Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G1025 Fragaria x ananassa HOM05D002804 ORTHO05D003755 6.3e-126 454.1 233 100.0
FvH4_7g08990 Fragaria vesca HOM05D002804 ORTHO05D003755 1.8e-96 356.3 237 80.6
FAN13G0623 Fragaria x ananassa HOM05D002804 ORTHO05D003755 7.5e-87 324.3 233 74.7
FvH4_5g05670 Fragaria vesca HOM05D002804 ORTHO05D003755 3.2e-85 318.9 233 73.8
FAN13G1580 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.2e-81 307.0 192 81.8
RcHm_v2.0_Chr7g0193131 Rosa chinensis HOM05D002804 ORTHO05D003755 5.2e-80 301.6 238 67.6
FAN06G4842 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.5e-79 300.1 237 71.7
FAN18G0864 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.1e-77 293.9 226 69.0
FAN03G0147 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.0e-67 260.8 188 76.6
FvH4_5g05700 Fragaria vesca HOM05D002804 ORTHO05D003755 4.2e-61 238.8 178 70.2
FAN08G1215 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.7e-60 236.1 228 59.2
FAN04G1488 Fragaria x ananassa HOM05D002804 ORTHO05D003755 5.5e-45 185.3 194 55.7
FvH4_7g08991 Fragaria vesca HOM05D002804 ORTHO05D003755 2.5e-21 106.7 202 36.6
MD16G1177800 Malus domestica HOM05D002804 ORTHO05D003755 7.2e-21 105.1 141 44.0
RcHm_v2.0_Chr3g0459181 Rosa chinensis HOM05D002804 ORTHO05D003755 5.2e-19 99.0 193 35.8
RcHm_v2.0_Chr7g0236191 Rosa chinensis HOM05D002804 ORTHO05D022637 1.7e-17 94.0 171 38.0
RcHm_v2.0_Chr0c11g0499461 Rosa chinensis HOM05D002804 ORTHO05D003755 2.2e-17 93.6 171 38.0
RcHm_v2.0_Chr3g0459231 Rosa chinensis HOM05D002804 ORTHO05D003755 6.3e-17 92.0 204 33.8
FAN12G4232 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.8e-16 90.5 115 47.8
FvH4_4g16590 Fragaria vesca HOM05D002804 ORTHO05D003755 2.4e-16 90.1 115 47.8
Os06g0308200 Oryza sativa ssp. japonica HOM05D002804 ORTHO05D003755 4.1e-16 89.4 140 42.1
RcHm_v2.0_Chr3g0459201 Rosa chinensis HOM05D002804 ORTHO05D003755 9.1e-16 88.2 214 33.6
FvH4_5g35080 Fragaria vesca HOM05D002804 ORTHO05D003755 2.0e-15 87.0 140 41.4
FvH4_5g35070 Fragaria vesca HOM05D002804 ORTHO05D029636 5.9e-15 85.5 138 42.8
RcHm_v2.0_Chr3g0459161 Rosa chinensis HOM05D002804 ORTHO05D003755 5.9e-15 85.5 140 40.7
FAN05G2457 Fragaria x ananassa HOM05D002804 ORTHO05D003755 7.7e-15 85.1 199 35.2
FAN18G3080 Fragaria x ananassa HOM05D002804 ORTHO05D003755 7.7e-15 85.1 130 40.8
FAN14G5607 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.7e-14 84.0 164 37.8
RcHm_v2.0_Chr7g0236171 Rosa chinensis HOM05D002804 ORTHO05D003755 1.7e-14 84.0 162 35.8
FvH4_6g08870 Fragaria vesca HOM05D002804 ORTHO05D003755 2.2e-14 83.6 200 35.5
Peaxi162Scf01065g00002 Petunia axillaris HOM05D002804 ORTHO05D003755 2.9e-14 83.2 160 37.5
RcHm_v2.0_Chr0c11g0499411 Rosa chinensis HOM05D002804 ORTHO05D003755 2.9e-14 83.2 177 35.6
FAN13G1711 Fragaria x ananassa HOM05D002804 ORTHO05D003755 3.8e-14 82.8 155 38.1
FAN13G2866 Fragaria x ananassa HOM05D002804 ORTHO05D003755 5.0e-14 82.4 130 40.0
RcHm_v2.0_Chr7g0235871 Rosa chinensis HOM05D002804 ORTHO05D003755 1.5e-13 80.9 167 35.9
FAN08G1735 Fragaria x ananassa HOM05D002804 ORTHO05D003755 5.5e-13 79.0 139 37.4
Peaxi162Scf00194g00625 Petunia axillaris HOM05D002804 ORTHO05D003755 5.5e-13 79.0 172 34.9
Peaxi162Scf00194g00635 Petunia axillaris HOM05D002804 ORTHO05D003755 5.5e-13 79.0 172 34.9
Solyc01g102470.2 Solanum lycopersicum HOM05D002804 ORTHO05D003755 5.5e-13 79.0 207 32.4
RcHm_v2.0_Chr1g0342991 Rosa chinensis HOM05D002804 ORTHO05D003755 9.4e-13 78.2 112 42.0
Sopen01g044910 Solanum pennellii HOM05D002804 ORTHO05D003755 9.4e-13 78.2 205 32.2
Dinv30965 Davidia involucrata HOM05D002804 ORTHO05D003755 1.2e-12 77.8 125 41.6
FAN08G2676 Fragaria x ananassa HOM05D002804 ORTHO05D025426 2.1e-12 77.0 155 34.8
RcHm_v2.0_Chr0c11g0499481 Rosa chinensis HOM05D002804 ORTHO05D003755 2.1e-12 77.0 166 35.5
RcHm_v2.0_Chr7g0218381 Rosa chinensis HOM05D002804 ORTHO05D003755 2.1e-12 77.0 123 37.4
RcHm_v2.0_Chr7g0236241 Rosa chinensis HOM05D002804 ORTHO05D003755 2.1e-12 77.0 166 35.5
RcHm_v2.0_Chr3g0457771 Rosa chinensis HOM05D002804 ORTHO05D003755 2.7e-12 76.6 172 32.0
RcHm_v2.0_Chr7g0236051 Rosa chinensis HOM05D002804 ORTHO05D003755 3.6e-12 76.3 226 30.1
Nitab4.5_0004090g0070 Nicotiana tabacum HOM05D002804 ORTHO05D003755 4.7e-12 75.9 158 37.3
FAN18G1408 Fragaria x ananassa HOM05D002804 ORTHO05D022637 6.1e-12 75.5 102 44.1
RcHm_v2.0_Chr7g0235851 Rosa chinensis HOM05D002804 ORTHO05D003755 6.1e-12 75.5 164 34.1
DCAR_003256 Daucus carota HOM05D002804 ORTHO05D003755 8.0e-12 75.1 150 35.3
FvH4_5g34930 Fragaria vesca HOM05D002804 ORTHO05D025426 1.0e-11 74.7 182 31.3
RcHm_v2.0_Chr0c11g0499321 Rosa chinensis HOM05D002804 ORTHO05D029636 1.0e-11 74.7 102 43.1
RcHm_v2.0_Chr7g0236101 Rosa chinensis HOM05D002804 ORTHO05D029636 1.0e-11 74.7 102 43.1
RcHm_v2.0_Chr0c11g0499401 Rosa chinensis HOM05D002804 ORTHO05D022637 1.4e-11 74.3 107 43.9
RcHm_v2.0_Chr0c11g0499511 Rosa chinensis HOM05D002804 ORTHO05D003755 1.4e-11 74.3 210 29.5
RcHm_v2.0_Chr7g0235971 Rosa chinensis HOM05D002804 ORTHO05D003755 1.4e-11 74.3 176 31.8
RcHm_v2.0_Chr7g0235991 Rosa chinensis HOM05D002804 ORTHO05D003755 1.4e-11 74.3 145 35.2
unitig_22.g5757 Utricularia gibba HOM05D002804 ORTHO05D003755 1.4e-11 74.3 160 34.4
Zm00001eb429950 Zea mays HOM05D002804 ORTHO05D003755 1.4e-11 74.3 117 41.9
FAN05G1021 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.3e-11 73.6 127 39.4
RcHm_v2.0_Chr1g0342791 Rosa chinensis HOM05D002804 ORTHO05D003755 2.3e-11 73.6 97 45.4
RcHm_v2.0_Chr3g0459171 Rosa chinensis HOM05D002804 ORTHO05D003755 2.3e-11 73.6 169 31.4
RcHm_v2.0_Chr7g0236031 Rosa chinensis HOM05D002804 ORTHO05D003755 2.3e-11 73.6 138 34.8
FvH4_5g35254 Fragaria vesca HOM05D002804 ORTHO05D022637 3.0e-11 73.2 102 43.1
RcHm_v2.0_Chr0c11g0499471 Rosa chinensis HOM05D002804 ORTHO05D003755 3.0e-11 73.2 156 34.0
FAN18G3994 Fragaria x ananassa HOM05D002804 ORTHO05D003755 4.0e-11 72.8 139 36.7
Lj5A312T57 Lonicera japonica HOM05D002804 ORTHO05D003755 4.0e-11 72.8 175 33.7
FvH4_5g31080 Fragaria vesca HOM05D002804 ORTHO05D003755 5.2e-11 72.4 170 33.5
FAN04G0362 Fragaria x ananassa HOM05D002804 ORTHO05D003755 5.2e-11 72.4 119 41.2
Cfa009693 Carpinus fangiana HOM05D002804 ORTHO05D003755 8.8e-11 71.6 138 33.3
FvH4_6g08940 Fragaria vesca HOM05D002804 ORTHO05D003755 8.8e-11 71.6 205 29.3
FvH4_6g08960 Fragaria vesca HOM05D002804 ORTHO05D003755 8.8e-11 71.6 125 39.2
Nitab4.5_0004889g0010 Nicotiana tabacum HOM05D002804 ORTHO05D003755 8.8e-11 71.6 210 31.0
Gohir.A09G116900 Gossypium hirsutum HOM05D002804 ORTHO05D003755 1.2e-10 71.2 137 37.2
RcHm_v2.0_Chr7g0236021 Rosa chinensis HOM05D002804 ORTHO05D003755 1.2e-10 71.2 185 30.8
FvH4_5g34900 Fragaria vesca HOM05D002804 ORTHO05D025426 2.0e-10 70.5 155 33.5
FAN02G4619 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.0e-10 70.5 209 29.2
FAN04G3225 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.0e-10 70.5 136 37.5
RcHm_v2.0_Chr0c11g0499501 Rosa chinensis HOM05D002804 ORTHO05D003755 2.0e-10 70.5 143 35.0
RcHm_v2.0_Chr7g0236071 Rosa chinensis HOM05D002804 ORTHO05D003755 2.0e-10 70.5 166 31.9
RcHm_v2.0_Chr7g0236591 Rosa chinensis HOM05D002804 ORTHO05D003755 2.6e-10 70.1 138 35.5
FvH4_5g35000 Fragaria vesca HOM05D002804 ORTHO05D003755 3.3e-10 69.7 139 36.0
FAN14G2492 Fragaria x ananassa HOM05D002804 ORTHO05D003755 3.3e-10 69.7 125 38.4
PGR119G1767 Punica granatum HOM05D002804 ORTHO05D003755 4.4e-10 69.3 124 35.5
FvH4_5g35330 Fragaria vesca HOM05D002804 ORTHO05D003755 5.7e-10 68.9 145 37.9
FAN18G4091 Fragaria x ananassa HOM05D002804 ORTHO05D003755 5.7e-10 68.9 119 38.7
RcHm_v2.0_Chr7g0235901 Rosa chinensis HOM05D002804 ORTHO05D003755 5.7e-10 68.9 138 33.3
FvH4_5g34950 Fragaria vesca HOM05D002804 ORTHO05D003755 7.5e-10 68.6 124 34.7
FAN18G1608 Fragaria x ananassa HOM05D002804 ORTHO05D003755 7.5e-10 68.6 156 35.3
FAN18G3851 Fragaria x ananassa HOM05D002804 ORTHO05D003755 7.5e-10 68.6 118 39.8
FAN18G3114 Fragaria x ananassa HOM05D002804 ORTHO05D003755 9.7e-10 68.2 97 42.3
RcHm_v2.0_Chr7g0235921 Rosa chinensis HOM05D002804 ORTHO05D003755 9.7e-10 68.2 138 33.3
RcHm_v2.0_Chr7g0235941 Rosa chinensis HOM05D002804 ORTHO05D003755 9.7e-10 68.2 140 33.6
RcHm_v2.0_Chr7g0236331 Rosa chinensis HOM05D002804 ORTHO05D003755 9.7e-10 68.2 159 31.4
FAN18G3590 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.3e-09 67.8 180 33.3
MD16G1193600 Malus domestica HOM05D002804 ORTHO05D003755 1.3e-09 67.8 203 28.6
Haze_23044 Corylus avellana HOM05D004763 ORTHO05D007492 1.7e-09 67.4 121 36.4
FAN03G3123 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.7e-09 67.4 190 31.6
Glyma.20G089500 Glycine max HOM05D002804 ORTHO05D003755 1.7e-09 67.4 115 37.4
RcHm_v2.0_Chr7g0235881 Rosa chinensis HOM05D002804 ORTHO05D003755 2.2e-09 67.0 138 32.6
RcHm_v2.0_Chr7g0235981 Rosa chinensis HOM05D002804 ORTHO05D003755 2.8e-09 66.6 138 36.2
AL6G13060 Arabidopsis lyrata HOM05D002804 ORTHO05D003755 3.7e-09 66.2 103 35.9
Cpa.g.sc14.234 Carica papaya HOM05D002804 ORTHO05D003755 6.3e-09 65.5 121 33.9
Eucgr.B01359 Eucalyptus grandis HOM05D002804 ORTHO05D003755 6.3e-09 65.5 105 36.2
FvH4_5g35322 Fragaria vesca HOM05D002804 ORTHO05D003755 8.2e-09 65.1 117 37.6
FAN05G3459 Fragaria x ananassa HOM05D002804 ORTHO05D003755 8.2e-09 65.1 209 28.2
RcHm_v2.0_Chr7g0236231 Rosa chinensis HOM05D002804 ORTHO05D003755 8.2e-09 65.1 137 35.0
RcHm_v2.0_Chr7g0236631 Rosa chinensis HOM05D002804 ORTHO05D029636 8.2e-09 65.1 89 46.1
FAN02G1490 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.4e-08 64.3 130 35.4
FAN13G1238 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.4e-08 64.3 137 35.0
RcHm_v2.0_Chr7g0236201 Rosa chinensis HOM05D002804 ORTHO05D003755 1.4e-08 64.3 104 39.4
FvH4_5g32070 Fragaria vesca HOM05D002804 ORTHO05D003755 1.8e-08 63.9 130 36.9
FvH4_5g35060 Fragaria vesca HOM05D002804 ORTHO05D003755 1.8e-08 63.9 118 38.1
FAN08G3046 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.8e-08 63.9 141 34.0
FAN13G2413 Fragaria x ananassa HOM05D002804 ORTHO05D022637 2.4e-08 63.5 143 34.3
Lalb_Chr02g0147321 Lupinus albus HOM05D002804 ORTHO05D003755 2.4e-08 63.5 112 33.9
QL03p011442 Quercus lobata HOM05D002804 ORTHO05D003755 3.1e-08 63.2 126 34.1
RcHm_v2.0_Chr4g0420021 Rosa chinensis HOM05D002804 ORTHO05D003755 3.1e-08 63.2 100 39.0
RcHm_v2.0_Chr0c11g0499391 Rosa chinensis HOM05D002804 ORTHO05D003755 4.1e-08 62.8 162 31.5
FvH4_5g35253 Fragaria vesca HOM05D002804 ORTHO05D003755 5.3e-08 62.4 174 29.3
RcHm_v2.0_Chr7g0218371 Rosa chinensis HOM05D002804 ORTHO05D003755 9.1e-08 61.6 156 31.4
Sabra13G0000100 Salix brachista HOM05D002804 ORTHO05D003755 9.1e-08 61.6 118 31.4
FAN18G3729 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.2e-07 61.2 169 32.0
Atru.chr12.1496 Acer truncatum HOM05D002804 ORTHO05D003755 1.6e-07 60.8 125 36.8
FvH4_6g08910 Fragaria vesca HOM05D002804 ORTHO05D003755 1.6e-07 60.8 145 35.2
MSTRG.5178 Avicennia marina HOM05D002804 ORTHO05D003755 2.0e-07 60.5 177 29.9
VMungo0720G2485 Vigna mungo HOM05D002804 ORTHO05D003755 2.0e-07 60.5 191 27.2
CiPaw.04G013600 Carya illinoinensis HOM05D002804 ORTHO05D003755 2.7e-07 60.1 73 46.6
FAN08G3255 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.7e-07 60.1 93 37.6
RcHm_v2.0_Chr4g0419921 Rosa chinensis HOM05D002804 ORTHO05D003755 2.7e-07 60.1 94 39.4
FvH4_5g35320 Fragaria vesca HOM05D002804 ORTHO05D003755 3.5e-07 59.7 88 44.3
Lj5g0005878 Lotus japonicus HOM05D002804 ORTHO05D003755 3.5e-07 59.7 112 34.8
Medtr1g085280 Medicago truncatula HOM05D002804 ORTHO05D003755 3.5e-07 59.7 107 33.6
FvH4_5g35300 Fragaria vesca HOM05D002804 ORTHO05D003755 4.5e-07 59.3 175 28.0
AT5G03560 Arabidopsis thaliana HOM05D002804 ORTHO05D003755 7.7e-07 58.5 122 32.0
FvH4_5g35050 Fragaria vesca HOM05D002804 ORTHO05D003755 7.7e-07 58.5 130 30.8
FAN02G1170 Fragaria x ananassa HOM05D002804 ORTHO05D003755 7.7e-07 58.5 75 46.7
HPP92_022010 Vanilla planifolia HOM05D002804 ORTHO05D003755 7.7e-07 58.5 52 57.7
FvH4_5g31132 Fragaria vesca HOM05D002804 ORTHO05D006737 1.0e-06 58.2 94 41.5
FAN03G0432 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.3e-06 57.8 71 50.7
FAN08G1393 Fragaria x ananassa HOM05D002804 ORTHO05D029665 1.3e-06 57.8 174 28.2
FAN18G1140 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.3e-06 57.8 92 37.0
Psat6g157320 Pisum sativum HOM05D002804 ORTHO05D003755 1.3e-06 57.8 89 37.1
FvH4_5g31001 Fragaria vesca HOM05D002804 ORTHO05D003755 1.7e-06 57.4 117 32.5
RcHm_v2.0_Chr7g0235811 Rosa chinensis HOM05D002804 ORTHO05D003755 1.7e-06 57.4 80 45.0
Aqoxy314s002 Aquilegia oxysepala HOM05D002804 ORTHO05D003755 2.2e-06 57.0 64 46.9
BraA03t09504Z Brassica rapa HOM05D007539 ORTHO05D009315 2.2e-06 57.0 85 41.2
FAN13G1594 Fragaria x ananassa HOM05D002804 ORTHO05D003755 3.8e-06 56.2 73 47.9
TPR.G3051 Trifolium pratense HOM05D002804 ORTHO05D003755 3.8e-06 56.2 127 29.9
Phvul.007G207300 Phaseolus vulgaris HOM05D002804 ORTHO05D003755 5.0e-06 55.8 125 32.0
FAN10G0048 Fragaria x ananassa HOM05D002804 ORTHO05D003755 6.5e-06 55.5 63 49.2
Sc14g0008950 Simmondsia chinensis HOM05D002804 ORTHO05D003755 6.5e-06 55.5 140 34.3
FvH4_7g09010 Fragaria vesca HOM05D002804 ORTHO05D003755 8.5e-06 55.1 63 49.2
FAN06G4567 Fragaria x ananassa HOM05D002804 ORTHO05D003755 8.5e-06 55.1 63 49.2


User provided reference genes

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