Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G1073 Fragaria x ananassa HOM05D005062 ORTHO05D006410 6.5e-219 763.8 408 100.0
FvH4_7g05590 Fragaria vesca HOM05D005062 ORTHO05D006410 4.2e-218 761.1 408 99.8
FAN01G3081 Fragaria x ananassa HOM05D005062 ORTHO05D006410 4.2e-218 761.1 408 99.8
FAN06G1220 Fragaria x ananassa HOM05D005062 ORTHO05D006410 2.9e-203 711.8 382 99.7
FAN03G1004 Fragaria x ananassa HOM05D005062 ORTHO05D006410 2.6e-191 672.2 454 83.3
FAN23G1954 Fragaria x ananassa HOM05D005062 ORTHO05D006410 2.3e-187 659.1 400 91.0
RcHm_v2.0_Chr1g0332571 Rosa chinensis HOM05D005062 ORTHO05D006410 5.6e-186 654.4 420 86.7
FAN23G2695 Fragaria x ananassa HOM05D005062 ORTHO05D006410 1.4e-184 649.8 456 82.2
FAN23G1474 Fragaria x ananassa HOM05D005062 ORTHO05D006410 5.8e-175 617.8 347 97.1
MD02G1255900 Malus domestica HOM05D005062 ORTHO05D006410 2.5e-170 602.4 420 80.0
Cfa010314 Carpinus fangiana HOM05D005062 ORTHO05D006410 3.3e-154 548.9 412 72.6
CiPaw.13G040200 Carya illinoinensis HOM05D005062 ORTHO05D006410 6.2e-153 544.7 423 72.1
QL04p046667 Quercus lobata HOM05D005062 ORTHO05D006410 6.0e-148 528.1 448 67.2
Atru.chr12.1008 Acer truncatum HOM05D005062 ORTHO05D006410 1.6e-145 520.0 413 71.4
Duzib106G1045 Durio zibethinus HOM05D005062 ORTHO05D006410 3.1e-144 515.8 419 70.9
PGR044G2170 Punica granatum HOM05D005062 ORTHO05D006410 1.2e-143 513.8 377 74.5
Manes.10G058650 Manihot esculenta HOM05D005062 ORTHO05D006410 6.4e-142 508.1 429 67.8
Gorai.008G099000 Gossypium raimondii HOM05D005062 ORTHO05D006410 1.2e-140 503.8 418 69.1
TAR623G1543 Trochodendron aralioides HOM05D005062 ORTHO05D006410 7.9e-140 501.1 383 72.8
Dinv11848 Davidia involucrata HOM05D005062 ORTHO05D006410 1.0e-139 500.7 345 77.7
Eucgr.J00992 Eucalyptus grandis HOM05D005062 ORTHO05D006410 1.8e-139 500.0 399 70.7
Gohir.A12G092722 Gossypium hirsutum HOM05D005062 ORTHO05D006410 6.7e-139 498.0 415 68.7
GSVIVG01011284001 Vitis vinifera HOM05D005062 ORTHO05D006410 1.1e-138 497.3 447 65.3
Cpa.g.sc183.10 Carica papaya HOM05D005062 ORTHO05D006410 1.9e-138 496.5 393 70.5
Oeu026579.1 Olea europaea HOM05D005062 ORTHO05D006410 4.0e-136 488.8 345 75.7
Potri.008G021600 Populus trichocarpa HOM05D005062 ORTHO05D006410 4.0e-136 488.8 419 66.3
CsaV3_2G034960 Cucumis sativus L. HOM05D005062 ORTHO05D006410 4.5e-135 485.3 374 71.4
DCAR_006341 Daucus carota HOM05D005062 ORTHO05D006410 1.0e-134 484.2 378 70.1
Nn2g14130 Nelumbo nucifera HOM05D005062 ORTHO05D006410 1.3e-134 483.8 368 70.7
Solyc07g014740.3 Solanum lycopersicum HOM05D005062 ORTHO05D006410 2.5e-133 479.6 420 65.7
CAN.G54.5 Capsicum annuum HOM05D005062 ORTHO05D006410 3.2e-133 479.2 408 66.2
Sabra08G0014600 Salix brachista HOM05D005062 ORTHO05D006410 4.2e-133 478.8 418 65.3
Ca_12731_v3 Cicer arietinum L. HOM05D005062 ORTHO05D006410 9.3e-133 477.6 405 64.4
Aqoxy2G01214 Aquilegia oxysepala HOM05D005062 ORTHO05D006410 1.2e-132 477.2 364 71.2
Migut.F01613 Erythranthe guttata HOM05D005062 ORTHO05D006410 2.1e-132 476.5 367 71.7
CSS0050380 Camellia sinensis var. sinensis HOM05D005062 ORTHO05D006410 3.5e-132 475.7 421 65.8
CSS0021342 Camellia sinensis var. sinensis HOM05D005062 ORTHO05D006410 1.8e-131 473.4 388 69.3
Medtr1g050462 Medicago truncatula HOM05D005062 ORTHO05D006410 6.7e-131 471.5 394 65.7
THA.LOC104824209 Tarenaya hassleriana HOM05D005062 ORTHO05D006410 1.1e-130 470.7 360 69.7
HanXRQChr08g0217771 Helianthus annuus HOM05D005062 ORTHO05D006410 1.5e-130 470.3 343 73.2
Glyma.10G111800 Glycine max HOM05D005062 ORTHO05D006410 7.4e-130 468.0 410 64.4
Lalb_Chr19g0129181 Lupinus albus HOM05D005062 ORTHO05D006410 1.6e-129 466.8 355 69.6
Phvul.007G247700 Phaseolus vulgaris HOM05D005062 ORTHO05D006410 5.3e-128 461.8 402 64.2
ECA233G2289 Erigeron canadensis HOM05D005062 ORTHO05D006410 9.0e-128 461.1 369 70.2
Nitab4.5_0010225g0010 Nicotiana tabacum HOM05D005062 ORTHO05D006410 3.4e-127 459.1 366 67.5
Lj5g0026270 Lotus japonicus HOM05D005062 ORTHO05D006410 1.7e-126 456.8 426 60.8
Actinidia18593 Actinidia chinensis HOM05D000444 ORTHO05D000489 3.8e-126 455.7 423 61.9
Peaxi162Scf00235g10011 Petunia axillaris HOM05D005062 ORTHO05D006410 8.5e-126 454.5 374 67.1
SalBow6G6867 Salvia bowleyana HOM05D005062 ORTHO05D006410 8.5e-126 454.5 345 69.9
AL5G37480 Arabidopsis lyrata HOM05D005062 ORTHO05D006410 4.2e-125 452.2 403 63.3
Sp5g06340 Schrenkiella parvula HOM05D005062 ORTHO05D006410 9.4e-125 451.1 398 64.6
arahy.Tifrunner.gnm1.ann1.BZ57JC Arachis hypogaea HOM05D005062 ORTHO05D006410 6.1e-124 448.4 359 67.7
CDE06G2329 Ceratophyllum demersum HOM05D005062 ORTHO05D006410 6.1e-124 448.4 392 64.3
MSTRG.8110 Avicennia marina HOM05D005062 ORTHO05D006410 7.9e-124 448.0 334 70.4
Cc02_g09770 Coffea canephora HOM05D005062 ORTHO05D006410 7.9e-124 448.0 316 74.7
AT3G56160 Arabidopsis thaliana HOM05D005062 ORTHO05D006410 1.8e-123 446.8 396 63.6
arahy.Tifrunner.gnm1.ann1.ZAGE2X Arachis hypogaea HOM05D005062 ORTHO05D006410 1.8e-123 446.8 371 66.0
Rhsim03G0099700 Rhododendron simsii HOM05D005062 ORTHO05D006410 3.0e-123 446.0 474 57.4
HanXRQChr11g0342201 Helianthus annuus HOM05D005062 ORTHO05D006410 2.0e-122 443.4 367 66.5
A09p49130 Brassica napus HOM05D002435 ORTHO05D002550 5.7e-122 441.8 363 66.1
BraA09t40366Z Brassica rapa HOM05D005062 ORTHO05D006410 5.7e-122 441.8 363 66.1
Lsat_1_v5_gn_8_23960 Lactuca sativa HOM05D005062 ORTHO05D006410 9.7e-122 441.0 395 62.3
BcaC07g39930 Brassica carinata HOM05D002435 ORTHO05D002550 2.2e-121 439.9 394 62.9
BolC8t50765H Brassica oleracea HOM05D002435 ORTHO05D002550 2.2e-121 439.9 394 62.9
AUR62034504 Chenopodium quinoa HOM05D005062 ORTHO05D006410 6.3e-121 438.3 372 63.4
BcaB01g00026 Brassica carinata HOM05D002435 ORTHO05D002550 2.6e-119 433.0 387 63.6
Lsat_1_v5_gn_2_104621 Lactuca sativa HOM05D005062 ORTHO05D006410 2.6e-119 433.0 365 64.4
C08p31440 Brassica napus HOM05D002435 ORTHO05D002550 5.9e-119 431.8 391 62.4
ATR0081G026 Amborella trichopoda HOM05D005062 ORTHO05D006410 1.7e-118 430.3 351 65.5
GSVIVG01036146001 Vitis vinifera HOM05D005062 ORTHO05D006410 1.7e-118 430.3 394 61.4
ECA238G3155 Erigeron canadensis HOM05D005062 ORTHO05D006410 1.2e-116 424.1 355 64.5
CiPaw.14G101300 Carya illinoinensis HOM05D005062 ORTHO05D006410 5.1e-115 418.7 355 62.8
Os02g0531200 Oryza sativa ssp. japonica HOM05D005062 ORTHO05D006410 1.1e-114 417.5 345 63.5
Thhalv10006005m.g Eutrema salsugineum HOM05D005062 ORTHO05D006410 2.8e-113 412.9 373 64.9
PGR102G2753 Punica granatum HOM05D005062 ORTHO05D006410 7.7e-111 404.8 368 60.6
Sopen07g005620 Solanum pennellii HOM05D000002 ORTHO05D000001 3.2e-109 399.4 340 66.2
HanXRQChr08g0217571 Helianthus annuus HOM05D005062 ORTHO05D006410 4.2e-109 399.1 338 62.1
TPR.G10638 Trifolium pratense HOM05D005062 ORTHO05D006410 4.2e-109 399.1 289 74.0
Eucgr.B03869 Eucalyptus grandis HOM05D005062 ORTHO05D006410 5.5e-109 398.7 337 62.3
HPP92_007815 Vanilla planifolia HOM05D005062 ORTHO05D006410 1.4e-107 394.0 336 63.1
Sed0016949 Sechium edule HOM05D005062 ORTHO05D006410 4.4e-106 389.0 282 74.5
Thecc.10G106400 Theobroma cacao HOM05D005062 ORTHO05D006410 1.7e-102 377.1 316 67.4
EL10As25g24233 Beta vulgaris HOM05D005062 ORTHO05D006410 1.9e-101 373.6 416 52.9
Sc12g0004460 Simmondsia chinensis HOM05D005062 ORTHO05D006410 4.2e-101 372.5 390 55.4
Gohir.D12G091480 Gossypium hirsutum HOM05D005062 ORTHO05D006410 3.0e-99 366.3 319 66.5
Ah.08g215800 Amaranthus hybridus HOM05D005062 ORTHO05D006410 1.4e-96 357.5 389 52.4
Ah.09g232820 Amaranthus hybridus HOM05D005062 ORTHO05D006410 5.0e-94 349.0 374 55.3
Prupe.2G079400 Prunus persica HOM05D005062 ORTHO05D006410 5.0e-94 349.0 259 74.9
Ciclev10032297m.g Citrus clementina HOM05D005062 ORTHO05D006410 2.1e-92 343.6 280 69.3
CiPaw.14G101100 Carya illinoinensis HOM05D005062 ORTHO05D006410 2.0e-90 337.0 360 56.7
Hund06778 Selenicereus undatus HOM05D005062 ORTHO05D006410 4.1e-88 329.3 345 56.5
VMungo0720G3089 Vigna mungo HOM05D000444 ORTHO05D000489 3.5e-87 326.2 502 44.2
MD02G1256100 Malus domestica HOM05D005062 ORTHO05D006410 4.2e-85 319.3 255 70.6
SGA_v2.0_scaffold13G06459 Striga asiatica HOM05D005062 ORTHO05D006410 2.5e-77 293.5 459 45.1
unitig_578.g16343 Utricularia gibba HOM05D005062 ORTHO05D006410 2.1e-76 290.4 342 52.3
Zm00001eb242730 Zea mays HOM05D005062 ORTHO05D006410 1.0e-75 288.1 263 57.4
CARHR166310 Cardamine hirsuta HOM05D005062 ORTHO05D006410 5.2e-75 285.8 220 70.9
AUR62009772 Chenopodium quinoa HOM05D005062 ORTHO05D006410 1.2e-74 284.6 415 45.8
Sc20g0001180 Simmondsia chinensis HOM05D003607 ORTHO05D004049 7.0e-72 275.4 203 73.4
Lj3A928T57 Lonicera japonica HOM05D005062 ORTHO05D006410 5.0e-70 269.2 242 65.3
Zm00001eb296300 Zea mays HOM05D005062 ORTHO05D006410 1.8e-67 260.8 236 58.9
Carub.0005s2291 Capsella rubella HOM05D005062 ORTHO05D006410 3.2e-64 250.0 235 61.7
Haze_02484 Corylus avellana HOM05D005062 ORTHO05D006410 2.7e-63 246.9 243 62.6
EL10Ac7g15813 Beta vulgaris HOM05D005062 ORTHO05D006410 2.3e-62 243.8 402 41.3
Mapoly0046s0115 Marchantia polymorpha HOM05D005062 ORTHO05D006410 1.8e-59 234.2 329 42.9
AagrBONN_evm.TU.Sc2ySwM_117.1142 Anthoceros agrestis HOM05D005062 ORTHO05D006410 9.9e-58 228.4 254 51.6
SMO347G0520 Selaginella moellendorffii HOM05D005062 ORTHO05D006410 1.4e-56 224.6 327 45.0
Duzib128G0173 Durio zibethinus HOM05D005062 ORTHO05D006410 1.6e-55 221.1 236 58.1
AUR62039218 Chenopodium quinoa HOM05D005062 ORTHO05D006410 8.6e-54 215.3 351 41.3
Haze_23392 Corylus avellana HOM05D005062 ORTHO05D006410 9.6e-53 211.8 232 53.9
Pp3c3_30210 Physcomitrium patens HOM05D005062 ORTHO05D006410 2.4e-48 197.2 247 47.8
A02p12720 Brassica napus HOM05D005062 ORTHO05D006410 3.2e-48 196.8 232 56.0
Psat6g129720 Pisum sativum HOM05D005062 ORTHO05D006410 6.0e-47 192.6 154 70.1
Haze_02485 Corylus avellana HOM05D005062 ORTHO05D006410 3.9e-46 189.9 202 54.5
MD02G1256200 Malus domestica HOM05D005062 ORTHO05D006410 6.6e-46 189.1 128 77.3
CBR_g48207 Chara braunii HOM05D000019 ORTHO05D000048 6.2e-44 182.6 210 46.2
PRCOL_00003606 Prasinoderma coloniale HOM05D005062 ORTHO05D006410 5.3e-43 179.5 337 37.7
Cre09.g395700 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 5.8e-42 176.0 393 34.4
QL01p012456 Quercus lobata HOM05D005062 ORTHO05D006410 1.1e-40 171.8 129 69.8
FAN06G0036 Fragaria x ananassa HOM05D005062 ORTHO05D006410 6.0e-39 166.0 124 77.4
FAN06G3794 Fragaria x ananassa HOM05D005062 ORTHO05D006410 7.9e-39 165.6 116 81.9
MCO15G192 Micromonas commoda HOM05D005062 ORTHO05D006410 6.9e-35 152.5 296 33.1
FvH4_7g05870 Fragaria vesca HOM05D005062 ORTHO05D006410 3.4e-34 150.2 117 76.1
Cfa010034 Carpinus fangiana HOM05D005062 ORTHO05D006410 2.9e-33 147.1 118 65.3
FAN01G2457 Fragaria x ananassa HOM05D005062 ORTHO05D006410 3.8e-33 146.7 82 96.3
COL.COLO4_24555 Corchorus olitorius HOM05D005062 ORTHO05D006410 1.1e-32 145.2 103 77.7
Cre09.g393250 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 3.2e-32 143.7 333 33.9
Ciclev10033893m.g Citrus clementina HOM05D005062 ORTHO05D006410 2.1e-31 141.0 104 75.0
Cre02.g147450 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 7.4e-29 132.5 397 30.5
Cre12.g521950 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 7.4e-29 132.5 338 29.3
QL01p012462 Quercus lobata HOM05D005062 ORTHO05D006410 7.4e-29 132.5 143 51.7
Lj3C928T13 Lonicera japonica HOM05D005062 ORTHO05D006410 9.6e-29 132.1 167 52.7
Cre06.g250450 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 1.3e-28 131.7 360 29.2
COL.COLO4_24556 Corchorus olitorius HOM05D005062 ORTHO05D006410 1.3e-25 121.7 83 75.9
ClCG02G008710 Citrullus lanatus HOM05D005062 ORTHO05D006410 2.3e-22 110.9 149 46.3
RcHm_v2.0_Chr1g0332551 Rosa chinensis HOM05D005062 ORTHO05D006410 1.9e-21 107.8 60 90.0
BraA02t06329Z Brassica rapa HOM05D005062 ORTHO05D006410 7.4e-21 105.9 80 72.5
FAN01G2288 Fragaria x ananassa HOM05D005062 ORTHO05D006410 9.6e-21 105.5 55 98.2
Ca_00262_v3 Cicer arietinum L. HOM05D005062 ORTHO05D006410 8.2e-20 102.4 121 45.5
GSVIVG01034679001 Vitis vinifera HOM05D005062 ORTHO05D006410 1.1e-19 102.1 68 82.4
Psat6g129760 Pisum sativum HOM05D005062 ORTHO05D006410 1.4e-19 101.7 149 43.6
Haze_23393 Corylus avellana HOM05D005062 ORTHO05D006410 7.6e-18 95.9 94 57.4
Hma1.2p1_0165F.1_g073310 Hydrangea macrophylla HOM05D005062 ORTHO05D006410 6.5e-17 92.8 66 72.7
Hma1.2p1_1068F.1_g253985 Hydrangea macrophylla HOM05D005062 ORTHO05D006410 6.5e-17 92.8 92 56.5
RcHm_v2.0_Chr1g0332541 Rosa chinensis HOM05D005062 ORTHO05D006410 1.1e-16 92.0 62 75.8
SEGI_26426 Sequoiadendron giganteum HOM05D005062 ORTHO05D006410 3.2e-16 90.5 74 60.8
Hund18750 Selenicereus undatus HOM05D005062 ORTHO05D006410 3.5e-15 87.0 139 38.8
Dinv42565 Davidia involucrata HOM05D005062 ORTHO05D006410 6.7e-14 82.8 116 47.4
SEGI_01082 Sequoiadendron giganteum HOM05D005062 ORTHO05D006410 4.3e-13 80.1 59 71.2
MCO11G881 Micromonas commoda HOM05D005062 ORTHO05D028578 1.0e-09 68.9 356 26.1
Ca_12794_v3 Cicer arietinum L. HOM05D005062 ORTHO05D006410 2.2e-09 67.8 55 65.5
SEGI_13629 Sequoiadendron giganteum HOM05D005062 ORTHO05D006410 1.1e-08 65.5 57 59.6
CDE08G0076 Ceratophyllum demersum HOM05D005062 ORTHO05D006410 4.2e-08 63.5 35 85.7
MELO3C034937.2 Cucumis melo HOM05D005062 ORTHO05D006410 4.2e-08 63.5 69 58.0
DCAR_017587 Daucus carota HOM05D000943 ORTHO05D008314 1.2e-07 62.0 384 22.4
FAN19G1644 Fragaria x ananassa HOM05D004979 ORTHO05D006190 2.1e-07 61.2 59 59.3
Cre02.g095085 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D028578 2.7e-07 60.8 206 26.2
Cre02.g095086 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D028578 2.7e-07 60.8 238 26.5


User provided reference genes

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