Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G1328 Fragaria x ananassa HOM05D003699 ORTHO05D004474 2.3e-122 442.2 213 100.0
FAN03G3475 Fragaria x ananassa HOM05D003699 ORTHO05D004474 7.9e-67 257.7 177 74.6
FAN06G1157 Fragaria x ananassa HOM05D003699 ORTHO05D004474 6.3e-56 221.5 110 97.3
FvH4_7g27500 Fragaria vesca HOM05D003699 ORTHO05D004474 4.7e-51 205.3 102 96.1
RcHm_v2.0_Chr1g0375981 Rosa chinensis HOM05D003699 ORTHO05D004474 2.0e-46 189.9 141 67.4
Prupe.2G285700 Prunus persica HOM05D003699 ORTHO05D004474 4.7e-43 178.7 141 63.1
TAR375G0673 Trochodendron aralioides HOM05D003699 ORTHO05D004474 3.0e-42 176.0 141 63.1
MBI04_g06627_MAGBIO Magnolia biondii HOM05D003699 ORTHO05D004474 5.7e-41 171.8 141 61.0
Aqoxy7G00521 Aquilegia oxysepala HOM05D003699 ORTHO05D004474 4.8e-40 168.7 136 61.0
Cfa008249 Carpinus fangiana HOM05D003699 ORTHO05D004474 1.4e-39 167.2 141 60.3
Cc02_g03690 Coffea canephora HOM05D003699 ORTHO05D004474 1.8e-39 166.8 146 58.2
Haze_13802 Corylus avellana HOM05D003699 ORTHO05D004474 7.0e-39 164.9 140 59.3
Dinv28516 Davidia involucrata HOM05D003699 ORTHO05D004474 1.2e-38 164.1 141 59.6
Hma1.2p1_0488F.1_g163830 Hydrangea macrophylla HOM05D003699 ORTHO05D004474 1.2e-38 164.1 140 60.0
Glyma.09G150200 Glycine max HOM05D003699 ORTHO05D004474 2.7e-38 162.9 141 58.2
Nn1g01150 Nelumbo nucifera HOM05D003699 ORTHO05D004474 2.7e-38 162.9 131 62.6
Rhsim03G0173500 Rhododendron simsii HOM05D003699 ORTHO05D004474 3.5e-38 162.5 141 57.4
Cpa.g.sc4.178 Carica papaya HOM05D003699 ORTHO05D004474 4.5e-38 162.2 141 56.7
CDE08G1313 Ceratophyllum demersum HOM05D003699 ORTHO05D004474 5.9e-38 161.8 140 55.7
Lj2g0006173 Lotus japonicus HOM05D003699 ORTHO05D004474 7.7e-38 161.4 141 58.2
CiPaw.04G064600 Carya illinoinensis HOM05D003699 ORTHO05D004474 1.7e-37 160.2 141 59.6
CANSAT21G1948 Cannabis sativa HOM05D003699 ORTHO05D004474 2.2e-37 159.8 141 57.4
Actinidia32916 Actinidia chinensis HOM05D003699 ORTHO05D004474 2.9e-37 159.5 146 54.1
QL12p039078 Quercus lobata HOM05D003699 ORTHO05D004474 3.8e-37 159.1 141 57.4
Oeu030154.1 Olea europaea HOM05D003699 ORTHO05D004474 5.0e-37 158.7 141 55.3
Lalb_Chr03g0032981 Lupinus albus HOM05D003699 ORTHO05D004474 8.5e-37 157.9 141 55.3
EL10Ac3g05759 Beta vulgaris HOM05D003699 ORTHO05D004474 1.1e-36 157.5 141 56.7
Glyma.16G201600 Glycine max HOM05D003699 ORTHO05D004474 1.5e-36 157.1 141 56.7
Hund04668 Selenicereus undatus HOM05D003699 ORTHO05D004474 1.5e-36 157.1 141 55.3
VMungo0464G0389 Vigna mungo HOM05D003699 ORTHO05D004474 5.5e-36 155.2 141 56.7
SalBow4G1619 Salvia bowleyana HOM05D003699 ORTHO05D004474 1.6e-35 153.7 141 56.0
Phvul.004G124500 Phaseolus vulgaris HOM05D003699 ORTHO05D004474 1.0e-34 151.0 135 56.3
Migut.F00407 Erythranthe guttata HOM05D003699 ORTHO05D004474 1.4e-34 150.6 141 53.2
ATR0618G031 Amborella trichopoda HOM05D003699 ORTHO05D004474 2.3e-34 149.8 141 53.9
Hund15969 Selenicereus undatus HOM05D003699 ORTHO05D004474 2.3e-34 149.8 143 50.3
AUR62016075 Chenopodium quinoa HOM05D003699 ORTHO05D004474 3.0e-34 149.4 143 53.8
Aqoxy2G00938 Aquilegia oxysepala HOM05D003699 ORTHO05D004474 1.2e-33 147.5 141 51.1
TAR633G0267 Trochodendron aralioides HOM05D003699 ORTHO05D004474 1.2e-33 147.5 143 49.7
Hma1.2p1_1409F.1_g281620 Hydrangea macrophylla HOM05D003699 ORTHO05D004474 1.5e-33 147.1 146 49.3
Ah.07g208500 Amaranthus hybridus HOM05D003699 ORTHO05D004474 2.6e-33 146.4 141 51.1
DCAR_027549 Daucus carota HOM05D003699 ORTHO05D004474 3.4e-33 146.0 141 50.4
SalBow6G1828 Salvia bowleyana HOM05D003699 ORTHO05D004474 4.4e-33 145.6 141 50.4
Cpa.g.sc19.204 Carica papaya HOM05D003699 ORTHO05D004474 7.5e-33 144.8 141 51.1
Manes.06G140300 Manihot esculenta HOM05D003699 ORTHO05D004474 7.5e-33 144.8 142 54.2
SGA_v2.0_scaffold184G39954 Striga asiatica HOM05D000015 ORTHO05D000270 9.8e-33 144.4 136 51.5
Nn6g34343 Nelumbo nucifera HOM05D003699 ORTHO05D004474 1.3e-32 144.1 143 54.5
Dinv34414 Davidia involucrata HOM05D003699 ORTHO05D004474 1.7e-32 143.7 141 49.6
Oeu017569.2 Olea europaea HOM05D003699 ORTHO05D004474 1.7e-32 143.7 144 50.0
SEGI_11650 Sequoiadendron giganteum HOM05D003699 ORTHO05D004474 1.7e-32 143.7 134 51.5
Nn2g11418 Nelumbo nucifera HOM05D003699 ORTHO05D004474 2.2e-32 143.3 141 48.9
Phvul.008G225700 Phaseolus vulgaris HOM05D003699 ORTHO05D004474 2.2e-32 143.3 141 50.4
Duzib128G1461 Durio zibethinus HOM05D003699 ORTHO05D004474 2.8e-32 142.9 140 50.0
Medtr5g082110 Medicago truncatula HOM05D003699 ORTHO05D004474 2.8e-32 142.9 142 50.7
Thecc.10G023400 Theobroma cacao HOM05D003699 ORTHO05D004474 2.8e-32 142.9 140 49.3
Cc02_g06810 Coffea canephora HOM05D003699 ORTHO05D004474 3.7e-32 142.5 141 50.4
Eucgr.G03038 Eucalyptus grandis HOM05D003699 ORTHO05D004474 3.7e-32 142.5 140 50.7
Glyma.02G255100 Glycine max HOM05D003699 ORTHO05D004474 3.7e-32 142.5 142 50.0
arahy.Tifrunner.gnm1.ann1.DW27I3 Arachis hypogaea HOM05D003699 ORTHO05D004474 4.9e-32 142.1 141 49.6
arahy.Tifrunner.gnm1.ann1.KJJE32 Arachis hypogaea HOM05D003699 ORTHO05D004474 4.9e-32 142.1 141 49.6
Lj8A71T56 Lonicera japonica HOM05D003699 ORTHO05D004474 4.9e-32 142.1 146 48.6
Ca_05944_v3 Cicer arietinum L. HOM05D003699 ORTHO05D004474 8.3e-32 141.4 142 50.0
TPR.G19864 Trifolium pratense HOM05D003699 ORTHO05D004474 8.3e-32 141.4 142 50.7
VMungo0647G0453 Vigna mungo HOM05D003699 ORTHO05D004474 8.3e-32 141.4 141 48.2
Psat2g034840 Pisum sativum HOM05D003699 ORTHO05D004474 1.1e-31 141.0 142 50.0
vmacro06753 Vaccinium macrocarpon HOM05D003699 ORTHO05D004474 1.1e-31 141.0 141 50.4
Migut.F01417 Erythranthe guttata HOM05D003699 ORTHO05D004474 1.4e-31 140.6 141 48.9
MSTRG.222 Avicennia marina HOM05D003699 ORTHO05D004474 1.8e-31 140.2 143 48.3
CANSAT56G1358 Cannabis sativa HOM05D003699 ORTHO05D004474 1.8e-31 140.2 141 47.5
AUR62022855 Chenopodium quinoa HOM05D003699 ORTHO05D004474 2.4e-31 139.8 143 49.7
Eucgr.K00135 Eucalyptus grandis HOM05D003699 ORTHO05D004474 2.4e-31 139.8 141 49.6
TWI53G0524 Tripterygium wilfordii HOM05D003699 ORTHO05D004474 2.4e-31 139.8 141 50.4
HPP92_012632 Vanilla planifolia HOM05D003699 ORTHO05D004474 2.4e-31 139.8 143 50.3
CSS0013577 Camellia sinensis var. sinensis HOM05D003699 ORTHO05D004474 3.1e-31 139.4 141 47.5
Manes.07G126700 Manihot esculenta HOM05D003699 ORTHO05D004474 3.1e-31 139.4 142 50.0
PGR142G0530 Punica granatum HOM05D003699 ORTHO05D004474 3.1e-31 139.4 141 48.2
Manes.10G016400 Manihot esculenta HOM05D003699 ORTHO05D004474 4.1e-31 139.0 142 50.0
MSTRG.8317 Avicennia marina HOM05D003699 ORTHO05D004474 5.4e-31 138.7 141 49.6
Lalb_Chr10g0105061 Lupinus albus HOM05D003699 ORTHO05D004474 5.4e-31 138.7 141 48.2
Gohir.D04G066900 Gossypium hirsutum HOM05D003699 ORTHO05D004474 7.0e-31 138.3 140 47.9
Gorai.012G075900 Gossypium raimondii HOM05D003699 ORTHO05D004474 7.0e-31 138.3 140 47.9
Lalb_Chr04g0250691 Lupinus albus HOM05D003699 ORTHO05D004474 7.0e-31 138.3 143 46.9
arahy.Tifrunner.gnm1.ann1.828BJC Arachis hypogaea HOM05D003699 ORTHO05D004474 9.2e-31 137.9 141 48.9
arahy.Tifrunner.gnm1.ann1.DF90RT Arachis hypogaea HOM05D003699 ORTHO05D004474 9.2e-31 137.9 141 48.9
AUR62012223 Chenopodium quinoa HOM05D003699 ORTHO05D004474 9.2e-31 137.9 143 47.6
Duzib114G0850 Durio zibethinus HOM05D003699 ORTHO05D004474 9.2e-31 137.9 140 48.6
Lj6g0001965 Lotus japonicus HOM05D003699 ORTHO05D004474 1.2e-30 137.5 141 49.6
Lalb_Chr17g0346661 Lupinus albus HOM05D003699 ORTHO05D004474 1.2e-30 137.5 142 49.3
EL10Ac2g04802 Beta vulgaris HOM05D003699 ORTHO05D004474 1.6e-30 137.1 140 47.1
Cfa001354 Carpinus fangiana HOM05D003699 ORTHO05D004474 1.6e-30 137.1 141 46.8
Potri.008G065800 Populus trichocarpa HOM05D003699 ORTHO05D004474 1.6e-30 137.1 141 48.9
CiPaw.01G296600 Carya illinoinensis HOM05D003699 ORTHO05D004474 2.0e-30 136.7 141 48.9
CiPaw.02G190700 Carya illinoinensis HOM05D003699 ORTHO05D004474 2.0e-30 136.7 143 47.6
Sc14g0005270 Simmondsia chinensis HOM05D003699 ORTHO05D004474 2.0e-30 136.7 143 48.3
Prupe.2G247400 Prunus persica HOM05D003699 ORTHO05D004474 2.7e-30 136.3 141 47.5
A09p48820 Brassica napus HOM05D003699 ORTHO05D004474 3.5e-30 136.0 142 47.9
BraA09t40335Z Brassica rapa HOM05D003699 ORTHO05D004474 3.5e-30 136.0 142 47.9
MBI14_g09435_MAGBIO Magnolia biondii HOM05D003699 ORTHO05D004474 3.5e-30 136.0 143 46.9
MD01G1148500 Malus domestica HOM05D003699 ORTHO05D004474 3.5e-30 136.0 140 47.1
GSVIVG01032860001 Vitis vinifera HOM05D003699 ORTHO05D004474 3.5e-30 136.0 141 46.1
DCAR_011795 Daucus carota HOM05D003699 ORTHO05D004474 4.5e-30 135.6 143 45.5
Lj1C951T5 Lonicera japonica HOM05D003699 ORTHO05D004474 4.5e-30 135.6 141 48.2
FAN01G2395 Fragaria x ananassa HOM05D003699 ORTHO05D004474 5.9e-30 135.2 142 47.9
LjContig00357g0025877 Lotus japonicus HOM05D003699 ORTHO05D004474 5.9e-30 135.2 141 48.2
Potri.010G191700 Populus trichocarpa HOM05D003699 ORTHO05D004474 5.9e-30 135.2 141 48.2
RcHm_v2.0_Chr1g0369551 Rosa chinensis HOM05D003699 ORTHO05D004474 5.9e-30 135.2 141 46.8
TWI09G1096 Tripterygium wilfordii HOM05D003699 ORTHO05D004474 5.9e-30 135.2 141 48.9
C08p31150 Brassica napus HOM05D003699 ORTHO05D004474 7.7e-30 134.8 142 47.2
FAN03G3166 Fragaria x ananassa HOM05D003699 ORTHO05D004474 7.7e-30 134.8 142 47.9
FAN10G1948 Fragaria x ananassa HOM05D003699 ORTHO05D004474 7.7e-30 134.8 141 46.8
Os06g0705000 Oryza sativa ssp. japonica HOM05D003699 ORTHO05D004474 7.7e-30 134.8 141 48.9
SMO364G0532 Selaginella moellendorffii HOM05D003699 ORTHO05D004474 7.7e-30 134.8 142 47.9
Aa31LG5G19610 Aethionema arabicum HOM05D003699 ORTHO05D004474 1.3e-29 134.0 141 47.5
ECA233G4954 Erigeron canadensis HOM05D006949 ORTHO05D008621 1.3e-29 134.0 141 49.6
unitig_62.g23932 Utricularia gibba HOM05D003699 ORTHO05D004474 1.3e-29 134.0 137 48.2
BolC8t50736H Brassica oleracea HOM05D003699 ORTHO05D004474 1.7e-29 133.7 141 47.5
BcaB01g00058 Brassica carinata HOM05D003699 ORTHO05D004474 2.9e-29 132.9 142 46.5
FvH4_7g24130 Fragaria vesca HOM05D003699 ORTHO05D004474 2.9e-29 132.9 141 46.8
FAN06G2830 Fragaria x ananassa HOM05D003699 ORTHO05D004474 2.9e-29 132.9 141 46.8
Sed0020578 Sechium edule HOM05D003699 ORTHO05D004474 2.9e-29 132.9 141 46.8
Lsat_1_v5_gn_2_121421 Lactuca sativa HOM05D003699 ORTHO05D004474 3.8e-29 132.5 141 49.6
Sp5g06650 Schrenkiella parvula HOM05D003699 ORTHO05D004474 3.8e-29 132.5 141 46.1
THA.LOC104810061 Tarenaya hassleriana HOM05D003699 ORTHO05D004474 3.8e-29 132.5 141 46.8
MD07G1215500 Malus domestica HOM05D003699 ORTHO05D004474 5.0e-29 132.1 140 45.7
ClCG07G004050 Citrullus lanatus HOM05D003699 ORTHO05D004474 8.6e-29 131.3 142 47.2
Thhalv10010522m.g Eutrema salsugineum HOM05D003699 ORTHO05D004474 8.6e-29 131.3 141 45.4
Gohir.A05G316100 Gossypium hirsutum HOM05D003699 ORTHO05D004474 8.6e-29 131.3 158 42.4
PSO210G5252 Papaver somniferum HOM05D003699 ORTHO05D004474 8.6e-29 131.3 141 47.5
THA.LOC104824308 Tarenaya hassleriana HOM05D003699 ORTHO05D004474 8.6e-29 131.3 141 45.4
arahy.Tifrunner.gnm1.ann1.68I314 Arachis hypogaea HOM05D003699 ORTHO05D004474 1.1e-28 131.0 141 49.6
arahy.Tifrunner.gnm1.ann1.8Y7MPM Arachis hypogaea HOM05D003699 ORTHO05D004474 1.9e-28 130.2 141 49.6
arahy.Tifrunner.gnm1.ann1.VSX1SJ Arachis hypogaea HOM05D003699 ORTHO05D004474 1.9e-28 130.2 141 49.6
HanXRQChr07g0202501 Helianthus annuus HOM05D003699 ORTHO05D004474 2.5e-28 129.8 141 48.2
SMO356G0263 Selaginella moellendorffii HOM05D003699 ORTHO05D004474 2.5e-28 129.8 139 46.8
CARHR165940 Cardamine hirsuta HOM05D003699 ORTHO05D004474 3.3e-28 129.4 141 45.4
AagrBONN_evm.TU.Sc2ySwM_344.2984 Anthoceros agrestis HOM05D003699 ORTHO05D004474 4.3e-28 129.0 145 44.1
AT3G55830 Arabidopsis thaliana HOM05D003699 ORTHO05D004474 5.6e-28 128.6 141 44.7
Carub.0005s2261 Capsella rubella HOM05D003699 ORTHO05D004474 5.6e-28 128.6 141 44.7
AL5G37120 Arabidopsis lyrata HOM05D003699 ORTHO05D004474 9.5e-28 127.9 141 44.7
Pp3c7_11620 Physcomitrium patens HOM05D003699 ORTHO05D004474 2.8e-27 126.3 151 44.4
Rhsim08G0206900 Rhododendron simsii HOM05D003699 ORTHO05D004474 4.7e-27 125.6 110 53.6
CsaV3_5G008970 Cucumis sativus L. HOM05D003699 ORTHO05D004474 6.1e-27 125.2 139 46.8
MELO3C034122.2 Cucumis melo HOM05D003699 ORTHO05D004474 8.0e-27 124.8 128 47.7
Haze_17194 Corylus avellana HOM05D003699 ORTHO05D004474 4.0e-26 122.5 108 51.9
Atru.chr10.101 Acer truncatum HOM05D003699 ORTHO05D004474 5.2e-26 122.1 145 43.4
Atru.chr10.119 Acer truncatum HOM05D003699 ORTHO05D004474 5.2e-26 122.1 145 43.4
Ciclev10032067m.g Citrus clementina HOM05D003699 ORTHO05D004474 5.2e-26 122.1 140 45.0
Dinv20964 Davidia involucrata HOM05D003699 ORTHO05D004474 5.2e-26 122.1 188 37.2
Dinv20979 Davidia involucrata HOM05D003699 ORTHO05D004474 5.2e-26 122.1 188 37.2
SMO197G0083 Selaginella moellendorffii HOM05D003699 ORTHO05D004474 1.5e-25 120.6 107 52.3
Mapoly0006s0046 Marchantia polymorpha HOM05D003699 ORTHO05D004474 9.8e-25 117.9 143 42.0
Sabra08G0048200 Salix brachista HOM05D003699 ORTHO05D004474 4.9e-24 115.5 181 37.6
CSS0037512 Camellia sinensis var. sinensis HOM05D003699 ORTHO05D004474 7.0e-23 111.7 104 51.9
SEGI_16324 Sequoiadendron giganteum HOM05D003699 ORTHO05D004474 2.0e-22 110.2 99 54.5
ATR0661G209 Amborella trichopoda HOM05D003699 ORTHO05D004474 5.9e-22 108.6 98 55.1
FAN06G0797 Fragaria x ananassa HOM05D003699 ORTHO05D004474 7.3e-20 101.7 49 98.0
AUR62021284 Chenopodium quinoa HOM05D003699 ORTHO05D004474 6.2e-19 98.6 98 51.0
Glyma.14G061400 Glycine max HOM05D003699 ORTHO05D004474 1.8e-18 97.1 98 49.0
COL.COLO4_25638 Corchorus olitorius HOM05D003699 ORTHO05D004474 5.2e-18 95.5 97 48.5
Thecc.03G165400 Theobroma cacao HOM05D003699 ORTHO05D004474 1.5e-17 94.0 113 44.2
SEGI_25549 Sequoiadendron giganteum HOM05D003699 ORTHO05D004474 1.7e-16 90.5 77 53.2
Sc19g0001790 Simmondsia chinensis HOM05D003699 ORTHO05D004474 4.6e-14 82.4 76 48.7
Actinidia13534 Actinidia chinensis HOM05D003699 ORTHO05D004474 1.0e-13 81.3 103 43.7
vmacro06985 Vaccinium macrocarpon HOM05D003699 ORTHO05D004474 3.0e-13 79.7 136 35.3
FAN06G2762 Fragaria x ananassa HOM05D003699 ORTHO05D004474 4.0e-10 69.3 40 82.5
Zm00001eb227330 Zea mays HOM05D003699 ORTHO05D004474 5.2e-10 68.9 76 43.4
ECA238G4741 Erigeron canadensis HOM05D003699 ORTHO05D004474 2.6e-09 66.6 62 53.2
SHI03483 Sapria himalayana HOM05D003699 ORTHO05D004474 2.6e-09 66.6 86 38.4
Atru.chr10.7 Acer truncatum HOM05D003699 ORTHO05D004474 9.8e-09 64.7 78 41.0
THA.LOC104810185 Tarenaya hassleriana HOM05D003699 ORTHO05D004474 2.4e-07 60.1 49 53.1
Actinidia29685 Actinidia chinensis HOM05D003699 ORTHO05D004474 3.2e-07 59.7 48 52.1
A04p04200 Brassica napus HOM05D003699 ORTHO05D041519 3.2e-07 59.7 51 49.0
FAN06G4720 Fragaria x ananassa HOM05D003699 ORTHO05D004474 5.4e-07 58.9 29 100.0
MD01G1191300 Malus domestica HOM05D003699 ORTHO05D004474 1.6e-06 57.4 45 60.0
Cre12.g508700 Chlamydomonas reinhardtii HOM05D003699 ORTHO05D004474 2.1e-06 57.0 128 29.7
PRCOL_00005734 Prasinoderma coloniale HOM05D003699 ORTHO05D004474 2.1e-06 57.0 100 33.0
MCO16G537 Micromonas commoda HOM05D003699 ORTHO05D004474 6.0e-06 55.5 128 29.7


User provided reference genes

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