Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G1187 Fragaria x ananassa HOM05D007705 ORTHO05D009720 2.0e-33 145.2 73 100.0
FvH4_7g14160 Fragaria vesca HOM05D007705 ORTHO05D009720 1.7e-24 115.5 79 79.7
FAN03G0317 Fragaria x ananassa HOM05D007705 ORTHO05D009720 1.7e-24 115.5 79 79.7
FAN06G1915 Fragaria x ananassa HOM05D007705 ORTHO05D009720 1.7e-24 115.5 79 79.7
FAN10G2029 Fragaria x ananassa HOM05D007705 ORTHO05D009720 1.7e-24 115.5 79 79.7
FAN10G0144 Fragaria x ananassa HOM05D003942 ORTHO05D004527 4.9e-24 114.0 78 78.2
RcHm_v2.0_Chr1g0354811 Rosa chinensis HOM05D007705 ORTHO05D009720 2.3e-21 105.1 79 72.2
RcHm_v2.0_Chr1g0355061 Rosa chinensis HOM05D007705 ORTHO05D009720 3.8e-21 104.4 79 70.9
FAN06G1047 Fragaria x ananassa HOM05D007705 ORTHO05D009720 1.6e-19 99.0 108 57.4
FAN01G1472 Fragaria x ananassa HOM05D007705 ORTHO05D009720 4.7e-19 97.4 115 54.8
Prupe.2G168000 Prunus persica HOM05D007705 ORTHO05D009720 1.3e-16 89.4 79 62.0
RcHm_v2.0_Chr4g0404631 Rosa chinensis HOM05D007705 ORTHO05D009720 1.4e-15 85.9 77 63.6
Ciclev10023145m.g Citrus clementina HOM05D007705 ORTHO05D009720 5.4e-15 84.0 80 58.8
Atru.chr5.465 Acer truncatum HOM05D007705 ORTHO05D009720 1.2e-14 82.8 79 57.0
TWI14G1368 Tripterygium wilfordii HOM05D007705 ORTHO05D009720 1.2e-14 82.8 77 58.4
MD07G1139100 Malus domestica HOM05D007705 ORTHO05D009720 7.8e-14 80.1 57 68.4
Sed0019596 Sechium edule HOM05D007705 ORTHO05D009720 3.9e-13 77.8 79 51.9
CANSAT56G1956 Cannabis sativa HOM05D007705 ORTHO05D009720 1.9e-12 75.5 80 52.5
Cc02_g37860 Coffea canephora HOM05D007705 ORTHO05D009720 1.9e-12 75.5 79 53.2
Nn1g01504 Nelumbo nucifera HOM05D007705 ORTHO05D009720 2.5e-12 75.1 79 54.4
Thecc.01G360600 Theobroma cacao HOM05D007705 ORTHO05D009720 7.3e-12 73.6 79 54.4
MSTRG.28220 Avicennia marina HOM05D007705 ORTHO05D009720 1.6e-11 72.4 79 48.1
Rhsim07G0016500 Rhododendron simsii HOM05D007705 ORTHO05D009720 1.6e-11 72.4 82 54.9
ClCG05G001590 Citrullus lanatus HOM05D007705 ORTHO05D009720 2.1e-11 72.0 57 63.2
Duzib133G1093 Durio zibethinus HOM05D007705 ORTHO05D009720 2.1e-11 72.0 79 53.2
Cpa.g.sc18.244 Carica papaya HOM05D007705 ORTHO05D009720 6.1e-11 70.5 75 54.7
Lj3g0020568 Lotus japonicus HOM05D007705 ORTHO05D009720 8.0e-11 70.1 79 48.1
CiPaw.01G059800 Carya illinoinensis HOM05D007705 ORTHO05D009720 1.0e-10 69.7 57 59.6
Sed0007089 Sechium edule HOM05D007705 ORTHO05D009720 1.0e-10 69.7 79 46.8
Aqoxy2G01039 Aquilegia oxysepala HOM05D007705 ORTHO05D009720 2.3e-10 68.6 79 50.6
TPR.G15966 Trifolium pratense HOM05D007705 ORTHO05D009720 2.3e-10 68.6 57 57.9
Gohir.D08G152400 Gossypium hirsutum HOM05D007705 ORTHO05D009720 3.1e-10 68.2 79 50.6
Lalb_Chr17g0339761 Lupinus albus HOM05D007705 ORTHO05D009720 3.1e-10 68.2 57 61.4
CsaV3_3G008980 Cucumis sativus L. HOM05D007705 ORTHO05D009720 8.9e-10 66.6 55 56.4
Glyma.18G231800 Glycine max HOM05D007705 ORTHO05D009720 8.9e-10 66.6 79 51.9
Hund16929 Selenicereus undatus HOM05D007705 ORTHO05D009720 8.9e-10 66.6 79 48.1
MELO3C006116.2 Cucumis melo HOM05D007705 ORTHO05D009720 1.2e-09 66.2 55 56.4
Peaxi162Scf00008g02124 Petunia axillaris HOM05D007705 ORTHO05D009720 1.2e-09 66.2 77 48.1
Eucgr.D02283 Eucalyptus grandis HOM05D007705 ORTHO05D009720 2.6e-09 65.1 65 55.4
Gohir.A08G130900 Gossypium hirsutum HOM05D007705 ORTHO05D009720 2.6e-09 65.1 79 46.8
Lsat_1_v5_gn_4_36241 Lactuca sativa HOM05D007705 ORTHO05D009720 2.6e-09 65.1 74 52.7
PGR031G2440 Punica granatum HOM05D007705 ORTHO05D009720 2.6e-09 65.1 79 48.1
SalBow5G0166 Salvia bowleyana HOM05D007705 ORTHO05D009720 2.6e-09 65.1 77 40.3
HanXRQChr16g0522821 Helianthus annuus HOM05D007705 ORTHO05D009720 3.4e-09 64.7 79 50.6
Sc23g0003000 Simmondsia chinensis HOM05D007705 ORTHO05D009720 4.4e-09 64.3 63 54.0
Manes.01G258400 Manihot esculenta HOM05D007705 ORTHO05D009720 5.8e-09 63.9 58 58.6
EL10Ac1g00428 Beta vulgaris HOM05D003942 ORTHO05D004527 7.5e-09 63.5 75 46.7
CSS0048404 Camellia sinensis var. sinensis HOM05D007705 ORTHO05D009720 7.5e-09 63.5 56 58.9
arahy.Tifrunner.gnm1.ann1.SPA1YZ Arachis hypogaea HOM05D007705 ORTHO05D009720 9.8e-09 63.2 57 54.4
Migut.N01439 Erythranthe guttata HOM05D007705 ORTHO05D009720 9.8e-09 63.2 85 45.9
Phvul.010G097400 Phaseolus vulgaris HOM05D007705 ORTHO05D009720 9.8e-09 63.2 80 46.2
GSVIVG01026894001 Vitis vinifera HOM05D007705 ORTHO05D009720 9.8e-09 63.2 62 53.2
Aa31LG1G11090 Aethionema arabicum HOM05D007705 ORTHO05D009720 1.3e-08 62.8 64 50.0
arahy.Tifrunner.gnm1.ann1.P4N769 Arachis hypogaea HOM05D007705 ORTHO05D009720 1.3e-08 62.8 57 54.4
AUR62004343 Chenopodium quinoa HOM05D007705 ORTHO05D009720 1.3e-08 62.8 75 45.3
Medtr8g031010 Medicago truncatula HOM05D007705 ORTHO05D009720 1.3e-08 62.8 79 46.8
CAN.G116.6 Capsicum annuum HOM05D007705 ORTHO05D009720 1.7e-08 62.4 77 44.2
Gorai.004G158300 Gossypium raimondii HOM05D007705 ORTHO05D009720 1.7e-08 62.4 79 49.4
Glyma.03G010900 Glycine max HOM05D007705 ORTHO05D009720 3.7e-08 61.2 57 56.1
arahy.Tifrunner.gnm1.ann1.ELVS11 Arachis hypogaea HOM05D007705 ORTHO05D009720 4.9e-08 60.8 80 45.0
arahy.Tifrunner.gnm1.ann1.5FJ7GX Arachis hypogaea HOM05D007705 ORTHO05D009720 6.4e-08 60.5 80 46.2
Carub.0006s3673 Capsella rubella HOM05D007705 ORTHO05D009720 6.4e-08 60.5 65 49.2
Ah.05g180700 Amaranthus hybridus HOM05D007705 ORTHO05D009720 8.3e-08 60.1 76 47.4
PGSC0003DMG400010270 Solanum tuberosum HOM05D007705 ORTHO05D009720 8.3e-08 60.1 77 44.2
AT4G00530 Arabidopsis thaliana HOM05D007705 ORTHO05D009720 1.9e-07 58.9 65 47.7
AL6G52940 Arabidopsis lyrata HOM05D007705 ORTHO05D009720 2.4e-07 58.5 65 49.2
Potri.014G082800 Populus trichocarpa HOM05D007705 ORTHO05D009720 3.2e-07 58.2 57 50.9
MBI18_g25521_MAGBIO Magnolia biondii HOM05D007705 ORTHO05D009720 4.1e-07 57.8 54 55.6
PSO478G4887 Papaver somniferum HOM05D007705 ORTHO05D009720 4.1e-07 57.8 66 45.5
THA.LOC104801441 Tarenaya hassleriana HOM05D007705 ORTHO05D009720 5.4e-07 57.4 73 43.8
CDE02G0341 Ceratophyllum demersum HOM05D007705 ORTHO05D009720 7.0e-07 57.0 65 46.2
ECA234G1137 Erigeron canadensis HOM05D003942 ORTHO05D004527 1.2e-06 56.2 38 71.1
Thhalv10009285m.g Eutrema salsugineum HOM05D007705 ORTHO05D009720 1.6e-06 55.8 60 48.3
CARHR000600 Cardamine hirsuta HOM05D007705 ORTHO05D009720 2.0e-06 55.5 58 50.0
CARHR248690 Cardamine hirsuta HOM05D007705 ORTHO05D009720 2.0e-06 55.5 61 47.5
AT1G01725 Arabidopsis thaliana HOM05D007705 ORTHO05D009720 2.7e-06 55.1 58 48.3
BcaB03g13609 Brassica carinata HOM05D007705 ORTHO05D009720 6.0e-06 53.9 60 48.3
Sp1g00580 Schrenkiella parvula HOM05D007705 ORTHO05D009720 7.8e-06 53.5 60 48.3


User provided reference genes

Program Settings