Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G1071 Fragaria x ananassa HOM05D004234 ORTHO05D004670 2.5e-206 721.8 364 100.0
FAN03G0204 Fragaria x ananassa HOM05D004234 ORTHO05D004670 1.2e-142 510.4 399 72.7
FvH4_7g27310 Fragaria vesca HOM05D004234 ORTHO05D004670 1.3e-133 480.3 391 70.6
FAN06G0557 Fragaria x ananassa HOM05D004234 ORTHO05D004670 2.1e-131 473.0 390 69.2
RcHm_v2.0_Chr1g0374151 Rosa chinensis HOM05D004234 ORTHO05D004670 6.6e-122 441.4 387 65.4
FAN03G2107 Fragaria x ananassa HOM05D002503 ORTHO05D004670 6.2e-120 434.9 364 69.0
FAN10G3280 Fragaria x ananassa HOM05D002503 ORTHO05D004670 3.1e-119 432.6 364 69.2
FAN06G1565 Fragaria x ananassa HOM05D004234 ORTHO05D004670 5.6e-113 411.8 313 73.5
MD07G1252600 Malus domestica HOM05D004234 ORTHO05D004670 8.7e-98 361.3 396 56.1
FvH4_7g05310 Fragaria vesca HOM05D004234 ORTHO05D004670 4.0e-95 352.4 377 54.9
FAN03G3162 Fragaria x ananassa HOM05D004234 ORTHO05D004670 4.0e-95 352.4 377 54.9
Hma1.2p1_0432F.1_g151850 Hydrangea macrophylla HOM05D004234 ORTHO05D004670 1.2e-94 350.9 402 51.7
FAN10G4258 Fragaria x ananassa HOM05D004234 ORTHO05D004670 2.0e-94 350.1 377 54.6
Prupe.2G276100 Prunus persica HOM05D004234 ORTHO05D004670 1.0e-93 347.8 375 56.5
COL.COLO4_14105 Corchorus olitorius HOM05D004234 ORTHO05D004670 1.3e-93 347.4 403 51.6
Potri.001G125700 Populus trichocarpa HOM05D004234 ORTHO05D004670 3.2e-92 342.8 403 50.6
Peaxi162Scf00241g00030 Petunia axillaris HOM05D004234 ORTHO05D004670 4.2e-92 342.4 416 50.2
GSVIVG01014047001 Vitis vinifera HOM05D004234 ORTHO05D004670 5.5e-92 342.0 407 50.9
CSS0018772 Camellia sinensis var. sinensis HOM05D004234 ORTHO05D004670 7.1e-92 341.7 405 49.9
QL09p005405 Quercus lobata HOM05D004234 ORTHO05D004670 9.3e-92 341.3 406 50.5
RcHm_v2.0_Chr1g0331961 Rosa chinensis HOM05D004234 ORTHO05D004670 9.3e-92 341.3 393 51.7
Lj1A979T78 Lonicera japonica HOM05D004234 ORTHO05D004670 1.2e-91 340.9 402 49.8
Thecc.03G153900 Theobroma cacao HOM05D004234 ORTHO05D004670 1.6e-91 340.5 404 50.7
TWI39G0359 Tripterygium wilfordii HOM05D004234 ORTHO05D004670 1.6e-91 340.5 406 50.5
Dinv06568 Davidia involucrata HOM05D004234 ORTHO05D004670 2.1e-91 340.1 405 49.9
Gohir.A03G059300 Gossypium hirsutum HOM05D004234 ORTHO05D004670 2.1e-91 340.1 397 51.6
Lsat_1_v5_gn_1_117561 Lactuca sativa HOM05D004234 ORTHO05D004670 2.1e-91 340.1 370 53.5
Gohir.D03G106600 Gossypium hirsutum HOM05D004234 ORTHO05D004670 2.7e-91 339.7 397 51.4
Sopen03g024080 Solanum pennellii HOM05D004234 ORTHO05D004670 2.7e-91 339.7 398 50.3
Prupe.2G276000 Prunus persica HOM05D004234 ORTHO05D004670 3.5e-91 339.3 403 51.1
Sabra03G0074900 Salix brachista HOM05D004234 ORTHO05D004670 3.5e-91 339.3 403 50.6
Ciclev10004769m.g Citrus clementina HOM05D004234 ORTHO05D004670 4.6e-91 339.0 404 50.2
Duzib084G1335 Durio zibethinus HOM05D004234 ORTHO05D004670 4.6e-91 339.0 401 50.9
Gorai.003G113100 Gossypium raimondii HOM05D004234 ORTHO05D004670 4.6e-91 339.0 399 51.4
Nitab4.5_0002816g0120 Nicotiana tabacum HOM05D004234 ORTHO05D004670 4.6e-91 339.0 407 50.1
Manes.06G133800 Manihot esculenta HOM05D004234 ORTHO05D004670 6.0e-91 338.6 404 51.0
Solyc03g093300.3 Solanum lycopersicum HOM05D004234 ORTHO05D004670 7.9e-91 338.2 398 50.3
Potri.003G108000 Populus trichocarpa HOM05D004234 ORTHO05D004670 1.0e-90 337.8 451 47.0
MD07G1252500 Malus domestica HOM05D004234 ORTHO05D004670 1.3e-90 337.4 401 51.4
MD01G1182200 Malus domestica HOM05D004234 ORTHO05D004670 3.0e-90 336.3 399 51.4
ClCG09G013080 Citrullus lanatus HOM05D004234 ORTHO05D004670 5.1e-90 335.5 412 49.5
Gohir.A12G198000 Gossypium hirsutum HOM05D004234 ORTHO05D004670 8.7e-90 334.7 397 49.9
ECA233G5771 Erigeron canadensis HOM05D004234 ORTHO05D004670 1.1e-89 334.3 399 50.1
Glyma.09G229600 Glycine max HOM05D004234 ORTHO05D004670 1.5e-89 334.0 402 51.0
Sc19g0002070 Simmondsia chinensis HOM05D004234 ORTHO05D004670 1.5e-89 334.0 402 50.5
Lj3g0001566 Lotus japonicus HOM05D004234 ORTHO05D004670 1.9e-89 333.6 396 52.0
Lalb_Chr01g0000341 Lupinus albus HOM05D004234 ORTHO05D004670 1.9e-89 333.6 399 51.1
VMungo1127G0923 Vigna mungo HOM05D004234 ORTHO05D004670 1.9e-89 333.6 395 50.9
Actinidia31776 Actinidia chinensis HOM05D004234 ORTHO05D004670 2.5e-89 333.2 407 49.1
Nn6g33942 Nelumbo nucifera HOM05D004234 ORTHO05D004670 2.5e-89 333.2 408 49.0
Gohir.D12G200600 Gossypium hirsutum HOM05D004234 ORTHO05D004670 4.3e-89 332.4 397 49.6
Gorai.008G215700 Gossypium raimondii HOM05D004234 ORTHO05D004670 4.3e-89 332.4 397 49.6
Aqoxy1G01638 Aquilegia oxysepala HOM05D004234 ORTHO05D004670 5.7e-89 332.0 406 49.3
Aqoxy5G04150 Aquilegia oxysepala HOM05D004234 ORTHO05D004670 5.7e-89 332.0 406 49.3
Medtr4g036835 Medicago truncatula HOM05D004234 ORTHO05D004670 5.7e-89 332.0 402 50.2
CsaV3_3G050070 Cucumis sativus L. HOM05D004234 ORTHO05D004670 7.4e-89 331.6 406 49.8
Actinidia13581 Actinidia chinensis HOM05D004234 ORTHO05D004670 1.3e-88 330.9 405 48.6
DCAR_014620 Daucus carota HOM05D004234 ORTHO05D004670 1.3e-88 330.9 394 49.7
HanXRQChr05g0142531 Helianthus annuus HOM05D004234 ORTHO05D004670 1.3e-88 330.9 401 49.6
Lsat_1_v5_gn_9_51980 Lactuca sativa HOM05D004234 ORTHO05D004670 1.3e-88 330.9 345 55.9
Atru.chr1.756 Acer truncatum HOM05D004234 ORTHO05D004670 1.6e-88 330.5 400 50.0
arahy.Tifrunner.gnm1.ann1.WXBJ4D Arachis hypogaea HOM05D004234 ORTHO05D004670 2.8e-88 329.7 401 50.1
Sed0010040 Sechium edule HOM05D004234 ORTHO05D004670 2.8e-88 329.7 404 48.8
Phvul.011G007500 Phaseolus vulgaris HOM05D004234 ORTHO05D004670 6.2e-88 328.6 404 50.2
Oeu028187.2 Olea europaea HOM05D004234 ORTHO05D004670 8.2e-88 328.2 404 48.8
arahy.Tifrunner.gnm1.ann1.11333K Arachis hypogaea HOM05D004234 ORTHO05D004670 1.1e-87 327.8 405 49.4
unitig_46.g18765 Utricularia gibba HOM05D004234 ORTHO05D004670 1.1e-87 327.8 400 49.2
SalBow8G0184 Salvia bowleyana HOM05D004234 ORTHO05D004670 1.4e-87 327.4 393 49.9
SalBow8G4519 Salvia bowleyana HOM05D004234 ORTHO05D004670 1.4e-87 327.4 393 49.9
Migut.F00484 Erythranthe guttata HOM05D004234 ORTHO05D004670 1.8e-87 327.0 413 47.7
BcaC06g33234 Brassica carinata HOM05D004234 ORTHO05D004670 9.0e-87 324.7 390 49.2
Cc02_g04370 Coffea canephora HOM05D004234 ORTHO05D004670 9.0e-87 324.7 402 49.8
Psat7g159560 Pisum sativum HOM05D004234 ORTHO05D004670 9.0e-87 324.7 412 48.8
BolC7t45034H Brassica oleracea HOM05D004234 ORTHO05D004670 1.2e-86 324.3 391 49.1
Carub.0008s2213 Capsella rubella HOM05D004234 ORTHO05D004670 1.2e-86 324.3 390 47.9
PSO238G0034 Papaver somniferum HOM05D004234 ORTHO05D004670 1.2e-86 324.3 407 47.4
C07p45120 Brassica napus HOM05D004234 ORTHO05D004670 2.0e-86 323.6 390 49.0
ATR0317G048 Amborella trichopoda HOM05D004234 ORTHO05D004670 5.8e-86 322.0 407 48.4
AT5G61450 Arabidopsis thaliana HOM05D004234 ORTHO05D004670 1.3e-85 320.9 394 47.7
TAR636G1879 Trochodendron aralioides HOM05D004234 ORTHO05D004670 1.7e-85 320.5 406 47.5
HPP92_020352 Vanilla planifolia HOM05D004234 ORTHO05D004670 1.7e-85 320.5 407 48.9
BcaC06g33149 Brassica carinata HOM05D004234 ORTHO05D004670 2.2e-85 320.1 391 47.8
A03p47040 Brassica napus HOM05D004234 ORTHO05D004670 2.9e-85 319.7 395 48.1
BraA03t13827Z Brassica rapa HOM05D004234 ORTHO05D004670 2.9e-85 319.7 395 48.1
PGR042G3222 Punica granatum HOM05D004234 ORTHO05D004670 3.8e-85 319.3 407 48.4
Sp2g24650 Schrenkiella parvula HOM05D004234 ORTHO05D004670 3.8e-85 319.3 396 48.2
Thhalv10004229m.g Eutrema salsugineum HOM05D004234 ORTHO05D004670 8.4e-85 318.2 397 47.6
AL8G38140 Arabidopsis lyrata HOM05D004234 ORTHO05D004670 1.2e-83 314.3 394 46.7
SGA_v2.0_scaffold2G01218 Striga asiatica HOM05D004234 ORTHO05D004670 1.6e-83 313.9 421 47.0
Eucgr.H04780 Eucalyptus grandis HOM05D004234 ORTHO05D004670 6.1e-83 312.0 404 47.5
CAN.G48.41 Capsicum annuum HOM05D004234 ORTHO05D004670 1.3e-82 310.8 313 56.5
Sed0020354 Sechium edule HOM05D004234 ORTHO05D004670 3.9e-82 309.3 406 46.6
Hund11832 Selenicereus undatus HOM05D004234 ORTHO05D004670 6.7e-82 308.5 420 47.6
AUR62015488 Chenopodium quinoa HOM05D004234 ORTHO05D004670 3.3e-81 306.2 440 44.5
Glyma.12G006700 Glycine max HOM05D004234 ORTHO05D004670 5.7e-81 305.4 402 48.5
Zm00001eb404400 Zea mays HOM05D004234 ORTHO05D004670 1.6e-80 303.9 414 45.7
Rhsim09G0190900 Rhododendron simsii HOM05D004234 ORTHO05D004670 2.2e-80 303.5 509 41.3
Os03g0102400 Oryza sativa ssp. japonica HOM05D004234 ORTHO05D004670 3.7e-80 302.8 406 45.6
Os07g0466200 Oryza sativa ssp. japonica HOM05D004234 ORTHO05D004670 3.7e-80 302.8 405 46.4
MELO3C003311.2 Cucumis melo HOM05D004234 ORTHO05D004670 8.2e-80 301.6 477 42.6
Pp3c2_13380 Physcomitrium patens HOM05D004234 ORTHO05D004670 1.1e-79 301.2 359 49.3
Ca_25531_v3 Cicer arietinum L. HOM05D004234 ORTHO05D004670 2.4e-79 300.1 381 49.6
Pp3c17_11550 Physcomitrium patens HOM05D004234 ORTHO05D004670 2.4e-79 300.1 360 48.1
PSO210G3536 Papaver somniferum HOM05D004234 ORTHO05D004670 4.1e-79 299.3 407 45.0
Pp3c14_12080 Physcomitrium patens HOM05D004234 ORTHO05D004670 4.1e-79 299.3 360 49.7
Nitab4.5_0003490g0020 Nicotiana tabacum HOM05D004234 ORTHO05D004670 2.6e-78 296.6 378 48.7
Lsat_1_v5_gn_8_8740 Lactuca sativa HOM05D004234 ORTHO05D004670 3.8e-77 292.7 357 49.3
Nn1g00980 Nelumbo nucifera HOM05D004234 ORTHO05D004670 1.4e-76 290.8 395 46.1
Lsat_1_v5_gn_1_117520 Lactuca sativa HOM05D004234 ORTHO05D004670 1.9e-76 290.4 330 51.8
Nitab4.5_0000262g0110 Nicotiana tabacum HOM05D004234 ORTHO05D004670 3.2e-76 289.7 411 44.3
Aa31LG11G1950 Aethionema arabicum HOM05D004234 ORTHO05D004670 1.2e-75 287.7 411 43.8
SMO357G0012 Selaginella moellendorffii HOM05D004234 ORTHO05D004670 3.0e-74 283.1 353 47.3
Medtr1g056720 Medicago truncatula HOM05D004234 ORTHO05D004670 1.5e-73 280.8 374 47.3
CAN.G330.4 Capsicum annuum HOM05D004234 ORTHO05D004670 2.6e-70 270.0 317 49.8
AagrBONN_evm.TU.Sc2ySwM_117.258 Anthoceros agrestis HOM05D004234 ORTHO05D004670 4.2e-68 262.7 429 41.0
Mapoly0072s0015 Marchantia polymorpha HOM05D004234 ORTHO05D004670 4.2e-68 262.7 490 36.1
FAN01G2714 Fragaria x ananassa HOM05D004234 ORTHO05D004670 2.7e-67 260.0 377 43.8
Ah.07g207720 Amaranthus hybridus HOM05D004234 ORTHO05D004670 3.0e-66 256.5 427 42.2
Peaxi162Scf00304g01343 Petunia axillaris HOM05D004234 ORTHO05D004670 3.0e-66 256.5 388 42.0
CiPaw.04G059200 Carya illinoinensis HOM05D004234 ORTHO05D004670 1.7e-64 250.8 231 60.6
Duzib205G0275 Durio zibethinus HOM05D004234 ORTHO05D004670 2.2e-64 250.4 355 45.9
AUR62002211 Chenopodium quinoa HOM05D004234 ORTHO05D004670 2.2e-61 240.4 206 64.1
Lj8A43G57 Lonicera japonica HOM05D004234 ORTHO05D004670 2.2e-61 240.4 380 42.6
EL10Ac3g05852 Beta vulgaris HOM05D004234 ORTHO05D004670 2.9e-61 240.0 407 40.5
C07p40880 Brassica napus HOM05D004234 ORTHO05D004670 2.9e-61 240.0 368 42.1
SMO203G0101 Selaginella moellendorffii HOM05D004234 ORTHO05D004670 5.5e-60 235.7 243 51.9
Sabra01G0096800 Salix brachista HOM05D004234 ORTHO05D004670 1.4e-55 221.1 208 58.7
arahy.Tifrunner.gnm1.ann1.EHKS3S Arachis hypogaea HOM05D004234 ORTHO05D004670 2.0e-54 217.2 272 47.4
BolC7t44614H Brassica oleracea HOM05D004234 ORTHO05D004670 1.7e-53 214.2 369 38.8
CBR_g12525 Chara braunii HOM05D004234 ORTHO05D004670 2.1e-51 207.2 208 55.8
CARHR275210 Cardamine hirsuta HOM05D004234 ORTHO05D004670 8.0e-51 205.3 243 46.5
Lsat_1_v5_gn_1_117540 Lactuca sativa HOM05D004234 ORTHO05D004670 1.4e-50 204.5 168 64.3
BcaNung02453 Brassica carinata HOM05D004234 ORTHO05D004670 8.8e-50 201.8 291 42.6
Solyc06g034180.2 Solanum lycopersicum HOM05D004234 ORTHO05D004670 2.0e-46 190.7 318 40.9
Cpa.g.sc4200.1 Carica papaya HOM05D004234 ORTHO05D004670 2.1e-43 180.6 107 83.2
Nitab4.5_0000448g0090 Nicotiana tabacum HOM05D004234 ORTHO05D004670 1.0e-42 178.3 288 39.6
PGSC0003DMG400021593 Solanum tuberosum HOM05D004234 ORTHO05D004670 3.7e-40 169.9 385 33.5
SHI13981 Sapria himalayana HOM05D004234 ORTHO05D004670 8.3e-40 168.7 201 49.8
Sopen06g015930 Solanum pennellii HOM05D004234 ORTHO05D000001 1.1e-28 131.7 89 70.8
vmacro09913 Vaccinium macrocarpon HOM05D004234 ORTHO05D004670 1.7e-24 117.9 194 39.2
Cre03.g201000 Chlamydomonas reinhardtii HOM05D004234 ORTHO05D004670 2.4e-23 114.0 170 41.8
Haze_13877 Corylus avellana HOM05D004234 ORTHO05D004670 7.8e-22 109.0 191 37.7
FvH4_2g12100 Fragaria vesca HOM05D004234 ORTHO05D004670 2.1e-19 100.9 112 49.1
FvH4_c2g00051 Fragaria vesca HOM05D004234 ORTHO05D004670 6.8e-18 95.9 70 67.1
Gorai.011G181500 Gossypium raimondii HOM05D001733 ORTHO05D004670 7.5e-17 92.4 62 75.8
Cpa.g.c29748.2 Carica papaya HOM05D004234 ORTHO05D004670 9.8e-17 92.0 53 81.1
CSS0026342 Camellia sinensis var. sinensis HOM05D004234 ORTHO05D004670 2.9e-16 90.5 66 66.7
BolC1t03363H Brassica oleracea HOM05D004234 ORTHO05D004670 3.2e-15 87.0 66 59.1
Gorai.009G415200 Gossypium raimondii HOM05D004234 ORTHO05D004670 3.2e-15 87.0 51 80.4
arahy.Tifrunner.gnm1.ann1.J8KP6L Arachis hypogaea HOM05D004234 ORTHO05D004670 1.2e-14 85.1 114 46.5
Gorai.012G056500 Gossypium raimondii HOM05D004234 ORTHO05D004670 1.6e-14 84.7 51 78.4
FvH4_3g27272 Fragaria vesca HOM05D004234 ORTHO05D004670 3.5e-14 83.6 60 68.3
Gohir.D04G050932 Gossypium hirsutum HOM05D004234 ORTHO05D004670 4.6e-14 83.2 55 72.7
Migut.L01142 Erythranthe guttata HOM05D004234 ORTHO05D004670 1.0e-13 82.0 67 58.2
arahy.Tifrunner.gnm1.ann1.F7NEP8 Arachis hypogaea HOM05D004234 ORTHO05D004670 2.3e-13 80.9 52 73.1
arahy.Tifrunner.gnm1.ann1.AYL6ZU Arachis hypogaea HOM05D004234 ORTHO05D004670 3.9e-13 80.1 101 48.5
SEGI_30601 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 1.9e-12 77.8 59 67.8
Gohir.D11G243650 Gossypium hirsutum HOM05D001733 ORTHO05D004670 2.5e-12 77.4 51 72.5
Dinv16843 Davidia involucrata HOM05D004234 ORTHO05D004670 3.6e-11 73.6 50 68.0
SEGI_33806 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 2.6e-09 67.4 49 59.2
FvH4_5g28373 Fragaria vesca HOM05D004234 ORTHO05D004670 6.4e-08 62.8 157 33.1
Cpa.g.sc111.54 Carica papaya HOM05D004234 ORTHO05D004670 1.6e-06 58.2 69 47.8


User provided reference genes

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