Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G1242 Fragaria x ananassa HOM05D007869 ORTHO05D009962 1.7e-162 575.9 278 100.0
FAN10G0101 Fragaria x ananassa HOM05D007869 ORTHO05D009962 1.3e-154 549.7 325 84.9
FAN06G2096 Fragaria x ananassa HOM05D007869 ORTHO05D009962 1.8e-151 539.3 325 83.4
FAN03G1443 Fragaria x ananassa HOM05D007869 ORTHO05D009962 4.0e-151 538.1 325 83.4
FAN03G2169 Fragaria x ananassa HOM05D007869 ORTHO05D009962 4.0e-151 538.1 325 83.4
RcHm_v2.0_Chr1g0361741 Rosa chinensis HOM05D007869 ORTHO05D009962 3.0e-143 511.9 326 77.9
FAN06G3475 Fragaria x ananassa HOM05D007869 ORTHO05D009962 1.2e-142 510.0 249 98.4
FAN01G2503 Fragaria x ananassa HOM05D007869 ORTHO05D009962 1.1e-140 503.4 249 96.8
Prupe.2G203300 Prunus persica HOM05D007869 ORTHO05D009962 1.9e-113 412.9 325 64.0
FvH4_7g18090 Fragaria vesca HOM05D007869 ORTHO05D009962 5.6e-97 358.2 248 75.8
Haze_15765 Corylus avellana HOM05D007869 ORTHO05D009962 9.6e-97 357.5 249 69.1
Cfa003717 Carpinus fangiana HOM05D007869 ORTHO05D009962 1.6e-96 356.7 249 69.1
CANSAT56G0171 Cannabis sativa HOM05D007869 ORTHO05D009962 1.2e-94 350.5 248 67.3
CiPaw.02G045900 Carya illinoinensis HOM05D007869 ORTHO05D009962 1.8e-90 336.7 244 66.4
Manes.05G005500 Manihot esculenta HOM05D007869 ORTHO05D009962 2.1e-88 329.7 255 60.4
FvH4_7g18120 Fragaria vesca HOM05D007869 ORTHO05D009962 1.1e-87 327.4 167 97.0
Duzib138G0629 Durio zibethinus HOM05D007869 ORTHO05D009962 5.3e-87 325.1 254 60.6
Atru.chr5.803 Acer truncatum HOM05D007869 ORTHO05D009962 4.5e-86 322.0 250 62.4
TWI14G0946 Tripterygium wilfordii HOM05D007869 ORTHO05D009962 7.6e-86 321.2 255 61.6
Ciclev10021277m.g Citrus clementina HOM05D007869 ORTHO05D009962 2.9e-85 319.3 255 60.8
Thecc.01G330400 Theobroma cacao HOM05D007869 ORTHO05D009962 3.2e-84 315.8 254 59.8
Lalb_Chr04g0258981 Lupinus albus HOM05D007869 ORTHO05D009962 5.5e-84 315.1 252 61.1
TAR374G1227 Trochodendron aralioides HOM05D007869 ORTHO05D009962 1.0e-82 310.8 266 56.4
Glyma.09G283900 Glycine max HOM05D007869 ORTHO05D009962 1.3e-82 310.5 253 62.1
COL.COLO4_23074 Corchorus olitorius HOM05D007869 ORTHO05D009962 3.0e-82 309.3 257 59.1
Sabra02G0132700 Salix brachista HOM05D007869 ORTHO05D009962 6.7e-82 308.1 244 61.1
Glyma.20G001800 Glycine max HOM05D007869 ORTHO05D009962 8.7e-82 307.8 254 61.0
Nn3g18755 Nelumbo nucifera HOM05D007869 ORTHO05D009962 8.7e-82 307.8 244 61.1
Cpa.g.sc57.67 Carica papaya HOM05D007869 ORTHO05D009962 1.1e-81 307.4 235 63.8
Potri.014G108300 Populus trichocarpa HOM05D007869 ORTHO05D009962 1.9e-81 306.6 243 58.4
Sabra14G0079800 Salix brachista HOM05D007869 ORTHO05D009962 3.3e-81 305.8 243 58.8
VMungo0251G2255 Vigna mungo HOM05D007869 ORTHO05D009962 7.4e-81 304.7 267 56.6
Lalb_Chr17g0337801 Lupinus albus HOM05D007869 ORTHO05D009962 1.6e-80 303.5 252 58.7
TPR.G29782 Trifolium pratense HOM05D007869 ORTHO05D009962 3.7e-80 302.4 250 59.6
Lj2g0022280 Lotus japonicus HOM05D007869 ORTHO05D009962 2.0e-78 296.6 254 61.0
Phvul.003G003700 Phaseolus vulgaris HOM05D007869 ORTHO05D009962 7.6e-78 294.7 253 58.5
Medtr1g038260 Medicago truncatula HOM05D007869 ORTHO05D009962 2.9e-77 292.7 281 53.7
THA.LOC104825914 Tarenaya hassleriana HOM05D007869 ORTHO05D009962 4.9e-77 292.0 221 61.5
Psat6g099760 Pisum sativum HOM05D007869 ORTHO05D009962 8.4e-77 291.2 248 58.9
CsaV3_6G008420 Cucumis sativus L. HOM05D007869 ORTHO05D009962 1.1e-76 290.8 220 61.4
ClCG06G002380 Citrullus lanatus HOM05D007869 ORTHO05D009962 7.1e-76 288.1 219 62.6
Sc01g0002100 Simmondsia chinensis HOM05D007869 ORTHO05D009962 7.9e-75 284.6 234 56.8
Ah.05g178800 Amaranthus hybridus HOM05D007869 ORTHO05D009962 3.0e-74 282.7 235 60.4
Thhalv10009953m.g Eutrema salsugineum HOM05D007869 ORTHO05D009962 3.0e-74 282.7 224 59.8
Actinidia28076 Actinidia chinensis HOM05D007869 ORTHO05D009962 1.9e-73 280.0 215 62.8
Sp1g01350 Schrenkiella parvula HOM05D007869 ORTHO05D009962 7.4e-73 278.1 224 59.8
CSS0017560 Camellia sinensis var. sinensis HOM05D007869 ORTHO05D009962 2.2e-72 276.6 263 56.7
EL10Ac1g00161 Beta vulgaris HOM05D007869 ORTHO05D009962 2.8e-72 276.2 240 58.3
CARHR001570 Cardamine hirsuta HOM05D007869 ORTHO05D009962 1.1e-71 274.2 225 58.2
AUR62004577 Chenopodium quinoa HOM05D007869 ORTHO05D009962 1.1e-71 274.2 239 58.2
BraA10t42381Z Brassica rapa HOM05D007869 ORTHO05D009962 1.4e-71 273.9 225 57.8
BolC5t28887H Brassica oleracea HOM05D007869 ORTHO05D009962 2.4e-71 273.1 224 58.5
Sed0016589 Sechium edule HOM05D007869 ORTHO05D009962 2.4e-71 273.1 224 58.9
A10p01030 Brassica napus HOM05D007869 ORTHO05D009962 4.1e-71 272.3 225 57.3
C05p01060 Brassica napus HOM05D007869 ORTHO05D009962 4.1e-71 272.3 224 58.5
AUR62023523 Chenopodium quinoa HOM05D007869 ORTHO05D009962 1.5e-70 270.4 221 59.7
MBI04_g38990_MAGBIO Magnolia biondii HOM05D007869 ORTHO05D009962 2.0e-70 270.0 245 55.5
BcaC05g24607 Brassica carinata HOM05D007869 ORTHO05D009962 4.5e-70 268.9 215 59.5
Carub.0001s0129 Capsella rubella HOM05D007869 ORTHO05D009962 7.7e-70 268.1 229 57.2
Aa31LG1G10230 Aethionema arabicum HOM05D007869 ORTHO05D009962 1.7e-69 266.9 235 55.7
AT2G41610 Arabidopsis thaliana HOM05D007869 ORTHO05D009962 4.2e-68 262.3 222 58.6
MELO3C022297.2 Cucumis melo HOM05D007869 ORTHO05D009962 2.1e-67 260.0 195 62.6
AL4G39680 Arabidopsis lyrata HOM05D007869 ORTHO05D009962 1.0e-66 257.7 225 57.3
ATR0579G134 Amborella trichopoda HOM05D007869 ORTHO05D009962 1.8e-66 256.9 244 52.0
arahy.Tifrunner.gnm1.ann1.WBP5Q2 Arachis hypogaea HOM05D007869 ORTHO05D009962 5.7e-65 251.9 241 52.7
arahy.Tifrunner.gnm1.ann1.2P25JP Arachis hypogaea HOM05D007869 ORTHO05D009962 2.8e-64 249.6 242 52.5
Gorai.004G148700 Gossypium raimondii HOM05D007869 ORTHO05D009962 1.1e-63 247.7 183 65.0
Gohir.A08G122700 Gossypium hirsutum HOM05D007869 ORTHO05D009962 1.8e-63 246.9 183 65.0
Gohir.D08G144000 Gossypium hirsutum HOM05D007869 ORTHO05D009962 1.8e-63 246.9 183 65.0
HPP92_007374 Vanilla planifolia HOM05D007869 ORTHO05D009962 2.6e-62 243.0 234 50.4
PSO384G3553 Papaver somniferum HOM05D007869 ORTHO05D009962 3.8e-61 239.2 258 49.6
Zm00001eb398460 Zea mays HOM05D007869 ORTHO05D009962 3.8e-61 239.2 240 50.0
Zm00001eb010960 Zea mays HOM05D007869 ORTHO05D009962 5.0e-61 238.8 238 49.2
Os03g0253600 Oryza sativa ssp. japonica HOM05D007869 ORTHO05D009962 5.5e-60 235.3 219 52.5
Os10g0200700 Oryza sativa ssp. japonica HOM05D007869 ORTHO05D009962 7.2e-60 235.0 224 51.3
PSO135G1025 Papaver somniferum HOM05D007869 ORTHO05D009962 7.9e-59 231.5 259 47.9
Lju170C22T1 Lonicera japonica HOM05D007869 ORTHO05D009962 7.4e-57 224.9 219 53.0
Rhsim01G0181500 Rhododendron simsii HOM05D007869 ORTHO05D009962 7.0e-55 218.4 191 57.1
Medtr1g038290 Medicago truncatula HOM05D007869 ORTHO05D009962 9.1e-55 218.0 273 44.0
MBI04_g27772_MAGBIO Magnolia biondii HOM05D007869 ORTHO05D009962 1.7e-53 213.8 182 59.3
Dinv32655 Davidia involucrata HOM05D007869 ORTHO05D009962 1.7e-40 170.6 143 55.9
Duzib133G0538 Durio zibethinus HOM05D007869 ORTHO05D009962 1.8e-23 114.0 193 33.7
SEGI_25376 Sequoiadendron giganteum HOM05D007869 ORTHO05D009962 3.6e-11 73.2 84 47.6


User provided reference genes

Program Settings