 42.5
TAR636G1084 Trochodendron aralioides HOM05D006793 ORTHO05D003476 3.3e-76 290.0 490 41.2
Sabra08G0019600 Salix brachista HOM05D006793 ORTHO05D003476 6.2e-75 285.8 494 40.7
CiPaw.01G264600 Carya illinoinensis HOM05D006793 ORTHO05D003476 1.4e-74 284.6 517 39.7
Ciclev10031613m.g Citrus clementina HOM05D006793 ORTHO05D003476 2.9e-72 276.9 493 39.8
Duzib114G0110 Durio zibethinus HOM05D006793 ORTHO05D003476 4.1e-71 273.1 492 39.6
Phvul.007G141300 Phaseolus vulgaris HOM05D006793 ORTHO05D003476 5.4e-71 272.7 504 39.5
Atru.chr11.746 Acer truncatum HOM05D006793 ORTHO05D003476 2.1e-70 270.8 538 38.1
Lalb_Chr21g0313091 Lupinus albus HOM05D006793 ORTHO05D003476 2.1e-70 270.8 515 38.1
Gorai.002G144500 Gossypium raimondii HOM05D006793 ORTHO05D003476 2.7e-70 270.4 492 37.2
Duzib128G0427 Durio zibethinus HOM05D006793 ORTHO05D003476 7.8e-70 268.9 496 39.7
Gohir.D01G118500 Gossypium hirsutum HOM05D006793 ORTHO05D003476 7.8e-70 268.9 498 36.9
COL.COLO4_32868 Corchorus olitorius HOM05D006793 ORTHO05D003476 1.3e-69 268.1 546 37.2
Gohir.A01G128900 Gossypium hirsutum HOM05D006793 ORTHO05D003476 1.7e-69 267.7 496 36.9
Thecc.10G090800 Theobroma cacao HOM05D006793 ORTHO05D003476 6.6e-69 265.8 494 38.7
Manes.10G053400 Manihot esculenta HOM05D006793 ORTHO05D003476 4.3e-68 263.1 488 39.8
GSVIVG01005025001 Vitis vinifera HOM05D006793 ORTHO05D003476 2.8e-67 260.4 492 38.4
Rhsim03G0110800 Rhododendron simsii HOM05D006793 ORTHO05D003476 4.7e-67 259.6 525 37.7
Sed0017585 Sechium edule HOM05D006793 ORTHO05D003476 8.1e-67 258.8 493 41.2
TAR633G2614 Trochodendron aralioides HOM05D006793 ORTHO05D009315 1.8e-66 257.7 515 38.8
TAR476G0002 Trochodendron aralioides HOM05D006793 ORTHO05D003476 8.9e-66 255.4 515 38.8
Eucgr.G02731 Eucalyptus grandis HOM05D006793 ORTHO05D003476 2.6e-65 253.8 506 39.1
Lj5g0011528 Lotus japonicus HOM05D006793 ORTHO05D003476 1.3e-64 251.5 511 37.2
Lalb_Chr02g0151171 Lupinus albus HOM05D006793 ORTHO05D003476 8.3e-64 248.8 530 35.3
Manes.07G093300 Manihot esculenta HOM05D006793 ORTHO05D003476 3.2e-63 246.9 487 37.2
CsaV3_2G032770 Cucumis sativus L. HOM05D006793 ORTHO05D003476 7.1e-63 245.7 517 36.9
arahy.Tifrunner.gnm1.ann1.BT04C1 Arachis hypogaea HOM05D006793 ORTHO05D003476 1.0e-61 241.9 502 36.7
Sabra10G0179700 Salix brachista HOM05D006793 ORTHO05D003476 5.1e-61 239.6 500 37.6
arahy.Tifrunner.gnm1.ann1.U5ZVAW Arachis hypogaea HOM05D006793 ORTHO05D003476 1.1e-60 238.4 502 36.9
Hma1.2p1_0454F.1_g156300 Hydrangea macrophylla HOM05D006793 ORTHO05D003476 1.5e-60 238.0 500 37.0
Potri.010G231900 Populus trichocarpa HOM05D006793 ORTHO05D003476 2.5e-60 237.3 545 35.2
MELO3C019853.2 Cucumis melo HOM05D006793 ORTHO05D003476 5.6e-60 236.1 515 36.1
Glyma.20G190600 Glycine max HOM05D006793 ORTHO05D003476 9.6e-60 235.3 533 35.5
Actinidia06714 Actinidia chinensis HOM05D006793 ORTHO05D003476 1.6e-59 234.6 501 38.1
Nn2g13905 Nelumbo nucifera HOM05D006793 ORTHO05D003476 5.2e-58 229.6 500 36.8
VMungo0720G1705 Vigna mungo HOM05D006793 ORTHO05D003476 2.0e-57 227.6 517 35.4
Glyma.10G199900 Glycine max HOM05D006793 ORTHO05D003476 4.4e-57 226.5 533 34.5
PSO339G4934 Papaver somniferum HOM05D006793 ORTHO05D003476 2.2e-56 224.2 489 35.8
Aqoxy2G01557 Aquilegia oxysepala HOM05D006793 ORTHO05D003476 4.2e-55 219.9 524 32.8
Solyc11g007850.2 Solanum lycopersicum HOM05D006793 ORTHO05D003476 7.1e-55 219.2 541 32.7
PGR142G3005 Punica granatum HOM05D006793 ORTHO05D003476 2.7e-54 217.2 515 37.5
Dinv31270 Davidia involucrata HOM05D006793 ORTHO05D003476 3.5e-54 216.9 498 35.5
Sopen11g003710 Solanum pennellii HOM05D006793 ORTHO05D003476 3.5e-54 216.9 541 31.6
Cc02_g10490 Coffea canephora HOM05D006793 ORTHO05D003476 3.9e-53 213.4 618 29.9
PGSC0003DMG400027329 Solanum tuberosum HOM05D006793 ORTHO05D003476 3.9e-53 213.4 542 32.1
Nitab4.5_0006383g0010 Nicotiana tabacum HOM05D006793 ORTHO05D003476 5.1e-53 213.0 542 35.2
Nn6g35167 Nelumbo nucifera HOM05D006793 ORTHO05D003476 1.5e-52 211.5 490 32.4
PSO801G0244 Papaver somniferum HOM05D006793 ORTHO05D003476 2.5e-52 210.7 489 33.9
Migut.F01893 Erythranthe guttata HOM05D006793 ORTHO05D003476 3.3e-52 210.3 487 35.9
TWI38G2135 Tripterygium wilfordii HOM05D006793 ORTHO05D003476 7.3e-52 209.1 567 32.3
Peaxi162Scf00321g00037 Petunia axillaris HOM05D006793 ORTHO05D003476 9.6e-52 208.8 510 32.7
Nitab4.5_0000593g0350 Nicotiana tabacum HOM05D006793 ORTHO05D003476 2.8e-51 207.2 535 33.1
SalBow4G0791 Salvia bowleyana HOM05D006793 ORTHO05D003476 4.8e-51 206.5 514 35.2
ClCG08G007950 Citrullus lanatus HOM05D006793 ORTHO05D003476 5.3e-50 203.0 422 38.2
AUR62030173 Chenopodium quinoa HOM05D006793 ORTHO05D003476 1.2e-49 201.8 520 30.8
Dinv20859 Davidia involucrata HOM05D006793 ORTHO05D003476 4.4e-49 199.9 175 62.3
AUR62002713 Chenopodium quinoa HOM05D006793 ORTHO05D003476 9.9e-49 198.7 512 32.0
TPR.G37771 Trifolium pratense HOM05D006793 ORTHO05D003476 6.4e-48 196.1 558 31.0
EL10Ac8g19653 Beta vulgaris HOM05D006793 ORTHO05D003476 1.1e-47 195.3 517 34.6
THA.LOC104824314 Tarenaya hassleriana HOM05D006793 ORTHO05D003476 4.2e-47 193.4 555 31.4
DCAR_019058 Daucus carota HOM05D006793 ORTHO05D003476 6.0e-46 189.5 516 31.6
Medtr1g090853 Medicago truncatula HOM05D006793 ORTHO05D003476 1.0e-45 188.7 556 32.6
MSTRG.404 Avicennia marina HOM05D006793 ORTHO05D003476 1.3e-45 188.3 543 34.1
MSTRG.27506 Avicennia marina HOM05D006793 ORTHO05D003476 1.7e-45 188.0 544 32.4
Sc20g0001440 Simmondsia chinensis HOM05D006793 ORTHO05D003476 9.6e-44 182.2 277 42.2
SGA_v2.0_scaffold62G21362 Striga asiatica HOM05D006793 ORTHO05D003476 2.1e-43 181.0 510 31.6
Aa31LG10G7260 Aethionema arabicum HOM05D000145 ORTHO05D003476 3.1e-42 177.2 514 33.7
ECA233G3433 Erigeron canadensis HOM05D006793 ORTHO05D003476 3.1e-42 177.2 493 33.3
AT3G52170 Arabidopsis thaliana HOM05D006793 ORTHO05D003476 5.3e-42 176.4 526 29.8
Oeu060293.1 Olea europaea HOM05D006793 ORTHO05D003476 1.2e-41 175.3 543 32.0
Psat6g174040 Pisum sativum HOM05D006793 ORTHO05D003476 9.3e-39 165.6 174 54.6
Sp5g10100 Schrenkiella parvula HOM05D006793 ORTHO05D003476 2.7e-38 164.1 538 30.3
AL5G32750 Arabidopsis lyrata HOM05D006793 ORTHO05D003476 4.6e-38 163.3 532 30.5
Carub.0005s1853 Capsella rubella HOM05D006793 ORTHO05D003476 2.3e-37 161.0 516 30.8
CARHR161930 Cardamine hirsuta HOM05D006793 ORTHO05D003476 2.3e-37 161.0 498 31.7
Thhalv10010306m.g Eutrema salsugineum HOM05D006793 ORTHO05D003476 3.3e-36 157.1 519 29.3
BcaC02g09274 Brassica carinata HOM05D006793 ORTHO05D003476 1.6e-35 154.8 492 29.3
Lsat_1_v5_gn_8_22741 Lactuca sativa HOM05D006793 ORTHO05D003476 2.1e-35 154.5 200 47.5
MBI17_g07069_MAGBIO Magnolia biondii HOM05D006793 ORTHO05D003476 1.8e-34 151.4 532 28.6
Cpa.g.sc128.73 Carica papaya HOM05D006793 ORTHO05D003476 4.0e-34 150.2 177 46.9
Lsat_1_v5_gn_2_103100 Lactuca sativa HOM05D006793 ORTHO05D003476 3.4e-33 147.1 295 38.0
C04p40750 Brassica napus HOM05D000992 ORTHO05D006704 1.0e-32 145.6 499 29.3
BolC4t25659H Brassica oleracea HOM05D000992 ORTHO05D006704 1.0e-32 145.6 499 29.3
Sed0009649 Sechium edule HOM05D006793 ORTHO05D003476 1.7e-32 144.8 503 31.0
A03p48750 Brassica napus HOM05D006793 ORTHO05D003476 8.4e-32 142.5 501 29.5
A04p07200 Brassica napus HOM05D006793 ORTHO05D003476 1.9e-31 141.4 524 29.0
BraA03t13975Z Brassica rapa HOM05D006793 ORTHO05D003476 4.2e-31 140.2 501 29.3
BraA04t16415Z Brassica rapa HOM05D000992 ORTHO05D006704 7.9e-30 136.0 517 28.2
vmacro07208 Vaccinium macrocarpon HOM05D000992 ORTHO05D006704 1.3e-29 135.2 373 32.4
CDE03G0520 Ceratophyllum demersum HOM05D048142 ORTHO05D003476 3.0e-29 134.0 538 29.7
ECA238G3554 Erigeron canadensis HOM05D006793 ORTHO05D003476 3.1e-26 124.0 479 27.1
CSS0025253 Camellia sinensis var. sinensis HOM05D006793 ORTHO05D000001 9.0e-26 122.5 445 30.6
HPP92_027826 Vanilla planifolia HOM05D006793 ORTHO05D003476 6.5e-24 116.3 89 64.0
Ca_10462_v3 Cicer arietinum L. HOM05D001977 ORTHO05D002246 2.3e-21 107.8 490 27.8
unitig_899.g14485 Utricularia gibba HOM05D006793 ORTHO05D003476 1.6e-19 101.7 457 27.4
ATR1126G067 Amborella trichopoda HOM05D006793 ORTHO05D003476 6.3e-19 99.8 374 27.0
HanXRQChr14g0456191 Helianthus annuus HOM05D006793 ORTHO05D003476 6.3e-19 99.8 301 29.6
Zm00001eb410830 Zea mays HOM05D006793 ORTHO05D003476 2.4e-18 97.8 97 51.5
Zm00001eb137780 Zea mays HOM05D006793 ORTHO05D003476 6.9e-18 96.3 66 68.2
Os12g0528000 Oryza sativa ssp. japonica HOM05D006793 ORTHO05D003476 2.6e-17 94.4 64 65.6
HanXRQChr12g0368421 Helianthus annuus HOM05D006793 ORTHO05D003476 5.9e-17 93.2 213 35.7
CSS0050149 Camellia sinensis var. sinensis HOM05D006793 ORTHO05D003476 3.0e-13 80.9 386 26.4
SEGI_29881 Sequoiadendron giganteum HOM05D006793 ORTHO05D003476 1.5e-12 78.6 252 27.0
Dinv20860 Davidia involucrata HOM05D006793 ORTHO05D003476 6.3e-11 73.2 98 43.9
MSTRG.22259 Avicennia marina HOM05D008057 ORTHO05D003476 2.6e-09 67.8 79 38.0
Hma1.2p1_0016F.1_g010880 Hydrangea macrophylla HOM05D008057 ORTHO05D003476 1.3e-08 65.5 78 37.2
Cc00_g01550 Coffea canephora HOM05D008057 ORTHO05D003476 2.2e-08 64.7 73 42.5
MBI03_g11904_MAGBIO Magnolia biondii HOM05D008057 ORTHO05D003476 2.9e-08 64.3 124 30.6
THA.LOC104805620 Tarenaya hassleriana HOM05D012436 ORTHO05D003476 6.5e-08 63.2 189 27.5
Gohir.A03G090600 Gossypium hirsutum HOM05D008057 ORTHO05D003476 8.5e-08 62.8 75 37.3
Cpa.g.sc124.3 Carica papaya HOM05D008057 ORTHO05D003476 1.1e-07 62.4 77 36.4
Lalb_Chr14g0370111 Lupinus albus HOM05D008057 ORTHO05D003476 2.5e-07 61.2 66 42.4
Gohir.D02G118700 Gossypium hirsutum HOM05D008057 ORTHO05D003476 3.2e-07 60.8 75 36.0
Atru.chr9.28 Acer truncatum HOM05D008057 ORTHO05D003476 4.2e-07 60.5 79 36.7
Medtr6g069010 Medicago truncatula HOM05D008057 ORTHO05D003476 4.2e-07 60.5 120 30.0
Oeu046660.1 Olea europaea HOM05D006793 ORTHO05D003476 4.2e-07 60.5 280 27.1
TPR.G31356 Trifolium pratense HOM05D008057 ORTHO05D003476 4.2e-07 60.5 143 29.4
Cfa017812 Carpinus fangiana HOM05D008057 ORTHO05D003476 5.5e-07 60.1 126 28.6
Migut.N02713 Erythranthe guttata HOM05D008057 ORTHO05D003476 5.5e-07 60.1 102 32.4
Peaxi162Scf00171g00028 Petunia axillaris HOM05D008057 ORTHO05D003476 5.5e-07 60.1 73 39.7
Nitab4.5_0009307g0060 Nicotiana tabacum HOM05D008057 ORTHO05D003476 7.2e-07 59.7 61 41.0
Gorai.005G135100 Gossypium raimondii HOM05D008057 ORTHO05D003476 9.4e-07 59.3 75 34.7
Ciclev10020800m.g Citrus clementina HOM05D008057 ORTHO05D003476 1.2e-06 58.9 189 27.5
CsaV3_1G033920 Cucumis sativus L. HOM05D008057 ORTHO05D003476 1.2e-06 58.9 76 40.8
ClCG03G001720 Citrullus lanatus HOM05D008057 ORTHO05D003476 1.6e-06 58.5 137 28.5
Sp6g19870 Schrenkiella parvula HOM05D012436 ORTHO05D003476 1.6e-06 58.5 72 40.3
Rhsim10G0138900 Rhododendron simsii HOM05D008057 ORTHO05D003476 2.7e-06 57.8 67 37.3
Potri.018G151900 Populus trichocarpa HOM05D008057 ORTHO05D003476 4.7e-06 57.0 85 28.2
CDE04G2158 Ceratophyllum demersum HOM05D008057 ORTHO05D003476 6.1e-06 56.6 80 35.0
GSVIVG01024238001 Vitis vinifera HOM05D008057 ORTHO05D003476 6.1e-06 56.6 57 43.9
Duzib068G0937 Durio zibethinus HOM05D008057 ORTHO05D003476 7.9e-06 56.2 77 31.2


User provided reference genes

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