Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G1237 Fragaria x ananassa HOM05D006379 ORTHO05D007830 1.2e-71 273.1 135 100.0
FvH4_5g21760 Fragaria vesca HOM05D006379 ORTHO05D007830 7.3e-58 227.3 124 90.3
FAN18G2446 Fragaria x ananassa HOM05D006379 ORTHO05D007830 2.1e-57 225.7 124 89.5
FAN13G0612 Fragaria x ananassa HOM05D006379 ORTHO05D007830 4.4e-55 218.0 125 87.2
RcHm_v2.0_Chr7g0209251 Rosa chinensis HOM05D006379 ORTHO05D007830 7.3e-50 200.7 125 81.6
Prupe.5G039500 Prunus persica HOM05D006379 ORTHO05D007830 2.8e-41 172.2 124 71.0
MD16G1276600 Malus domestica HOM05D006379 ORTHO05D007830 4.7e-41 171.4 122 69.7
MD06G1032600 Malus domestica HOM05D006379 ORTHO05D007830 6.2e-41 171.0 124 69.4
Dinv25202 Davidia involucrata HOM05D006379 ORTHO05D007830 1.1e-40 170.2 124 70.2
Potri.003G090400 Populus trichocarpa HOM05D006379 ORTHO05D007830 3.4e-39 165.2 124 68.5
GSVIVG01013191001 Vitis vinifera HOM05D006379 ORTHO05D007830 5.8e-39 164.5 124 67.7
Sabra03G0060200 Salix brachista HOM05D006379 ORTHO05D007830 6.4e-38 161.0 125 65.6
CSS0039884 Camellia sinensis var. sinensis HOM05D006379 ORTHO05D007830 2.4e-37 159.1 125 65.6
Actinidia09219 Actinidia chinensis HOM05D006379 ORTHO05D007830 3.2e-37 158.7 124 63.7
Dinv28941 Davidia involucrata HOM05D006379 ORTHO05D007830 3.2e-37 158.7 123 66.7
Atru.chr6.1742 Acer truncatum HOM05D006379 ORTHO05D007830 4.1e-37 158.3 124 65.3
Thecc.03G229900 Theobroma cacao HOM05D006379 ORTHO05D007830 4.1e-37 158.3 124 63.7
FAN20G0396 Fragaria x ananassa HOM05D006379 ORTHO05D007830 5.4e-37 157.9 95 85.3
AUR62018730 Chenopodium quinoa HOM05D006379 ORTHO05D007830 9.2e-37 157.1 120 67.5
TAR362G0922 Trochodendron aralioides HOM05D006379 ORTHO05D007830 9.2e-37 157.1 122 63.9
Manes.15G169000 Manihot esculenta HOM05D006379 ORTHO05D007830 1.2e-36 156.8 118 65.3
Cfa012418 Carpinus fangiana HOM05D006379 ORTHO05D007830 2.1e-36 156.0 126 63.5
MSTRG.12139 Avicennia marina HOM05D006379 ORTHO05D007830 2.7e-36 155.6 103 76.7
Aa31LG2G13410 Aethionema arabicum HOM05D006379 ORTHO05D007830 6.0e-36 154.5 97 77.3
CiPaw.12G062300 Carya illinoinensis HOM05D006379 ORTHO05D007830 6.0e-36 154.5 105 73.3
QL12p006043 Quercus lobata HOM05D006379 ORTHO05D007830 6.0e-36 154.5 125 62.4
CSS0003148 Camellia sinensis var. sinensis HOM05D006379 ORTHO05D007830 1.0e-35 153.7 103 72.8
Haze_08258 Corylus avellana HOM05D006379 ORTHO05D007830 1.0e-35 153.7 124 63.7
AUR62007269 Chenopodium quinoa HOM05D006379 ORTHO05D007830 1.3e-35 153.3 104 75.0
SalBow6G2021 Salvia bowleyana HOM05D006379 ORTHO05D007830 1.7e-35 152.9 103 73.8
Gohir.D12G211700 Gossypium hirsutum HOM05D006379 ORTHO05D007830 3.0e-35 152.1 126 64.3
CsaV3_3G049310 Cucumis sativus L. HOM05D006379 ORTHO05D007830 3.9e-35 151.8 117 68.4
ClCG09G012080 Citrullus lanatus HOM05D006379 ORTHO05D007830 5.1e-35 151.4 100 74.0
Sed0015821 Sechium edule HOM05D006379 ORTHO05D007830 6.6e-35 151.0 105 72.4
BolC8t47934H Brassica oleracea HOM05D006379 ORTHO05D007830 8.6e-35 150.6 103 70.9
BraA08t32902Z Brassica rapa HOM05D006379 ORTHO05D007830 8.6e-35 150.6 103 70.9
BcaB07g32954 Brassica carinata HOM05D006379 ORTHO05D007830 1.1e-34 150.2 119 65.5
Cc08_g02510 Coffea canephora HOM05D006379 ORTHO05D007830 1.1e-34 150.2 128 64.8
BcaC07g37588 Brassica carinata HOM05D006379 ORTHO05D007830 1.9e-34 149.4 100 73.0
Gohir.A12G209000 Gossypium hirsutum HOM05D006379 ORTHO05D007830 1.9e-34 149.4 126 62.7
A08p09010 Brassica napus HOM05D006379 ORTHO05D007830 3.3e-34 148.7 100 72.0
Hma1.2p1_0991F.1_g245020 Hydrangea macrophylla HOM05D006379 ORTHO05D007830 3.3e-34 148.7 127 64.6
Sopen08g025630 Solanum pennellii HOM05D006379 ORTHO05D007830 3.3e-34 148.7 127 65.4
THA.LOC104814439 Tarenaya hassleriana HOM05D006379 ORTHO05D007830 3.3e-34 148.7 109 68.8
Thhalv10008887m.g Eutrema salsugineum HOM05D006379 ORTHO05D007830 4.3e-34 148.3 100 72.0
Eucgr.E00291 Eucalyptus grandis HOM05D006379 ORTHO05D007830 5.6e-34 147.9 105 72.4
Sp1g28350 Schrenkiella parvula HOM05D006379 ORTHO05D007830 5.6e-34 147.9 103 69.9
A09p33660 Brassica napus HOM05D006379 ORTHO05D007830 7.3e-34 147.5 119 63.9
BraA09t38912Z Brassica rapa HOM05D006379 ORTHO05D007830 7.3e-34 147.5 119 63.9
Nitab4.5_0001276g0050 Nicotiana tabacum HOM05D006379 ORTHO05D007830 7.3e-34 147.5 124 66.1
Hund14407 Selenicereus undatus HOM05D006379 ORTHO05D007830 7.3e-34 147.5 125 64.0
PGSC0003DMG400017532 Solanum tuberosum HOM05D006379 ORTHO05D007830 7.3e-34 147.5 127 64.6
AL1G46800 Arabidopsis lyrata HOM05D006379 ORTHO05D007830 9.6e-34 147.1 100 73.0
CANSAT21G0322 Cannabis sativa HOM05D006379 ORTHO05D007830 9.6e-34 147.1 116 65.5
COL.COLO4_17063 Corchorus olitorius HOM05D006379 ORTHO05D007830 9.6e-34 147.1 120 62.5
Carub.0001s3096 Capsella rubella HOM05D006379 ORTHO05D007830 1.2e-33 146.7 100 73.0
Duzib084G0654 Durio zibethinus HOM05D006379 ORTHO05D007830 1.2e-33 146.7 125 63.2
Nitab4.5_0002373g0030 Nicotiana tabacum HOM05D006379 ORTHO05D007830 1.2e-33 146.7 124 66.1
CARHR032000 Cardamine hirsuta HOM05D006379 ORTHO05D007830 1.6e-33 146.4 103 69.9
Ah.12g054900 Amaranthus hybridus HOM05D006379 ORTHO05D007830 2.1e-33 146.0 103 70.9
Aqoxy5G02873 Aquilegia oxysepala HOM05D006379 ORTHO05D007830 2.1e-33 146.0 113 63.7
AT1G32550 Arabidopsis thaliana HOM05D006379 ORTHO05D007830 2.1e-33 146.0 99 72.7
Solyc08g077050.3 Solanum lycopersicum HOM05D006379 ORTHO05D007830 2.1e-33 146.0 127 64.6
AL1G48020 Arabidopsis lyrata HOM05D006379 ORTHO05D007830 2.8e-33 145.6 103 70.9
Gorai.008G227300 Gossypium raimondii HOM05D006379 ORTHO05D007830 2.8e-33 145.6 132 61.4
HanXRQChr02g0043511 Helianthus annuus HOM05D006379 ORTHO05D007830 4.7e-33 144.8 108 69.4
CAN.G1659.5 Capsicum annuum HOM05D006379 ORTHO05D007830 6.2e-33 144.4 127 63.8
Lsat_1_v5_gn_6_78541 Lactuca sativa HOM05D006379 ORTHO05D007830 6.2e-33 144.4 124 62.9
Nn4g25240 Nelumbo nucifera HOM05D006379 ORTHO05D007830 6.2e-33 144.4 105 68.6
Ciclev10032819m.g Citrus clementina HOM05D006379 ORTHO05D007830 8.1e-33 144.1 128 60.9
ECA240G2404 Erigeron canadensis HOM05D006379 ORTHO05D007830 8.1e-33 144.1 124 64.5
TPR.G29030 Trifolium pratense HOM05D006379 ORTHO05D007830 8.1e-33 144.1 112 63.4
CSS0002978 Camellia sinensis var. sinensis HOM05D006379 ORTHO05D007830 1.8e-32 142.9 118 61.9
Medtr4g098490 Medicago truncatula HOM05D006379 ORTHO05D007830 1.8e-32 142.9 121 63.6
Sed0017672 Sechium edule HOM05D006379 ORTHO05D007830 1.8e-32 142.9 103 68.0
TWI81G0344 Tripterygium wilfordii HOM05D006379 ORTHO05D007830 2.4e-32 142.5 134 60.4
Migut.A01031 Erythranthe guttata HOM05D006379 ORTHO05D007830 5.2e-32 141.4 103 71.8
Os03g0685000 Oryza sativa ssp. japonica HOM05D006379 ORTHO05D007830 6.9e-32 141.0 95 70.5
Duzib205G0717 Durio zibethinus HOM05D006379 ORTHO05D007830 1.5e-31 139.8 119 64.7
Lalb_Chr05g0220541 Lupinus albus HOM05D006379 ORTHO05D007830 2.0e-31 139.4 110 65.5
Zm00001eb217230 Zea mays HOM05D006379 ORTHO05D007830 2.6e-31 139.0 107 65.4
MELO3C003395.2 Cucumis melo HOM05D006379 ORTHO05D007830 4.4e-31 138.3 125 60.8
FAN04G0985 Fragaria x ananassa HOM05D006379 ORTHO05D007830 5.8e-31 137.9 71 94.4
FAN10G3344 Fragaria x ananassa HOM05D000053 ORTHO05D000035 9.9e-31 137.1 78 87.2
Glyma.05G112100 Glycine max HOM05D006379 ORTHO05D007830 9.9e-31 137.1 127 56.7
PGR004G2142 Punica granatum HOM05D006379 ORTHO05D007830 9.9e-31 137.1 118 63.6
Peaxi162Scf00006g00426 Petunia axillaris HOM05D006379 ORTHO05D007830 1.3e-30 136.7 109 65.1
Glyma.17G154900 Glycine max HOM05D006379 ORTHO05D007830 1.7e-30 136.3 122 56.6
PSO357G0477 Papaver somniferum HOM05D006379 ORTHO05D007830 1.7e-30 136.3 123 57.7
Psat4g078880 Pisum sativum HOM05D006379 ORTHO05D007830 1.7e-30 136.3 120 61.7
Lj4g0008037 Lotus japonicus HOM05D006379 ORTHO05D007830 2.9e-30 135.6 100 66.0
PSO170G4107 Papaver somniferum HOM05D006379 ORTHO05D007830 3.8e-30 135.2 124 58.9
Phvul.003G230200 Phaseolus vulgaris HOM05D006379 ORTHO05D007830 3.8e-30 135.2 122 58.2
Sc07g0008750 Simmondsia chinensis HOM05D006379 ORTHO05D007830 3.8e-30 135.2 114 63.2
ATR0796G077 Amborella trichopoda HOM05D006379 ORTHO05D007830 4.9e-30 134.8 85 74.1
vmacro14164 Vaccinium macrocarpon HOM05D006379 ORTHO05D007830 6.4e-30 134.4 107 60.7
DCAR_024971 Daucus carota HOM05D006379 ORTHO05D007830 1.1e-29 133.7 118 60.2
arahy.Tifrunner.gnm1.ann1.AEP3KG Arachis hypogaea HOM05D006379 ORTHO05D007830 1.9e-29 132.9 118 61.9
arahy.Tifrunner.gnm1.ann1.YTUI1C Arachis hypogaea HOM05D006379 ORTHO05D007830 1.9e-29 132.9 118 61.9
VMungo0251G0261 Vigna mungo HOM05D000740 ORTHO05D005071 2.4e-29 132.5 122 56.6
HPP92_013491 Vanilla planifolia HOM05D006379 ORTHO05D007830 1.6e-28 129.8 82 72.0
HPP92_026045 Vanilla planifolia HOM05D006379 ORTHO05D007830 1.6e-28 129.8 82 72.0
Lj2A242T73 Lonicera japonica HOM05D006379 ORTHO05D007830 4.6e-28 128.3 153 48.4
SGA_v2.0_scaffold104G30206 Striga asiatica HOM05D006379 ORTHO05D007830 1.0e-27 127.1 154 50.0
FAN08G2939 Fragaria x ananassa HOM05D006379 ORTHO05D007830 1.3e-27 126.7 75 84.0
SMO134G0248 Selaginella moellendorffii HOM05D006379 ORTHO05D007830 3.9e-27 125.2 79 72.2
FAN10G0731 Fragaria x ananassa HOM05D000053 ORTHO05D000035 6.6e-27 124.4 68 89.7
MBI18_g03873_MAGBIO Magnolia biondii HOM05D006379 ORTHO05D007830 2.8e-25 119.0 106 58.5
Mapoly0177s0016 Marchantia polymorpha HOM05D006379 ORTHO05D007830 6.2e-25 117.9 76 75.0
AagrBONN_evm.TU.Sc2ySwM_228.4201 Anthoceros agrestis HOM05D006379 ORTHO05D007830 8.1e-25 117.5 79 70.9
Pp3c17_15760 Physcomitrium patens HOM05D006379 ORTHO05D007830 1.1e-24 117.1 79 68.4
SEGI_19144 Sequoiadendron giganteum HOM05D006379 ORTHO05D007830 1.4e-24 116.7 110 57.3
Ca_22070_v3 Cicer arietinum L. HOM05D006379 ORTHO05D007830 2.6e-23 112.5 125 51.2
EL10Ac5g12142 Beta vulgaris HOM05D006379 ORTHO05D007830 9.9e-23 110.5 111 55.9
Nitab4.5_0000089g0020 Nicotiana tabacum HOM05D006379 ORTHO05D007830 1.3e-22 110.2 104 61.5
CBR_g24310 Chara braunii HOM05D006379 ORTHO05D007830 1.4e-21 106.7 79 68.4
BcaB04g17950 Brassica carinata HOM05D006379 ORTHO05D007830 7.1e-21 104.4 80 62.5
arahy.Tifrunner.gnm1.ann1.QRW6GR Arachis hypogaea HOM05D006379 ORTHO05D007830 1.2e-20 103.6 95 62.1
C05p32020 Brassica napus HOM05D006379 ORTHO05D007830 2.3e-19 99.4 57 80.7
BolC5t31928H Brassica oleracea HOM05D006379 ORTHO05D007830 8.7e-19 97.4 52 84.6
Potri.003G176400 Populus trichocarpa HOM05D006379 ORTHO05D007830 9.6e-18 94.0 153 44.4
Cre03.g183850 Chlamydomonas reinhardtii HOM05D001025 ORTHO05D007830 4.5e-15 85.1 82 47.6
PRCOL_00004887 Prasinoderma coloniale HOM05D006379 ORTHO05D007830 1.6e-12 76.6 81 44.4
MCO07G595 Micromonas commoda HOM05D006379 ORTHO05D007830 2.7e-12 75.9 84 46.4
unitig_744.g24478 Utricularia gibba HOM05D006379 ORTHO05D007830 4.6e-12 75.1 94 50.0
MBI08_g15145_MAGBIO Magnolia biondii HOM05D002807 ORTHO05D004199 4.5e-07 58.5 37 73.0
MBI18_g17201_MAGBIO Magnolia biondii HOM05D002807 ORTHO05D005987 5.8e-07 58.2 35 77.1
Gohir.D13G227400 Gossypium hirsutum HOM05D001025 ORTHO05D000837 1.0e-06 57.4 52 46.2
Gorai.013G194800 Gossypium raimondii HOM05D001025 ORTHO05D000837 1.0e-06 57.4 52 46.2
Gorai.013G257900 Gossypium raimondii HOM05D001025 ORTHO05D000837 1.0e-06 57.4 52 46.2
Os05g0443500 Oryza sativa ssp. japonica HOM05D001025 ORTHO05D000837 2.9e-06 55.8 65 40.0
Gohir.A13G222600 Gossypium hirsutum HOM05D001025 ORTHO05D000837 3.8e-06 55.5 53 43.4
Lalb_Chr13g0295671 Lupinus albus HOM05D001025 ORTHO05D000837 6.5e-06 54.7 73 43.8
Sabra04G0136900 Salix brachista HOM05D001025 ORTHO05D000837 6.5e-06 54.7 63 46.0


User provided reference genes

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